Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91565 * 2 1 4 4 C 1.31778 * 117.12586 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74821 * 180.02562 * 4 3 2 6 6 C 1.33644 * 114.50144 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.03714 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47166 * 89.99860 * 7 6 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 10 8 14 14 O 1.42902 * 109.47155 * 64.99443 * 13 12 10 15 15 C 1.42900 * 114.00007 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47002 * 180.02562 * 15 14 13 17 17 N 1.46511 * 109.46947 * 65.00159 * 16 15 14 18 18 C 1.36937 * 119.99720 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00157 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99939 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00115 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47316 * 119.99929 * 22 20 18 25 25 H 1.48504 * 109.47319 * 240.00366 * 22 20 18 26 26 S 1.70979 * 124.91832 * 180.31927 * 2 1 3 27 27 H 1.09008 * 109.46971 * 89.97582 * 1 2 3 28 28 H 1.09004 * 109.46839 * 209.97153 * 1 2 3 29 29 H 1.08992 * 109.47389 * 329.97536 * 1 2 3 30 30 H 1.08999 * 109.46973 * 269.99524 * 5 4 3 31 31 H 1.08996 * 109.47760 * 29.99718 * 5 4 3 32 32 H 1.09004 * 109.47326 * 150.00143 * 5 4 3 33 33 H 1.08998 * 109.46890 * 329.99850 * 7 6 4 34 34 H 1.09002 * 109.46875 * 209.99653 * 7 6 4 35 35 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 36 36 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 37 37 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 38 38 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 39 39 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 40 40 H 1.08993 * 109.47617 * 184.99838 * 13 12 10 41 41 H 1.09001 * 109.46636 * 304.99828 * 13 12 10 42 42 H 1.09000 * 109.47146 * 300.00103 * 15 14 13 43 43 H 1.08997 * 109.47100 * 59.99845 * 15 14 13 44 44 H 1.09003 * 109.46933 * 184.99690 * 16 15 14 45 45 H 1.08998 * 109.47548 * 305.00043 * 16 15 14 46 46 H 0.96998 * 119.99584 * 359.97438 * 17 16 15 47 47 H 0.96996 * 120.00314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9355 -0.4006 -0.0015 7 6 5.3575 -0.8993 -0.0018 8 6 5.8314 -1.0666 1.4189 9 8 5.0878 -0.8061 2.3409 10 7 7.0817 -1.5059 1.6650 11 6 7.9800 -1.8200 0.5513 12 6 7.5443 -1.6629 3.0460 13 6 7.2263 -3.0781 3.5328 14 8 7.9799 -4.0242 2.7717 15 6 7.7548 -5.3842 3.1481 16 6 8.6087 -6.3036 2.2728 17 7 10.0272 -6.0563 2.5434 18 6 10.9863 -6.7677 1.8731 19 1 10.6970 -7.5109 1.1447 20 6 12.3302 -6.5331 2.1291 21 7 12.6828 -5.6271 3.0164 22 14 13.6386 -7.5030 1.2143 23 1 12.9861 -8.4528 0.2774 24 1 14.5029 -6.5689 0.4492 25 1 14.4666 -8.2583 2.1886 26 16 2.4857 -1.4020 -0.0078 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 4.7665 2.3015 -1.0276 31 1 4.0907 2.8790 0.5145 32 1 5.4433 1.7220 0.5133 33 1 5.9949 -0.1792 -0.5150 34 1 5.4059 -1.8590 -0.5164 35 1 8.5433 -0.9284 0.2761 36 1 8.6708 -2.6075 0.8527 37 1 7.3945 -2.1581 -0.3038 38 1 8.6207 -1.4970 3.0897 39 1 7.0388 -0.9374 3.6833 40 1 7.4893 -3.1676 4.5867 41 1 6.1618 -3.2752 3.4060 42 1 8.0285 -5.5218 4.1942 43 1 6.7012 -5.6289 3.0131 44 1 8.3717 -7.3433 2.4986 45 1 8.3989 -6.1030 1.2222 46 1 10.2869 -5.3886 3.1973 47 1 13.6219 -5.4633 3.1955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725803203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = -51.479259 kcal Electronic energy + Delta-G solvation = -27168.982292 eV Core-core repulsion = 23285.281591 eV Total energy + Delta-G solvation = -3883.700701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36529 -40.55998 -39.03443 -36.81142 -36.11029 -34.88899 -33.43559 -32.22401 -30.83108 -30.05678 -29.26125 -27.51360 -26.52013 -25.49715 -23.94218 -23.58590 -22.78650 -20.68109 -19.53492 -19.23036 -18.95903 -18.34822 -17.57824 -17.36795 -16.91665 -16.69199 -16.26590 -16.03276 -15.74925 -15.61129 -15.04046 -14.78783 -14.53196 -14.46463 -14.26482 -14.13919 -14.06089 -13.83711 -13.54764 -13.42081 -13.24084 -13.18230 -13.03237 -12.91040 -12.82828 -12.73786 -12.68926 -12.50375 -12.09278 -12.07426 -11.90573 -11.68079 -11.04221 -10.96194 -10.64400 -10.52336 -10.21216 -9.68868 -9.51933 -8.96478 -7.91455 -5.19975 -0.31649 0.37404 0.75355 1.49498 1.50072 1.54151 1.60243 1.70662 2.07087 2.58363 2.76246 3.14920 3.42435 3.54152 3.71904 3.95784 3.96670 4.04348 4.06504 4.15910 4.28882 4.33804 4.45436 4.45760 4.46319 4.49919 4.53478 4.54401 4.64132 4.65427 4.71377 4.71583 4.78400 4.84784 4.94894 4.99678 5.07942 5.09596 5.14841 5.34252 5.46492 5.51542 6.25639 6.30664 6.40316 6.75818 7.09519 7.36822 8.12462 8.36995 9.32208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002059 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.369516 B =13593.153246 C =13817.675808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 N -0.502 5.502 4 C 0.060 3.940 5 C -0.076 4.076 6 C -0.221 4.221 7 C -0.057 4.057 8 C 0.512 3.488 9 O -0.575 6.575 10 N -0.603 5.603 11 C 0.075 3.925 12 C 0.121 3.879 13 C 0.048 3.952 14 O -0.388 6.388 15 C 0.066 3.934 16 C 0.152 3.848 17 N -0.740 5.740 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.295 1.295 26 S 0.130 5.870 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.026 0.974 46 H 0.375 0.625 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 13.048 -8.192 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.237 4.237 3 N -0.218 5.218 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.342 4.342 7 C -0.098 4.098 8 C 0.301 3.699 9 O -0.455 6.455 10 N -0.335 5.335 11 C -0.067 4.067 12 C -0.002 4.002 13 C -0.030 4.030 14 O -0.308 6.308 15 C -0.010 4.010 16 C 0.026 3.974 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 S 0.387 5.613 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.207 0.793 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.156 12.511 -8.004 27.510 hybrid contribution 1.487 0.259 0.426 1.569 sum -21.669 12.771 -7.578 26.269 Atomic orbital electron populations 1.20617 0.82803 1.05112 1.05211 1.27556 1.03138 0.90767 1.02224 1.66180 1.04989 1.32684 1.17994 1.20474 0.90548 0.94835 1.01346 1.20393 0.95414 0.93891 1.03793 1.25164 0.99336 0.95800 1.13912 1.20144 0.90150 1.05484 0.94058 1.20893 0.81083 0.76158 0.91797 1.90690 1.55086 1.52221 1.47462 1.47844 1.13209 1.64704 1.07754 1.22019 0.94223 1.01879 0.88590 1.21507 1.01180 0.94543 0.83005 1.22918 0.94769 0.89724 0.95561 1.87966 1.67151 1.15409 1.60249 1.22639 0.98673 0.81764 0.97953 1.20850 0.83668 0.95854 0.97044 1.42489 1.00752 1.46196 1.48840 1.19681 0.87441 1.14238 1.16071 0.90600 1.25563 0.99248 1.00992 1.01095 1.69837 1.15835 1.37785 1.38461 0.85073 0.79147 0.77813 0.77705 1.19011 1.22012 1.22220 1.83826 0.97347 1.12098 1.68075 0.87800 0.88467 0.89127 0.88736 0.91048 0.90709 0.84162 0.85850 0.90544 0.91580 0.89202 0.89045 0.88500 0.91899 0.93904 0.93641 0.91153 0.94074 0.95652 0.79288 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.46 71.24 0.75 -0.15 16 2 C 0.04 0.81 7.39 88.52 0.65 1.47 16 3 N -0.50 -12.23 10.53 -179.40 -1.89 -14.12 16 4 C 0.06 1.36 6.74 41.52 0.28 1.64 16 5 C -0.08 -1.32 9.82 71.24 0.70 -0.62 16 6 C -0.22 -4.74 5.08 24.64 0.13 -4.61 16 7 C -0.06 -0.99 4.18 29.10 0.12 -0.86 16 8 C 0.51 12.31 7.67 87.65 0.67 12.98 16 9 O -0.57 -18.15 15.62 -3.04 -0.05 -18.20 16 10 N -0.60 -13.87 2.84 -846.78 -2.40 -16.27 16 11 C 0.08 1.46 10.06 127.77 1.29 2.75 16 12 C 0.12 2.99 5.81 86.38 0.50 3.50 16 13 C 0.05 1.31 6.28 71.98 0.45 1.77 16 14 O -0.39 -12.93 9.14 -148.98 -1.36 -14.29 16 15 C 0.07 2.16 6.07 71.98 0.44 2.59 16 16 C 0.15 6.03 6.65 86.38 0.57 6.61 16 17 N -0.74 -37.77 5.55 -343.43 -1.91 -39.68 16 18 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 22 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 S 0.13 2.57 23.18 -56.49 -1.31 1.26 16 27 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.24 7.35 -2.39 -0.02 1.22 16 33 H 0.14 1.66 7.39 -2.39 -0.02 1.64 16 34 H 0.12 1.73 7.40 -2.39 -0.02 1.72 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.74 7.14 -2.39 -0.02 1.73 16 37 H 0.09 1.32 6.44 -2.38 -0.02 1.31 16 38 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 39 H 0.10 2.36 7.42 -2.39 -0.02 2.34 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.38 20.63 7.67 -92.71 -0.71 19.92 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.61 405.21 1.51 -74.10 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.26 Total: 27.82 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.85 Total: 10.45 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -5.91 Total: -128.96 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.41 Total: -32.49 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.31 Total: 1.26 kcal Total: -75.61 1.51 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725803203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.617 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds