Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91565 * 2 1 4 4 C 1.31778 * 117.12586 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74821 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.50144 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.03714 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47166 * 89.99860 * 7 6 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 10 8 14 14 O 1.42902 * 109.47155 * 64.99443 * 13 12 10 15 15 C 1.42900 * 114.00007 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47002 * 180.02562 * 15 14 13 17 17 N 1.46511 * 109.46947 * 65.00159 * 16 15 14 18 18 C 1.36937 * 119.99720 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00157 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99939 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00115 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47316 * 119.99929 * 22 20 18 25 25 H 1.48504 * 109.47319 * 240.00366 * 22 20 18 26 26 S 1.70979 * 124.91832 * 180.31927 * 2 1 3 27 27 H 1.09008 * 109.46971 * 89.97582 * 1 2 3 28 28 H 1.09004 * 109.46839 * 209.97153 * 1 2 3 29 29 H 1.08992 * 109.47389 * 329.97536 * 1 2 3 30 30 H 1.08999 * 109.46973 * 269.99524 * 5 4 3 31 31 H 1.08996 * 109.47760 * 29.99718 * 5 4 3 32 32 H 1.09004 * 109.47326 * 150.00143 * 5 4 3 33 33 H 1.08998 * 109.46890 * 329.99850 * 7 6 4 34 34 H 1.09002 * 109.46875 * 209.99653 * 7 6 4 35 35 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 36 36 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 37 37 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 38 38 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 39 39 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 40 40 H 1.08993 * 109.47617 * 184.99838 * 13 12 10 41 41 H 1.09001 * 109.46636 * 304.99828 * 13 12 10 42 42 H 1.09000 * 109.47146 * 300.00103 * 15 14 13 43 43 H 1.08997 * 109.47100 * 59.99845 * 15 14 13 44 44 H 1.09003 * 109.46933 * 184.99690 * 16 15 14 45 45 H 1.08998 * 109.47548 * 305.00043 * 16 15 14 46 46 H 0.96998 * 119.99584 * 359.97438 * 17 16 15 47 47 H 0.96996 * 120.00314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9355 -0.4006 -0.0015 7 6 5.3575 -0.8993 -0.0018 8 6 5.8314 -1.0666 1.4189 9 8 5.0878 -0.8061 2.3409 10 7 7.0817 -1.5059 1.6650 11 6 7.9800 -1.8200 0.5513 12 6 7.5443 -1.6629 3.0460 13 6 7.2263 -3.0781 3.5328 14 8 7.9799 -4.0242 2.7717 15 6 7.7548 -5.3842 3.1481 16 6 8.6087 -6.3036 2.2728 17 7 10.0272 -6.0563 2.5434 18 6 10.9863 -6.7677 1.8731 19 1 10.6970 -7.5109 1.1447 20 6 12.3302 -6.5331 2.1291 21 7 12.6828 -5.6271 3.0164 22 14 13.6386 -7.5030 1.2143 23 1 12.9861 -8.4528 0.2774 24 1 14.5029 -6.5689 0.4492 25 1 14.4666 -8.2583 2.1886 26 16 2.4857 -1.4020 -0.0078 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 4.7665 2.3015 -1.0276 31 1 4.0907 2.8790 0.5145 32 1 5.4433 1.7220 0.5133 33 1 5.9949 -0.1792 -0.5150 34 1 5.4059 -1.8590 -0.5164 35 1 8.5433 -0.9284 0.2761 36 1 8.6708 -2.6075 0.8527 37 1 7.3945 -2.1581 -0.3038 38 1 8.6207 -1.4970 3.0897 39 1 7.0388 -0.9374 3.6833 40 1 7.4893 -3.1676 4.5867 41 1 6.1618 -3.2752 3.4060 42 1 8.0285 -5.5218 4.1942 43 1 6.7012 -5.6289 3.0131 44 1 8.3717 -7.3433 2.4986 45 1 8.3989 -6.1030 1.2222 46 1 10.2869 -5.3886 3.1973 47 1 13.6219 -5.4633 3.1955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725803203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -27.883235 kcal Electronic energy + Delta-G solvation = -27167.959092 eV Core-core repulsion = 23285.281591 eV Total energy + Delta-G solvation = -3882.677501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48546 -39.65947 -37.74558 -35.61872 -34.40277 -34.09885 -31.74620 -31.15868 -29.76471 -29.35078 -27.64769 -26.60951 -25.63058 -23.52440 -23.07180 -22.70882 -21.14882 -19.76795 -18.69251 -18.18813 -17.35395 -17.16863 -16.52331 -16.16376 -15.79015 -15.47457 -15.26355 -14.93015 -14.47594 -14.15232 -13.79006 -13.75229 -13.52681 -13.42826 -13.23951 -13.05100 -12.92697 -12.76273 -12.68150 -12.53616 -12.34012 -12.26942 -12.17724 -11.77152 -11.65777 -11.38804 -11.28847 -10.91967 -10.82035 -10.50073 -10.03849 -9.99048 -9.83488 -9.71477 -9.40417 -9.24045 -8.88400 -8.75083 -8.69974 -6.89046 -5.74260 -3.02374 0.46948 1.12773 1.53940 2.48714 2.53031 2.97883 3.43399 3.48994 3.51279 3.82788 3.99928 4.37160 4.51353 4.60719 4.68445 4.72108 5.02852 5.06702 5.09134 5.14305 5.16702 5.20028 5.28045 5.35201 5.44599 5.46863 5.49684 5.55663 5.57507 5.57942 5.63788 5.71219 5.71868 5.84842 5.92144 6.01367 6.06945 6.34035 6.43451 6.60105 6.73789 7.27766 7.54771 7.57955 7.71140 8.04923 8.44327 9.55972 10.14534 10.50637 11.48568 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002059 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.369516 B =13593.153246 C =13817.675808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 N -0.472 5.472 4 C 0.076 3.924 5 C -0.078 4.078 6 C -0.205 4.205 7 C -0.062 4.062 8 C 0.513 3.487 9 O -0.536 6.536 10 N -0.603 5.603 11 C 0.074 3.926 12 C 0.120 3.880 13 C 0.045 3.955 14 O -0.371 6.371 15 C 0.059 3.941 16 C 0.155 3.845 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 S 0.131 5.869 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.025 0.975 46 H 0.387 0.613 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.686 13.393 -6.768 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.235 4.235 3 N -0.187 5.187 4 C -0.056 4.056 5 C -0.137 4.137 6 C -0.326 4.326 7 C -0.104 4.104 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.336 5.336 11 C -0.069 4.069 12 C -0.003 4.003 13 C -0.033 4.033 14 O -0.290 6.290 15 C -0.018 4.018 16 C 0.027 3.973 17 N -0.372 5.372 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 S 0.387 5.613 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.221 0.779 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.375 12.881 -6.549 26.636 hybrid contribution 1.364 0.149 -0.027 1.373 sum -21.011 13.030 -6.576 25.583 Atomic orbital electron populations 1.20430 0.85219 1.04229 1.03764 1.26889 1.01626 0.91186 1.03765 1.66117 1.04409 1.31712 1.16480 1.20057 0.90205 0.93873 1.01425 1.20345 0.95939 0.94791 1.02626 1.24957 0.98507 0.95734 1.13423 1.20074 0.90569 1.03915 0.95861 1.20425 0.81569 0.77101 0.90951 1.90709 1.54120 1.50440 1.46037 1.47759 1.12999 1.65137 1.07703 1.21966 0.94487 1.01854 0.88599 1.21554 1.01135 0.95338 0.82238 1.22844 0.95345 0.89739 0.95353 1.87987 1.66328 1.15130 1.59529 1.22773 0.97931 0.82066 0.99038 1.20683 0.85808 0.94418 0.96350 1.42297 0.98854 1.46733 1.49297 1.19279 0.86629 1.14509 1.16443 0.91229 1.24735 0.97048 0.99548 0.99771 1.69681 1.15801 1.35941 1.36649 0.86130 0.82079 0.79138 0.78916 1.20609 1.21904 1.21943 1.83913 0.97303 1.11996 1.68089 0.89652 0.90108 0.89320 0.90640 0.90518 0.90945 0.86787 0.87474 0.92619 0.88535 0.91421 0.89063 0.88765 0.92612 0.93637 0.93412 0.94057 0.95111 0.95702 0.77937 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.12 16 2 C 0.04 0.45 7.39 -13.45 -0.10 0.35 16 3 N -0.47 -5.86 10.53 -8.06 -0.08 -5.95 16 4 C 0.08 0.90 6.74 -84.23 -0.57 0.33 16 5 C -0.08 -0.71 9.82 36.00 0.35 -0.36 16 6 C -0.20 -2.31 5.08 -35.92 -0.18 -2.49 16 7 C -0.06 -0.60 4.18 -29.04 -0.12 -0.72 16 8 C 0.51 6.45 7.67 -10.98 -0.08 6.37 16 9 O -0.54 -8.55 15.62 5.56 0.09 -8.47 16 10 N -0.60 -7.27 2.84 -181.58 -0.51 -7.78 16 11 C 0.07 0.77 10.06 59.84 0.60 1.38 16 12 C 0.12 1.51 5.81 -4.05 -0.02 1.49 16 13 C 0.05 0.63 6.28 37.16 0.23 0.87 16 14 O -0.37 -6.29 9.14 -35.23 -0.32 -6.61 16 15 C 0.06 0.99 6.07 37.16 0.23 1.22 16 16 C 0.16 3.16 6.65 -4.04 -0.03 3.13 16 17 N -0.73 -18.61 5.55 -59.90 -0.33 -18.94 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 S 0.13 1.35 23.18 -107.50 -2.49 -1.14 16 27 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16 33 H 0.11 0.83 7.39 -51.93 -0.38 0.44 16 34 H 0.11 0.88 7.40 -51.93 -0.38 0.50 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.30 7.14 -51.93 -0.37 0.93 16 37 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 38 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.39 10.51 7.67 -40.82 -0.31 10.20 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -35.22 405.21 -9.00 -44.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.59 Total: 4.62 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.44 Total: 4.09 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.21 Total: -60.14 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.24 Total: -15.08 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.22 -9.00 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725803203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.342 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds