Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34478 * 126.16225 * 2 1 4 4 C 1.30254 * 108.69835 * 180.17194 * 3 2 1 5 5 C 1.50695 * 125.62046 * 179.84064 * 4 3 2 6 6 N 1.46901 * 109.47379 * 89.68978 * 5 4 3 7 7 C 1.46895 * 111.00119 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47451 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46613 * 54.99652 * 8 7 6 10 10 C 1.53001 * 109.47108 * 295.00197 * 8 7 6 11 11 C 1.52996 * 109.47530 * 174.99813 * 8 7 6 12 12 N 1.46498 * 109.47059 * 184.99929 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00053 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47356 * 89.99148 * 21 19 17 23 23 H 1.48497 * 109.47342 * 209.99750 * 21 19 17 24 24 H 1.48505 * 109.46847 * 329.99403 * 21 19 17 25 25 O 1.33974 * 108.75988 * 359.57203 * 4 3 2 26 26 C 1.34327 * 126.16622 * 179.70106 * 2 1 3 27 27 C 1.50697 * 126.44188 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47213 * 270.29668 * 1 2 3 29 29 H 1.09000 * 109.47518 * 30.30216 * 1 2 3 30 30 H 1.08997 * 109.47404 * 150.30038 * 1 2 3 31 31 H 1.09002 * 109.47190 * 329.68782 * 5 4 3 32 32 H 1.09002 * 109.47519 * 209.69322 * 5 4 3 33 33 H 1.00904 * 110.99892 * 56.04804 * 6 5 4 34 34 H 1.08998 * 109.47324 * 59.99878 * 7 6 5 35 35 H 1.09002 * 109.47421 * 300.00055 * 7 6 5 36 36 H 1.09001 * 109.46786 * 59.99727 * 10 8 7 37 37 H 1.09001 * 109.47309 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.46988 * 299.99895 * 10 8 7 39 39 H 1.09004 * 109.47066 * 65.00196 * 11 8 7 40 40 H 1.08994 * 109.46974 * 305.00344 * 11 8 7 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.97000 * 120.00636 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.46886 * 179.97438 * 27 26 2 46 46 H 1.09000 * 109.47051 * 299.99115 * 27 26 2 47 47 H 1.08994 * 109.47726 * 59.99418 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 -0.0037 5 6 4.7478 1.5999 -0.0084 6 7 5.1394 1.9013 1.3750 7 6 6.3131 2.7840 1.4095 8 6 6.6896 3.0753 2.8636 9 1 6.8367 2.1355 3.3960 10 6 5.5659 3.8697 3.5322 11 6 7.9834 3.8910 2.9019 12 7 8.4082 4.0679 4.2927 13 6 9.5338 4.7548 4.5714 14 8 10.1924 5.2307 3.6710 15 6 9.9742 4.9315 6.0018 16 16 11.5080 5.8915 6.0467 17 6 11.7846 5.9448 7.7860 18 1 11.0908 5.4621 8.4583 19 6 12.8949 6.6064 8.2921 20 7 13.1020 6.6458 9.5914 21 14 14.0954 7.4408 7.1294 22 1 13.6705 8.8457 6.9035 23 1 15.4551 7.4247 7.7263 24 1 14.1150 6.7152 5.8338 25 8 3.5733 -0.6446 0.0033 26 6 2.2997 -1.0844 0.0057 27 6 1.8493 -2.5225 0.0126 28 1 -0.3634 0.0053 1.0276 29 1 -0.3634 0.8872 -0.5185 30 1 -0.3634 -0.8926 -0.5091 31 1 4.5038 2.5271 -0.5271 32 1 5.5729 1.1040 -0.5197 33 1 5.3086 1.0537 1.8957 34 1 6.0794 3.7193 0.9008 35 1 7.1492 2.2967 0.9080 36 1 4.6441 3.2885 3.5049 37 1 5.8339 4.0768 4.5682 38 1 5.4188 4.8093 2.9997 39 1 7.8113 4.8668 2.4476 40 1 8.7612 3.3647 2.3486 41 1 7.8817 3.6870 5.0129 42 1 9.1993 5.4590 6.5579 43 1 10.1436 3.9539 6.4532 44 1 13.8777 7.1084 9.9452 45 1 2.7214 -3.1764 0.0157 46 1 1.2501 -2.7112 0.9034 47 1 1.2506 -2.7201 -0.8765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732334385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = -60.149135 kcal Electronic energy + Delta-G solvation = -25555.586034 eV Core-core repulsion = 21671.509378 eV Total energy + Delta-G solvation = -3884.076655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.36893 -40.72143 -38.58792 -36.38369 -36.20357 -34.67281 -34.31789 -33.22277 -30.96593 -30.11146 -28.94489 -27.89715 -27.31327 -25.68751 -24.36817 -22.77283 -21.81309 -21.64613 -21.27770 -19.85660 -17.97622 -17.94837 -17.55073 -17.37913 -17.05998 -16.93992 -16.66439 -16.05909 -15.69369 -15.51082 -15.30668 -14.99384 -14.90341 -14.59503 -14.45901 -14.21254 -13.93209 -13.81965 -13.65967 -13.53735 -13.34891 -13.29219 -13.23550 -13.11567 -12.99936 -12.92960 -12.66828 -12.04436 -12.03422 -11.92285 -11.83171 -11.72927 -11.49549 -11.16815 -11.00324 -10.53344 -10.11254 -9.63526 -9.43623 -8.99193 -8.51276 -6.22120 0.36811 0.99729 1.31929 1.47158 1.53871 1.57984 1.58103 1.66313 2.23120 2.27368 2.71992 2.87106 2.91521 3.24453 3.77381 3.81640 3.83976 3.89058 4.00109 4.03969 4.15484 4.23942 4.30975 4.37323 4.47909 4.50771 4.60232 4.63049 4.66297 4.75456 4.77711 4.82276 4.83694 4.95420 4.98792 5.07284 5.10935 5.17455 5.26327 5.41894 5.42441 5.50577 5.70876 5.78911 6.11576 6.21849 6.47793 6.74749 6.93975 7.20544 8.61140 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.001378 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.157307 B =20315.567469 C =20495.122604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.044 4.044 3 N -0.494 5.494 4 C 0.181 3.819 5 C 0.163 3.837 6 N -0.686 5.686 7 C 0.072 3.928 8 C -0.086 4.086 9 H 0.089 0.911 10 C -0.138 4.138 11 C 0.126 3.874 12 N -0.710 5.710 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.112 4.112 16 S -0.176 6.176 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 O -0.214 6.214 26 C -0.054 4.054 27 C -0.066 4.066 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.348 0.652 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.616 -19.698 -22.172 39.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.163 4.163 3 N -0.225 5.225 4 C -0.026 4.026 5 C 0.033 3.967 6 N -0.319 5.319 7 C -0.057 4.057 8 C -0.105 4.105 9 H 0.107 0.893 10 C -0.195 4.195 11 C 0.002 3.998 12 N -0.364 5.364 13 C 0.320 3.680 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.051 5.949 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.159 4.159 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 O -0.101 6.101 26 C -0.107 4.107 27 C -0.122 4.122 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.253 0.747 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.045 -17.753 -23.459 39.292 hybrid contribution 0.636 -1.304 1.392 2.010 sum -25.409 -19.056 -22.068 38.675 Atomic orbital electron populations 1.20199 0.84622 1.04179 1.03525 1.22126 0.99463 0.87613 1.07132 1.70329 1.01483 1.32609 1.18031 1.26382 0.95789 0.79059 1.01400 1.20275 0.88670 0.95860 0.91850 1.60328 1.38599 1.21323 1.11636 1.21876 0.90446 0.97615 0.95777 1.21214 0.93020 0.99361 0.96897 0.89291 1.21730 0.98218 0.99785 0.99808 1.21393 0.96169 1.00382 0.81828 1.45730 1.25051 1.55536 1.10073 1.19929 0.80848 0.77620 0.89621 1.90689 1.55357 1.49639 1.48556 1.23282 1.00678 1.05083 0.97292 1.84699 1.29636 1.71691 1.08897 1.22475 1.13832 1.40723 0.90762 0.91985 1.25555 0.98523 0.95398 0.96393 1.70013 1.29779 1.42819 1.12899 0.85868 0.79286 0.80391 0.80833 1.18708 1.18304 1.16066 1.84383 1.31218 1.24272 1.70247 1.23985 0.80085 0.99891 1.06706 1.20488 1.02557 0.83733 1.05463 0.90127 0.91281 0.88295 0.86456 0.90285 0.83358 0.89850 0.93125 0.91544 0.92869 0.93185 0.92072 0.91821 0.74744 0.86926 0.86806 0.91369 0.89873 0.87717 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.22 71.24 0.73 0.05 16 2 C -0.04 -0.74 7.11 41.26 0.29 -0.45 16 3 N -0.49 -10.60 11.29 -291.98 -3.30 -13.89 16 4 C 0.18 3.24 7.86 88.34 0.69 3.93 16 5 C 0.16 1.95 6.31 85.56 0.54 2.49 16 6 N -0.69 -8.16 5.94 -517.94 -3.08 -11.24 16 7 C 0.07 0.77 5.07 86.31 0.44 1.21 16 8 C -0.09 -1.07 2.57 -10.79 -0.03 -1.09 16 9 H 0.09 0.95 8.14 -2.38 -0.02 0.94 16 10 C -0.14 -1.95 8.95 71.98 0.64 -1.30 16 11 C 0.13 2.37 5.06 86.38 0.44 2.81 16 12 N -0.71 -15.97 5.28 -463.07 -2.45 -18.42 16 13 C 0.53 18.03 7.85 87.66 0.69 18.71 16 14 O -0.56 -23.83 15.86 -3.04 -0.05 -23.88 16 15 C -0.11 -4.19 6.16 71.24 0.44 -3.76 16 16 S -0.18 -8.89 18.55 -56.49 -1.05 -9.93 16 17 C -0.53 -30.95 10.04 67.96 0.68 -30.27 16 18 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 19 C 0.05 2.75 5.50 84.86 0.47 3.21 16 20 N -0.92 -55.94 13.97 21.65 0.30 -55.63 16 21 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 25 O -0.21 -3.76 10.78 -3.73 -0.04 -3.80 16 26 C -0.05 -0.78 7.39 24.79 0.18 -0.60 16 27 C -0.07 -0.33 9.96 71.23 0.71 0.38 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.41 7.89 -2.39 -0.02 0.40 16 31 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.35 3.85 8.72 -89.69 -0.78 3.07 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 1.00 7.75 -2.39 -0.02 0.98 16 37 H 0.05 0.74 7.18 -2.39 -0.02 0.72 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.42 6.90 7.66 -92.71 -0.71 6.19 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -79.99 408.07 -1.39 -81.38 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.55 Total: 13.13 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 6.91 Total: -4.67 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -8.52 Total: -99.19 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.09 Total: -27.69 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -79.99 -1.39 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732334385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.228 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds