Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31784 * 122.75375 * 2 1 4 4 C 1.29020 * 117.12652 * 179.72514 * 3 2 1 5 5 S 1.70982 * 110.16878 * 0.02562 * 4 3 2 6 6 C 1.33643 * 122.74853 * 179.70228 * 2 1 3 7 7 C 1.50698 * 126.03534 * 0.25275 * 6 2 1 8 8 C 1.53000 * 109.47226 * 90.00176 * 7 6 2 9 9 C 1.50700 * 109.47596 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99688 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00452 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99805 * 359.97438 * 11 9 8 13 13 C 1.46491 * 120.00044 * 180.02562 * 11 9 8 14 14 C 1.52996 * 109.47494 * 89.99739 * 13 11 9 15 15 H 1.09001 * 109.47015 * 59.99742 * 14 13 11 16 16 O 1.42900 * 109.47314 * 299.99997 * 14 13 11 17 17 C 1.53004 * 109.47214 * 179.97438 * 14 13 11 18 18 N 1.46508 * 109.46787 * 185.00090 * 17 14 13 19 19 C 1.46498 * 119.99995 * 90.00044 * 18 17 14 20 20 C 1.36936 * 119.99805 * 269.99847 * 18 17 14 21 21 H 1.07996 * 120.00200 * 141.92331 * 20 18 17 22 22 C 1.38821 * 119.99787 * 321.91932 * 20 18 17 23 23 N 1.31622 * 119.99422 * 157.19542 * 22 20 18 24 24 Si 1.86792 * 120.00253 * 337.19225 * 22 20 18 25 25 H 1.48506 * 109.46891 * 95.67536 * 24 22 20 26 26 H 1.48503 * 109.47514 * 215.67512 * 24 22 20 27 27 H 1.48500 * 109.47382 * 335.67852 * 24 22 20 28 28 H 1.09004 * 109.46946 * 90.02180 * 1 2 3 29 29 H 1.08996 * 109.47490 * 210.02447 * 1 2 3 30 30 H 1.09005 * 109.46879 * 330.03201 * 1 2 3 31 31 H 1.08005 * 124.91617 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46983 * 209.99741 * 7 6 2 33 33 H 1.08994 * 109.47616 * 330.00026 * 7 6 2 34 34 H 1.09003 * 109.46785 * 299.99687 * 8 7 6 35 35 H 1.08997 * 109.47437 * 59.99326 * 8 7 6 36 36 H 1.09000 * 109.47491 * 89.99876 * 12 11 9 37 37 H 1.08998 * 109.47536 * 210.00427 * 12 11 9 38 38 H 1.09006 * 109.47372 * 329.99923 * 12 11 9 39 39 H 1.09008 * 109.47244 * 209.99692 * 13 11 9 40 40 H 1.09001 * 109.47200 * 329.99595 * 13 11 9 41 41 H 0.96704 * 113.99737 * 300.00202 * 16 14 13 42 42 H 1.09005 * 109.46723 * 304.99708 * 17 14 13 43 43 H 1.08997 * 109.46888 * 65.00185 * 17 14 13 44 44 H 1.08998 * 109.47078 * 85.68578 * 19 18 17 45 45 H 1.08995 * 109.47248 * 205.68464 * 19 18 17 46 46 H 1.09004 * 109.47222 * 325.68580 * 19 18 17 47 47 H 0.97001 * 119.99527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5039 0.9818 0.0055 5 16 3.9332 -0.6732 0.0108 6 6 2.2299 -1.1240 0.0058 7 6 1.6846 -2.5288 0.0078 8 6 1.5054 -3.0084 -1.4341 9 6 0.9595 -4.4130 -1.4322 10 8 0.7361 -4.9754 -0.3811 11 7 0.7203 -5.0447 -2.5985 12 6 0.9906 -4.3655 -3.8682 13 6 0.1891 -6.4098 -2.5967 14 6 -1.3401 -6.3622 -2.6036 15 1 -1.6832 -5.8400 -3.4968 16 8 -1.8004 -5.6704 -1.4411 17 6 -1.8949 -7.7881 -2.6023 18 7 -3.3538 -7.7445 -2.7294 19 6 -3.9744 -7.7662 -4.0562 20 6 -4.1371 -7.6836 -1.6079 21 1 -5.0307 -7.0770 -1.6056 22 6 -3.7828 -8.4016 -0.4739 23 7 -4.2292 -8.0291 0.7070 24 14 -2.6726 -9.8963 -0.6238 25 1 -1.2667 -9.4971 -0.3606 26 1 -3.0889 -10.9234 0.3648 27 1 -2.7796 -10.4569 -1.9948 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 4.2060 1.8025 0.0058 32 1 2.3809 -3.1882 0.5260 33 1 0.7216 -2.5441 0.5180 34 1 0.8091 -2.3490 -1.9523 35 1 2.4684 -2.9931 -1.9444 36 1 2.0157 -4.5690 -4.1781 37 1 0.3015 -4.7309 -4.6296 38 1 0.8558 -3.2913 -3.7416 39 1 0.5402 -6.9376 -3.4835 40 1 0.5323 -6.9320 -1.7035 41 1 -1.5315 -6.0800 -0.6074 42 1 -1.4735 -8.3426 -3.4409 43 1 -1.6260 -8.2816 -1.6684 44 1 -4.0918 -8.7986 -4.3856 45 1 -4.9522 -7.2870 -4.0078 46 1 -3.3411 -7.2292 -4.7624 47 1 -3.9813 -8.5306 1.4994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725723539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -12.855961 kcal Electronic energy + Delta-G solvation = -28146.105035 eV Core-core repulsion = 24264.079166 eV Total energy + Delta-G solvation = -3882.025869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.27749 -39.77249 -37.32418 -35.41510 -34.57485 -34.29443 -31.56957 -31.29548 -29.97053 -27.99973 -27.12369 -26.25498 -25.60389 -24.87375 -23.32359 -21.59702 -20.72113 -19.13410 -19.03310 -18.37660 -17.19786 -16.89208 -16.18517 -15.96868 -15.70397 -15.47395 -15.06291 -14.71382 -14.34181 -14.23577 -13.82470 -13.74209 -13.47143 -13.33418 -12.92977 -12.79608 -12.71801 -12.71089 -12.59631 -12.45858 -12.33320 -12.04810 -11.93641 -11.66753 -11.43117 -11.23792 -11.02388 -10.82133 -10.49732 -10.42374 -9.96410 -9.91284 -9.75942 -9.54841 -9.50346 -9.39519 -8.93949 -8.47711 -8.34732 -6.72556 -5.90655 -3.30134 0.44272 1.10128 1.48623 2.53148 2.77217 3.07053 3.30958 3.48608 3.52780 3.97572 4.36781 4.56577 4.72055 4.81355 4.85132 4.91045 4.93806 5.00867 5.08781 5.19500 5.26398 5.34361 5.44030 5.46063 5.46776 5.50172 5.56216 5.66261 5.69154 5.79725 5.83879 5.87594 5.97512 6.07245 6.14058 6.25121 6.34420 6.55600 6.63370 6.70027 6.79601 7.45513 7.46648 8.11473 8.31895 8.45901 8.66980 9.04030 9.78033 10.17373 11.25173 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002592 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.251683 B =10798.759068 C =11112.842048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.061 3.939 3 N -0.466 5.466 4 C 0.015 3.985 5 S 0.110 5.890 6 C -0.211 4.211 7 C -0.028 4.028 8 C -0.131 4.131 9 C 0.518 3.482 10 O -0.529 6.529 11 N -0.610 5.610 12 C 0.079 3.921 13 C 0.077 3.923 14 C 0.080 3.920 15 H 0.083 0.917 16 O -0.533 6.533 17 C 0.108 3.892 18 N -0.603 5.603 19 C 0.126 3.874 20 C -0.252 4.252 21 H 0.076 0.924 22 C 0.035 3.965 23 N -0.896 5.896 24 Si 0.871 3.129 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.198 0.802 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.375 0.625 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.006 0.994 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.792 14.461 -7.659 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 N -0.180 5.180 4 C -0.283 4.283 5 S 0.364 5.636 6 C -0.332 4.332 7 C -0.068 4.068 8 C -0.171 4.171 9 C 0.306 3.694 10 O -0.405 6.405 11 N -0.343 5.343 12 C -0.064 4.064 13 C -0.047 4.047 14 C 0.016 3.984 15 H 0.101 0.899 16 O -0.337 6.337 17 C -0.019 4.019 18 N -0.327 5.327 19 C -0.019 4.019 20 C -0.381 4.381 21 H 0.093 0.907 22 C -0.165 4.165 23 N -0.538 5.538 24 Si 0.701 3.299 25 H -0.215 1.215 26 H -0.229 1.229 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.222 0.778 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.115 14.559 -7.381 25.136 hybrid contribution 0.237 -1.105 0.181 1.145 sum 19.352 13.453 -7.200 24.644 Atomic orbital electron populations 1.20431 0.86722 1.03789 1.03225 1.20310 0.98429 0.86061 1.02258 1.66191 1.05019 1.31697 1.15067 1.28256 0.95260 0.99922 1.04887 1.84046 1.07512 1.03782 1.68266 1.25766 0.94700 1.00812 1.11900 1.19808 1.02842 0.87885 0.96240 1.21654 1.02645 0.94437 0.98381 1.20389 0.77748 0.87810 0.83496 1.90713 1.51725 1.67380 1.30679 1.47697 1.64786 1.15833 1.05984 1.21769 1.00799 0.97849 0.86013 1.22436 0.96692 0.82345 1.03190 1.22884 0.89311 0.95915 0.90300 0.89914 1.86494 1.78592 1.53499 1.15132 1.21835 0.86061 0.94153 0.99825 1.43882 0.99811 1.86362 1.02623 1.21063 0.96998 0.97324 0.86525 1.18683 1.07783 1.22519 0.89077 0.90685 1.25414 0.97907 0.97734 0.95448 1.69896 1.47251 1.39153 0.97481 0.87033 0.79923 0.85487 0.77440 1.21518 1.22949 1.19741 0.90493 0.90055 0.90610 0.78569 0.89732 0.88273 0.88642 0.89286 0.92850 0.90941 0.91179 0.90423 0.89814 0.77799 0.93899 0.92447 0.97590 0.93593 0.95770 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.06 36.00 0.36 -0.45 16 2 C 0.06 0.67 6.74 -84.22 -0.57 0.10 16 3 N -0.47 -5.22 10.53 -11.89 -0.13 -5.35 16 4 C 0.01 0.13 12.23 51.58 0.63 0.76 16 5 S 0.11 0.90 23.22 -107.50 -2.50 -1.59 16 6 C -0.21 -2.15 5.84 -35.92 -0.21 -2.36 16 7 C -0.03 -0.30 4.72 -27.88 -0.13 -0.43 16 8 C -0.13 -1.34 4.23 -27.88 -0.12 -1.46 16 9 C 0.52 7.35 7.18 -10.99 -0.08 7.27 16 10 O -0.53 -9.64 14.35 -3.10 -0.04 -9.68 16 11 N -0.61 -7.91 2.83 -181.58 -0.51 -8.42 16 12 C 0.08 0.69 10.24 59.85 0.61 1.30 16 13 C 0.08 1.14 5.15 -4.05 -0.02 1.12 16 14 C 0.08 1.47 3.48 -26.73 -0.09 1.38 16 15 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 16 O -0.53 -11.88 11.62 -43.88 -0.51 -12.39 16 17 C 0.11 2.27 4.21 -4.04 -0.02 2.25 16 18 N -0.60 -14.43 2.45 -181.11 -0.44 -14.87 16 19 C 0.13 2.52 10.70 59.85 0.64 3.16 16 20 C -0.25 -7.12 9.39 -15.06 -0.14 -7.27 16 21 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 22 C 0.03 1.01 5.29 -17.43 -0.09 0.92 16 23 N -0.90 -27.60 13.97 55.49 0.78 -26.82 16 24 Si 0.87 22.25 25.09 -169.99 -4.27 17.99 16 25 H -0.29 -7.08 6.68 56.52 0.38 -6.70 16 26 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.80 6.71 -51.93 -0.35 0.45 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.20 0.98 8.06 -52.48 -0.42 0.55 16 32 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.10 1.20 6.71 -51.93 -0.35 0.85 16 34 H 0.10 0.90 7.40 -51.93 -0.38 0.51 16 35 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 39 H 0.08 0.93 8.07 -51.92 -0.42 0.51 16 40 H 0.08 1.40 7.42 -51.93 -0.39 1.02 16 41 H 0.37 8.82 8.45 45.56 0.39 9.21 16 42 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.06 1.34 3.38 -51.93 -0.18 1.16 16 44 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.05 0.92 8.00 -51.93 -0.42 0.50 16 46 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -35.14 392.62 -7.58 -42.72 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.65 Total: 6.21 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.78 Total: 6.29 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.31 Total: -55.47 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.55 Total: -22.07 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.27 Total: 17.99 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.14 -7.58 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725723539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.860 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds