Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31784 * 122.75375 * 2 1 4 4 C 1.29020 * 117.12652 * 179.72514 * 3 2 1 5 5 S 1.70982 * 110.16878 * 0.02562 * 4 3 2 6 6 C 1.33643 * 122.74853 * 179.70228 * 2 1 3 7 7 C 1.50698 * 126.03534 * 0.25275 * 6 2 1 8 8 C 1.53000 * 109.47226 * 90.00176 * 7 6 2 9 9 C 1.50700 * 109.47596 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99688 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00452 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99805 * 359.97438 * 11 9 8 13 13 C 1.46491 * 120.00044 * 180.02562 * 11 9 8 14 14 C 1.52996 * 109.47494 * 89.99739 * 13 11 9 15 15 H 1.09001 * 109.47015 * 59.99742 * 14 13 11 16 16 O 1.42900 * 109.47314 * 299.99997 * 14 13 11 17 17 C 1.53004 * 109.47214 * 179.97438 * 14 13 11 18 18 N 1.46508 * 109.46787 * 185.00090 * 17 14 13 19 19 C 1.46498 * 119.99995 * 90.00044 * 18 17 14 20 20 C 1.36936 * 119.99805 * 269.99847 * 18 17 14 21 21 H 1.07996 * 120.00200 * 141.92331 * 20 18 17 22 22 C 1.38821 * 119.99787 * 321.91932 * 20 18 17 23 23 N 1.31622 * 119.99422 * 157.19542 * 22 20 18 24 24 Si 1.86792 * 120.00253 * 337.19225 * 22 20 18 25 25 H 1.48506 * 109.46891 * 95.67536 * 24 22 20 26 26 H 1.48503 * 109.47514 * 215.67512 * 24 22 20 27 27 H 1.48500 * 109.47382 * 335.67852 * 24 22 20 28 28 H 1.09004 * 109.46946 * 90.02180 * 1 2 3 29 29 H 1.08996 * 109.47490 * 210.02447 * 1 2 3 30 30 H 1.09005 * 109.46879 * 330.03201 * 1 2 3 31 31 H 1.08005 * 124.91617 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46983 * 209.99741 * 7 6 2 33 33 H 1.08994 * 109.47616 * 330.00026 * 7 6 2 34 34 H 1.09003 * 109.46785 * 299.99687 * 8 7 6 35 35 H 1.08997 * 109.47437 * 59.99326 * 8 7 6 36 36 H 1.09000 * 109.47491 * 89.99876 * 12 11 9 37 37 H 1.08998 * 109.47536 * 210.00427 * 12 11 9 38 38 H 1.09006 * 109.47372 * 329.99923 * 12 11 9 39 39 H 1.09008 * 109.47244 * 209.99692 * 13 11 9 40 40 H 1.09001 * 109.47200 * 329.99595 * 13 11 9 41 41 H 0.96704 * 113.99737 * 300.00202 * 16 14 13 42 42 H 1.09005 * 109.46723 * 304.99708 * 17 14 13 43 43 H 1.08997 * 109.46888 * 65.00185 * 17 14 13 44 44 H 1.08998 * 109.47078 * 85.68578 * 19 18 17 45 45 H 1.08995 * 109.47248 * 205.68464 * 19 18 17 46 46 H 1.09004 * 109.47222 * 325.68580 * 19 18 17 47 47 H 0.97001 * 119.99527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5039 0.9818 0.0055 5 16 3.9332 -0.6732 0.0108 6 6 2.2299 -1.1240 0.0058 7 6 1.6846 -2.5288 0.0078 8 6 1.5054 -3.0084 -1.4341 9 6 0.9595 -4.4130 -1.4322 10 8 0.7361 -4.9754 -0.3811 11 7 0.7203 -5.0447 -2.5985 12 6 0.9906 -4.3655 -3.8682 13 6 0.1891 -6.4098 -2.5967 14 6 -1.3401 -6.3622 -2.6036 15 1 -1.6832 -5.8400 -3.4968 16 8 -1.8004 -5.6704 -1.4411 17 6 -1.8949 -7.7881 -2.6023 18 7 -3.3538 -7.7445 -2.7294 19 6 -3.9744 -7.7662 -4.0562 20 6 -4.1371 -7.6836 -1.6079 21 1 -5.0307 -7.0770 -1.6056 22 6 -3.7828 -8.4016 -0.4739 23 7 -4.2292 -8.0291 0.7070 24 14 -2.6726 -9.8963 -0.6238 25 1 -1.2667 -9.4971 -0.3606 26 1 -3.0889 -10.9234 0.3648 27 1 -2.7796 -10.4569 -1.9948 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 4.2060 1.8025 0.0058 32 1 2.3809 -3.1882 0.5260 33 1 0.7216 -2.5441 0.5180 34 1 0.8091 -2.3490 -1.9523 35 1 2.4684 -2.9931 -1.9444 36 1 2.0157 -4.5690 -4.1781 37 1 0.3015 -4.7309 -4.6296 38 1 0.8558 -3.2913 -3.7416 39 1 0.5402 -6.9376 -3.4835 40 1 0.5323 -6.9320 -1.7035 41 1 -1.5315 -6.0800 -0.6074 42 1 -1.4735 -8.3426 -3.4409 43 1 -1.6260 -8.2816 -1.6684 44 1 -4.0918 -8.7986 -4.3856 45 1 -4.9522 -7.2870 -4.0078 46 1 -3.3411 -7.2292 -4.7624 47 1 -3.9813 -8.5306 1.4994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725723539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -38.567822 kcal Electronic energy + Delta-G solvation = -28147.219985 eV Core-core repulsion = 24264.079166 eV Total energy + Delta-G solvation = -3883.140819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.17503 -40.72139 -38.88851 -36.80203 -35.93390 -35.36172 -33.69425 -32.19974 -31.30232 -28.98156 -28.22180 -27.83598 -26.79369 -25.76798 -24.35968 -23.11682 -22.43687 -20.16116 -19.81967 -19.10417 -18.93607 -18.03908 -17.52467 -17.31551 -17.03295 -16.56819 -16.14303 -15.94403 -15.77311 -15.59267 -15.41290 -14.84446 -14.53803 -14.44540 -14.29223 -14.08764 -13.77023 -13.71177 -13.57566 -13.48496 -13.43386 -13.27874 -13.17330 -12.91190 -12.66081 -12.55269 -12.43701 -12.32325 -12.02585 -11.94022 -11.82489 -11.52543 -11.08477 -10.81912 -10.61276 -10.59265 -10.19700 -9.66273 -9.52841 -8.65947 -8.14108 -5.50222 -0.25844 0.42217 0.79160 1.27996 1.39413 1.50255 1.71122 1.77961 2.10482 2.43229 3.05947 3.31554 3.42896 3.52446 3.73877 3.89423 3.98017 3.99348 4.13436 4.21997 4.26847 4.28918 4.36566 4.43136 4.51635 4.58494 4.64873 4.67945 4.70895 4.71775 4.75244 4.81601 4.90597 4.96629 5.02823 5.05008 5.05570 5.12019 5.24362 5.35296 5.55440 5.98010 6.20663 6.46151 6.75993 6.88956 7.05081 7.28239 7.67300 8.07697 9.06083 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002592 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.251683 B =10798.759068 C =11112.842048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 N -0.499 5.499 4 C 0.020 3.980 5 S 0.151 5.849 6 C -0.228 4.228 7 C -0.021 4.021 8 C -0.118 4.118 9 C 0.507 3.493 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.071 3.929 13 C 0.086 3.914 14 C 0.082 3.918 15 H 0.094 0.906 16 O -0.555 6.555 17 C 0.102 3.898 18 N -0.619 5.619 19 C 0.123 3.877 20 C -0.239 4.239 21 H 0.029 0.971 22 C -0.020 4.020 23 N -0.948 5.948 24 Si 0.941 3.059 25 H -0.275 1.275 26 H -0.312 1.312 27 H -0.258 1.258 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.363 0.637 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.018 0.982 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.973 14.773 -10.763 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 N -0.214 5.214 4 C -0.277 4.277 5 S 0.405 5.595 6 C -0.349 4.349 7 C -0.062 4.062 8 C -0.158 4.158 9 C 0.297 3.703 10 O -0.460 6.460 11 N -0.342 5.342 12 C -0.071 4.071 13 C -0.038 4.038 14 C 0.019 3.981 15 H 0.112 0.888 16 O -0.359 6.359 17 C -0.024 4.024 18 N -0.344 5.344 19 C -0.021 4.021 20 C -0.370 4.370 21 H 0.047 0.953 22 C -0.216 4.216 23 N -0.592 5.592 24 Si 0.770 3.230 25 H -0.203 1.203 26 H -0.241 1.241 27 H -0.182 1.182 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.209 0.791 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.330 14.885 -10.585 28.849 hybrid contribution -0.747 -1.087 1.059 1.692 sum 21.584 13.797 -9.525 27.331 Atomic orbital electron populations 1.20418 0.86874 1.03351 1.03525 1.20428 0.98770 0.86480 1.02580 1.66231 1.06257 1.31973 1.16897 1.28879 0.94989 1.01220 1.02620 1.83885 1.05187 1.03054 1.67337 1.25684 0.96361 1.00037 1.12845 1.19633 1.01563 0.88412 0.96542 1.21614 1.04012 0.91887 0.98284 1.21109 0.77107 0.88960 0.83138 1.90695 1.53911 1.68738 1.32627 1.47819 1.63777 1.15284 1.07317 1.22091 1.02652 0.98362 0.83957 1.22186 0.93811 0.83871 1.03950 1.22933 0.91955 0.94129 0.89043 0.88817 1.86471 1.79421 1.54346 1.15681 1.21966 0.84343 0.95936 1.00117 1.44038 1.00967 1.86709 1.02643 1.21186 0.97171 0.98457 0.85271 1.18473 1.06854 1.20885 0.90761 0.95345 1.25987 1.00327 1.00368 0.94889 1.70039 1.50207 1.40632 0.98327 0.85898 0.78511 0.81035 0.77544 1.20270 1.24136 1.18165 0.89821 0.90814 0.90696 0.75327 0.90593 0.90560 0.87481 0.86483 0.90194 0.90001 0.89821 0.86415 0.92174 0.79093 0.89947 0.94917 0.96408 0.94662 0.91963 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.06 71.24 0.72 -0.95 16 2 C 0.05 1.05 6.74 41.52 0.28 1.33 16 3 N -0.50 -10.56 10.53 -191.54 -2.02 -12.57 16 4 C 0.02 0.29 12.23 130.66 1.60 1.89 16 5 S 0.15 2.14 23.22 -56.49 -1.31 0.83 16 6 C -0.23 -4.46 5.84 24.64 0.14 -4.32 16 7 C -0.02 -0.46 4.72 29.85 0.14 -0.32 16 8 C -0.12 -2.24 4.23 29.85 0.13 -2.11 16 9 C 0.51 14.02 7.18 87.66 0.63 14.65 16 10 O -0.58 -21.81 14.35 5.23 0.08 -21.74 16 11 N -0.61 -14.36 2.83 -846.77 -2.39 -16.76 16 12 C 0.07 0.94 10.24 127.77 1.31 2.25 16 13 C 0.09 2.35 5.15 86.38 0.44 2.79 16 14 C 0.08 2.89 3.48 30.59 0.11 2.99 16 15 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 16 O -0.56 -25.32 11.62 -140.71 -1.64 -26.95 16 17 C 0.10 4.06 4.21 86.38 0.36 4.42 16 18 N -0.62 -28.92 2.45 -726.91 -1.78 -30.70 16 19 C 0.12 4.64 10.70 127.77 1.37 6.01 16 20 C -0.24 -13.89 9.39 84.04 0.79 -13.10 16 21 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 22 C -0.02 -1.18 5.29 84.86 0.45 -0.73 16 23 N -0.95 -60.97 13.97 21.65 0.30 -60.67 16 24 Si 0.94 46.83 25.09 68.60 1.72 48.55 16 25 H -0.28 -13.06 6.68 99.48 0.66 -12.39 16 26 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.56 6.71 -2.39 -0.02 1.54 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.23 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.08 1.99 6.71 -2.39 -0.02 1.97 16 34 H 0.11 1.81 7.40 -2.39 -0.02 1.79 16 35 H 0.12 1.57 8.11 -2.39 -0.02 1.55 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 38 H 0.08 0.90 6.44 -2.38 -0.02 0.89 16 39 H 0.12 2.27 8.07 -2.38 -0.02 2.25 16 40 H 0.06 1.96 7.42 -2.39 -0.02 1.94 16 41 H 0.36 18.06 8.45 -74.05 -0.63 17.44 16 42 H 0.08 2.62 8.07 -2.38 -0.02 2.60 16 43 H 0.03 1.48 3.38 -2.39 -0.01 1.47 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.03 1.37 8.00 -2.39 -0.02 1.35 16 46 H 0.06 1.86 8.10 -2.38 -0.02 1.84 16 47 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -80.83 392.62 1.74 -79.09 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.31 Total: 26.11 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 8.46 Total: 14.80 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.89 Total: -120.70 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.56 Total: -48.69 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.72 Total: 48.55 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.31 Total: 0.83 kcal Total: -80.83 1.74 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725723539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.526 kcal (2) G-P(sol) polarization free energy of solvation -80.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds