Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32559 * 121.64884 * 2 1 4 4 S 1.77231 * 105.31936 * 180.19698 * 3 2 1 5 5 C 1.72202 * 94.84605 * 359.76146 * 4 3 2 6 6 O 1.21830 * 127.05815 * 180.02562 * 5 4 3 7 7 N 1.34240 * 105.88838 * 359.97438 * 5 4 3 8 8 C 1.46505 * 121.38581 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46612 * 90.02567 * 8 7 5 10 10 C 1.50704 * 109.47133 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99522 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00172 * 179.72300 * 10 9 8 13 13 C 1.46497 * 119.99770 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99708 * 180.02562 * 12 10 9 15 15 C 1.52996 * 109.47511 * 90.00670 * 14 12 10 16 16 C 1.52997 * 109.47611 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.47163 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00300 * 269.99643 * 17 16 15 19 19 C 1.36942 * 119.99850 * 89.99958 * 17 16 15 20 20 H 1.08003 * 119.99942 * 22.34532 * 19 17 16 21 21 C 1.38805 * 120.00080 * 202.34387 * 19 17 16 22 22 N 1.31627 * 119.99843 * 11.34182 * 21 19 17 23 23 Si 1.86798 * 120.00487 * 191.34548 * 21 19 17 24 24 H 1.48504 * 109.47325 * 89.99444 * 23 21 19 25 25 H 1.48496 * 109.47682 * 210.00169 * 23 21 19 26 26 H 1.48503 * 109.46869 * 330.00316 * 23 21 19 27 27 H 1.08998 * 109.47173 * 270.24535 * 1 2 3 28 28 H 1.09006 * 109.47022 * 30.24172 * 1 2 3 29 29 H 1.08998 * 109.47349 * 150.23999 * 1 2 3 30 30 H 1.08005 * 127.34111 * 359.93356 * 3 2 1 31 31 H 1.09004 * 109.46825 * 330.03303 * 8 7 5 32 32 H 1.08996 * 109.47353 * 210.02757 * 8 7 5 33 33 H 1.09004 * 109.46924 * 60.00797 * 9 8 7 34 34 H 1.09000 * 109.47880 * 300.00306 * 9 8 7 35 35 H 1.09000 * 109.47181 * 89.99897 * 13 12 10 36 36 H 1.08998 * 109.46660 * 209.99093 * 13 12 10 37 37 H 1.08997 * 109.47230 * 329.99643 * 13 12 10 38 38 H 1.09002 * 109.46726 * 210.00736 * 14 12 10 39 39 H 1.08999 * 109.47496 * 329.99725 * 14 12 10 40 40 H 1.09007 * 109.46602 * 299.99370 * 15 14 12 41 41 H 1.08993 * 109.47088 * 59.99200 * 15 14 12 42 42 H 1.08998 * 109.46849 * 299.99651 * 16 15 14 43 43 H 1.09006 * 109.47175 * 59.99403 * 16 15 14 44 44 H 1.08995 * 109.46914 * 94.21232 * 18 17 16 45 45 H 1.09000 * 109.47339 * 214.21599 * 18 17 16 46 46 H 1.08998 * 109.46730 * 334.21481 * 18 17 16 47 47 H 0.97003 * 119.99742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9034 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0008 6 8 4.3672 -1.9704 -0.0016 7 7 2.2221 -1.1605 0.0055 8 6 1.5575 -2.4661 0.0107 9 6 1.3322 -2.9178 1.4550 10 6 0.6490 -4.2611 1.4605 11 8 0.3703 -4.8039 0.4123 12 7 0.3533 -4.8620 2.6301 13 6 0.6955 -4.2091 3.8961 14 6 -0.3102 -6.1680 2.6353 15 6 0.7446 -7.2762 2.6267 16 6 0.0516 -8.6402 2.6328 17 7 1.0618 -9.7012 2.6240 18 6 1.5557 -10.2318 1.3509 19 6 1.5443 -10.1970 3.8058 20 1 0.9642 -10.0952 4.7111 21 6 2.7788 -10.8306 3.8401 22 7 3.5830 -10.7617 2.8003 23 14 3.2991 -11.7809 5.3618 24 1 2.8560 -13.1930 5.2390 25 1 4.7776 -11.7356 5.4925 26 1 2.6769 -11.1698 6.5638 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8879 -0.5176 29 1 -0.3634 -0.8921 -0.5101 30 1 1.8153 2.1367 -0.0010 31 1 2.1837 -3.1946 -0.5043 32 1 0.5974 -2.3871 -0.4993 33 1 0.7059 -2.1892 1.9700 34 1 2.2922 -2.9968 1.9651 35 1 -0.1358 -3.5816 4.2176 36 1 0.8928 -4.9671 4.6541 37 1 1.5839 -3.5928 3.7586 38 1 -0.9257 -6.2592 3.5303 39 1 -0.9402 -6.2591 1.7505 40 1 1.3600 -7.1849 1.7316 41 1 1.3745 -7.1850 3.5116 42 1 -0.5635 -8.7312 3.5280 43 1 -0.5786 -8.7315 1.7481 44 1 2.4658 -9.7040 1.0660 45 1 1.7709 -11.2948 1.4593 46 1 0.7978 -10.0913 0.5803 47 1 4.4459 -11.2042 2.8245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724849966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = -36.129580 kcal Electronic energy + Delta-G solvation = -27439.922609 eV Core-core repulsion = 23556.887520 eV Total energy + Delta-G solvation = -3883.035089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.17380 -40.91312 -38.74453 -37.98472 -36.76278 -34.67219 -33.96733 -32.46499 -31.77609 -29.23499 -28.15765 -27.85530 -26.98882 -25.72436 -24.37283 -23.43688 -21.99130 -21.35471 -20.21680 -19.07378 -18.79309 -18.64266 -17.60989 -17.54602 -17.07227 -16.91787 -16.56124 -16.10401 -15.78270 -15.49022 -15.33104 -14.98058 -14.79103 -14.59309 -14.52293 -14.43946 -14.20858 -13.82406 -13.78301 -13.28817 -13.23100 -13.13684 -13.05265 -12.77002 -12.56236 -12.50366 -12.38532 -12.33050 -12.25164 -12.05882 -12.05045 -11.89813 -11.42964 -11.26444 -11.00470 -10.67878 -10.61397 -9.73473 -8.97842 -8.81805 -7.84466 -5.33621 -0.15469 0.36436 0.86644 1.10258 1.44015 1.45884 1.49499 1.54967 1.63854 2.09248 2.49533 3.29684 3.37823 3.57755 3.60751 3.68040 3.76835 4.06608 4.15896 4.19027 4.28902 4.35985 4.41684 4.54026 4.54484 4.59062 4.63726 4.70639 4.76721 4.78945 4.80168 4.82136 4.88268 4.91114 5.01964 5.23373 5.25157 5.31772 5.40166 5.55080 5.61439 5.66360 5.72850 6.21912 6.30805 6.33273 7.06687 7.11910 7.84451 8.30020 9.20072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002186 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.479731 B =12807.004845 C =13508.975415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.220 4.220 4 S -0.002 6.002 5 C 0.456 3.544 6 O -0.527 6.527 7 N -0.529 5.529 8 C 0.118 3.882 9 C -0.140 4.140 10 C 0.511 3.489 11 O -0.581 6.581 12 N -0.613 5.613 13 C 0.070 3.930 14 C 0.126 3.874 15 C -0.132 4.132 16 C 0.152 3.848 17 N -0.623 5.623 18 C 0.179 3.821 19 C -0.258 4.258 20 H 0.079 0.921 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.262 1.262 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.232 0.768 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.015 0.985 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.052 0.948 44 H -0.007 1.007 45 H 0.020 0.980 46 H 0.025 0.975 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 31.070 -1.305 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.241 5.759 5 C 0.139 3.861 6 O -0.411 6.411 7 N -0.249 5.249 8 C -0.007 4.007 9 C -0.180 4.180 10 C 0.299 3.701 11 O -0.462 6.462 12 N -0.345 5.345 13 C -0.072 4.072 14 C 0.003 3.997 15 C -0.174 4.174 16 C 0.026 3.974 17 N -0.346 5.346 18 C 0.034 3.966 19 C -0.388 4.388 20 H 0.097 0.903 21 C -0.257 4.257 22 N -0.593 5.593 23 Si 0.802 3.198 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.187 1.187 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.093 0.907 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.034 0.966 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.011 0.989 45 H 0.039 0.961 46 H 0.044 0.956 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.539 30.809 -1.852 32.614 hybrid contribution 0.312 -1.924 0.409 1.991 sum -10.227 28.885 -1.442 30.676 Atomic orbital electron populations 1.20987 0.83698 1.05723 1.05554 1.20063 0.97479 0.83711 1.00563 1.25461 0.90367 1.02777 1.17054 1.85215 1.11614 0.98835 1.80270 1.22129 0.84409 0.96482 0.83038 1.90981 1.50245 1.44495 1.55359 1.46195 1.05796 1.08669 1.64244 1.21534 0.99950 0.82056 0.97163 1.21903 1.02733 0.94873 0.98521 1.20807 0.78454 0.87522 0.83286 1.90710 1.55437 1.67424 1.32609 1.48033 1.59234 1.20136 1.07105 1.22096 1.02264 0.98707 0.84135 1.21450 0.94100 0.80284 1.03834 1.22324 0.98799 0.96961 0.99289 1.20940 0.90504 0.85829 1.00156 1.44279 1.47155 1.40446 1.02708 1.20490 0.94076 0.96560 0.85468 1.19620 0.99243 1.31248 0.88688 0.90342 1.25926 0.95985 1.03195 1.00582 1.70290 1.09521 1.47557 1.31944 0.85157 0.76481 0.78635 0.79532 1.21202 1.22558 1.18657 0.87750 0.86549 0.90681 0.75189 0.91587 0.85849 0.84301 0.89133 0.88926 0.90834 0.90388 0.87487 0.90702 0.96596 0.94032 0.91842 0.92952 0.98861 0.96091 0.95625 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.27 9.69 71.24 0.69 0.42 16 2 C 0.09 0.93 6.59 40.71 0.27 1.20 16 3 C -0.22 -1.85 11.24 66.67 0.75 -1.10 16 4 S 0.00 -0.04 22.97 -56.49 -1.30 -1.34 16 5 C 0.46 11.64 8.27 129.87 1.07 12.71 16 6 O -0.53 -18.74 17.55 -4.76 -0.08 -18.83 16 7 N -0.53 -9.81 2.60 -643.42 -1.68 -11.48 16 8 C 0.12 2.42 4.56 86.38 0.39 2.82 16 9 C -0.14 -2.60 4.58 29.85 0.14 -2.47 16 10 C 0.51 13.63 7.67 87.66 0.67 14.30 16 11 O -0.58 -20.50 15.56 -3.05 -0.05 -20.55 16 12 N -0.61 -14.95 2.87 -846.78 -2.43 -17.39 16 13 C 0.07 1.10 10.25 127.77 1.31 2.41 16 14 C 0.13 3.51 5.40 86.38 0.47 3.98 16 15 C -0.13 -5.16 5.86 30.59 0.18 -4.98 16 16 C 0.15 6.28 5.71 86.38 0.49 6.78 16 17 N -0.62 -33.05 2.93 -726.95 -2.13 -35.18 16 18 C 0.18 9.75 9.01 127.77 1.15 10.90 16 19 C -0.26 -14.52 9.67 84.03 0.81 -13.71 16 20 H 0.08 4.16 7.84 -2.91 -0.02 4.14 16 21 C -0.06 -3.65 5.13 84.86 0.44 -3.22 16 22 N -0.95 -59.26 10.59 21.65 0.23 -59.03 16 23 Si 0.97 46.28 29.57 68.60 2.03 48.31 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.12 -0.23 8.10 -2.38 -0.02 -0.24 16 29 H 0.07 0.33 6.18 -2.39 -0.01 0.32 16 30 H 0.23 0.04 8.06 -2.91 -0.02 0.02 16 31 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 32 H 0.12 2.00 6.07 -2.39 -0.01 1.99 16 33 H 0.14 1.38 8.11 -2.39 -0.02 1.36 16 34 H 0.09 1.92 7.39 -2.39 -0.02 1.90 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 37 H 0.08 1.09 6.43 -2.39 -0.02 1.08 16 38 H 0.11 2.29 8.07 -2.39 -0.02 2.27 16 39 H 0.07 2.19 7.43 -2.39 -0.02 2.18 16 40 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 43 H 0.05 2.00 7.86 -2.38 -0.02 1.98 16 44 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 45 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 46 H 0.03 1.20 7.84 -2.39 -0.02 1.19 16 47 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -85.21 398.35 4.39 -80.82 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.96 Total: 4.62 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 8.83 Total: 30.04 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.01 Total: -123.07 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.13 Total: -39.38 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.30 Total: -1.34 kcal Total: -85.21 4.39 -80.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724849966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.690 kcal (2) G-P(sol) polarization free energy of solvation -85.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds