Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34478 * 126.16225 * 2 1 4 4 C 1.30254 * 108.69835 * 180.17194 * 3 2 1 5 5 C 1.50695 * 125.62046 * 179.84064 * 4 3 2 6 6 N 1.46901 * 109.47379 * 89.68978 * 5 4 3 7 7 C 1.46895 * 111.00119 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47451 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46613 * 54.99652 * 8 7 6 10 10 C 1.53001 * 109.47108 * 295.00197 * 8 7 6 11 11 C 1.52996 * 109.47530 * 174.99813 * 8 7 6 12 12 N 1.46498 * 109.47059 * 184.99929 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00053 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47356 * 89.99148 * 21 19 17 23 23 H 1.48497 * 109.47342 * 209.99750 * 21 19 17 24 24 H 1.48505 * 109.46847 * 329.99403 * 21 19 17 25 25 O 1.33974 * 108.75988 * 359.57203 * 4 3 2 26 26 C 1.34327 * 126.16622 * 179.70106 * 2 1 3 27 27 C 1.50697 * 126.44188 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47213 * 270.29668 * 1 2 3 29 29 H 1.09000 * 109.47518 * 30.30216 * 1 2 3 30 30 H 1.08997 * 109.47404 * 150.30038 * 1 2 3 31 31 H 1.09002 * 109.47190 * 329.68782 * 5 4 3 32 32 H 1.09002 * 109.47519 * 209.69322 * 5 4 3 33 33 H 1.00904 * 110.99892 * 56.04804 * 6 5 4 34 34 H 1.08998 * 109.47324 * 59.99878 * 7 6 5 35 35 H 1.09002 * 109.47421 * 300.00055 * 7 6 5 36 36 H 1.09001 * 109.46786 * 59.99727 * 10 8 7 37 37 H 1.09001 * 109.47309 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.46988 * 299.99895 * 10 8 7 39 39 H 1.09004 * 109.47066 * 65.00196 * 11 8 7 40 40 H 1.08994 * 109.46974 * 305.00344 * 11 8 7 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.97000 * 120.00636 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46886 * 179.97438 * 27 26 2 46 46 H 1.09000 * 109.47051 * 299.99115 * 27 26 2 47 47 H 1.08994 * 109.47726 * 59.99418 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 -0.0037 5 6 4.7478 1.5999 -0.0084 6 7 5.1394 1.9013 1.3750 7 6 6.3131 2.7840 1.4095 8 6 6.6896 3.0753 2.8636 9 1 6.8367 2.1355 3.3960 10 6 5.5659 3.8697 3.5322 11 6 7.9834 3.8910 2.9019 12 7 8.4082 4.0679 4.2927 13 6 9.5338 4.7548 4.5714 14 8 10.1924 5.2307 3.6710 15 6 9.9742 4.9315 6.0018 16 16 11.5080 5.8915 6.0467 17 6 11.7846 5.9448 7.7860 18 1 11.0908 5.4621 8.4583 19 6 12.8949 6.6064 8.2921 20 7 13.1020 6.6458 9.5914 21 14 14.0954 7.4408 7.1294 22 1 13.6705 8.8457 6.9035 23 1 15.4551 7.4247 7.7263 24 1 14.1150 6.7152 5.8338 25 8 3.5733 -0.6446 0.0033 26 6 2.2997 -1.0844 0.0057 27 6 1.8493 -2.5225 0.0126 28 1 -0.3634 0.0053 1.0276 29 1 -0.3634 0.8872 -0.5185 30 1 -0.3634 -0.8926 -0.5091 31 1 4.5038 2.5271 -0.5271 32 1 5.5729 1.1040 -0.5197 33 1 5.3086 1.0537 1.8957 34 1 6.0794 3.7193 0.9008 35 1 7.1492 2.2967 0.9080 36 1 4.6441 3.2885 3.5049 37 1 5.8339 4.0768 4.5682 38 1 5.4188 4.8093 2.9997 39 1 7.8113 4.8668 2.4476 40 1 8.7612 3.3647 2.3486 41 1 7.8817 3.6870 5.0129 42 1 9.1993 5.4590 6.5579 43 1 10.1436 3.9539 6.4532 44 1 13.8777 7.1084 9.9452 45 1 2.7214 -3.1764 0.0157 46 1 1.2501 -2.7112 0.9034 47 1 1.2506 -2.7201 -0.8765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732334385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = -31.333167 kcal Electronic energy + Delta-G solvation = -25554.336480 eV Core-core repulsion = 21671.509378 eV Total energy + Delta-G solvation = -3882.827101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.77363 -39.44298 -37.85491 -35.60950 -35.52744 -33.59220 -32.45847 -32.40309 -29.79654 -29.51522 -28.36657 -26.56558 -25.61738 -25.06310 -23.75661 -22.17183 -21.08806 -20.70152 -20.35120 -17.88243 -17.34832 -17.09098 -16.48831 -16.29182 -16.25871 -15.57389 -15.17048 -15.01199 -14.84989 -14.67853 -14.37516 -13.95884 -13.81756 -13.67576 -13.54169 -13.30952 -13.22325 -12.97848 -12.92376 -12.82526 -12.75724 -12.59076 -12.47211 -11.96062 -11.42040 -11.33020 -11.27329 -11.21927 -11.08224 -11.00079 -10.86339 -10.58849 -9.85213 -9.52262 -9.13143 -9.01070 -8.94495 -8.91543 -8.49308 -6.91016 -6.28282 -3.99957 0.94432 2.12268 2.22115 2.77337 2.99330 3.27491 3.34018 3.44617 3.51164 3.64523 3.82968 4.23307 4.33828 4.34493 4.47243 4.50036 4.58325 4.66185 4.76117 4.76958 4.81351 4.83182 5.06271 5.10827 5.12931 5.13648 5.20403 5.24596 5.29556 5.31911 5.34864 5.53846 5.60995 5.64972 5.70439 5.76430 5.79123 5.90459 5.96805 6.02689 6.13047 6.28931 6.55050 6.70303 7.35154 7.62268 7.94735 8.42305 8.50606 9.17958 10.80966 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.001378 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.157307 B =20315.567469 C =20495.122604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 N -0.459 5.459 4 C 0.191 3.809 5 C 0.160 3.840 6 N -0.680 5.680 7 C 0.067 3.933 8 C -0.100 4.100 9 H 0.077 0.923 10 C -0.141 4.141 11 C 0.127 3.873 12 N -0.735 5.735 13 C 0.530 3.470 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 O -0.203 6.203 26 C -0.050 4.050 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.346 0.654 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.600 -18.276 -20.910 37.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 N -0.189 5.189 4 C -0.017 4.017 5 C 0.030 3.970 6 N -0.313 5.313 7 C -0.062 4.062 8 C -0.119 4.119 9 H 0.095 0.905 10 C -0.198 4.198 11 C 0.002 3.998 12 N -0.390 5.390 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 O -0.090 6.090 26 C -0.104 4.104 27 C -0.124 4.124 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.977 -16.294 -22.211 37.184 hybrid contribution 0.506 -1.637 1.002 1.985 sum -24.470 -17.931 -21.209 37.016 Atomic orbital electron populations 1.20108 0.86432 1.03287 1.02956 1.21579 0.98061 0.87690 1.06378 1.70348 1.00436 1.31191 1.16886 1.25944 0.95456 0.78727 1.01548 1.20209 0.88954 0.96001 0.91830 1.60377 1.38469 1.21071 1.11352 1.21948 0.90172 0.97490 0.96592 1.21340 0.94990 0.99620 0.95933 0.90505 1.21764 0.98131 1.00065 0.99877 1.21254 0.94848 1.00178 0.83535 1.45937 1.26956 1.57700 1.08361 1.20272 0.79837 0.77216 0.91075 1.90698 1.53601 1.47359 1.47878 1.23281 1.03707 1.05269 0.95238 1.84781 1.25197 1.69839 1.11763 1.22325 1.14288 1.41266 0.89063 0.89396 1.24708 0.96831 0.94765 0.94953 1.69936 1.28748 1.41735 1.11300 0.86735 0.80801 0.81450 0.82865 1.19195 1.19944 1.15937 1.84379 1.30328 1.24196 1.70093 1.23209 0.80730 0.98312 1.08100 1.20270 1.01947 0.86327 1.03824 0.90633 0.90529 0.90808 0.86593 0.92025 0.83618 0.89813 0.94163 0.91345 0.92885 0.92510 0.91339 0.91703 0.76623 0.88493 0.88499 0.91949 0.90354 0.89289 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.22 36.01 0.37 -0.02 16 2 C -0.02 -0.15 7.11 -82.81 -0.59 -0.74 16 3 N -0.46 -4.92 11.29 -7.36 -0.08 -5.01 16 4 C 0.19 1.74 7.86 -12.95 -0.10 1.64 16 5 C 0.16 1.04 6.31 -4.98 -0.03 1.01 16 6 N -0.68 -4.56 5.94 -115.06 -0.68 -5.24 16 7 C 0.07 0.42 5.07 -3.83 -0.02 0.41 16 8 C -0.10 -0.73 2.57 -90.62 -0.23 -0.96 16 9 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 10 C -0.14 -1.12 8.95 37.16 0.33 -0.79 16 11 C 0.13 1.32 5.06 -4.04 -0.02 1.29 16 12 N -0.73 -9.09 5.28 -60.30 -0.32 -9.41 16 13 C 0.53 9.35 7.85 -10.98 -0.09 9.27 16 14 O -0.52 -11.22 15.86 5.55 0.09 -11.13 16 15 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 21 Si 0.86 21.85 27.74 -169.99 -4.72 17.14 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 O -0.20 -1.85 10.78 5.36 0.06 -1.80 16 26 C -0.05 -0.39 7.39 -35.69 -0.26 -0.65 16 27 C -0.07 -0.24 9.96 36.00 0.36 0.12 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.23 7.89 -51.93 -0.41 -0.18 16 31 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.35 2.20 8.72 -39.29 -0.34 1.85 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 37 H 0.05 0.43 7.18 -51.93 -0.37 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.40 3.90 7.66 -40.82 -0.31 3.59 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -36.57 408.07 -8.33 -44.90 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.76 Total: -0.46 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.15 Total: -3.67 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.31 Total: -45.52 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.15 Total: -12.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.57 -8.33 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732334385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.569 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds