Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30252 * 125.61833 * 2 1 4 4 C 1.34479 * 108.70034 * 179.77530 * 3 2 1 5 5 C 1.50700 * 126.16775 * 180.26680 * 4 3 2 6 6 C 1.34341 * 107.66713 * 0.39662 * 4 3 2 7 7 C 1.50690 * 126.44207 * 179.87673 * 6 4 3 8 8 N 1.46900 * 109.47106 * 89.71034 * 7 6 4 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47039 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47217 * 305.00455 * 10 9 8 12 12 C 1.53008 * 109.46816 * 65.00174 * 10 9 8 13 13 C 1.52996 * 109.47336 * 184.99857 * 10 9 8 14 14 N 1.46498 * 109.47059 * 175.00083 * 13 10 9 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 O 1.33966 * 125.61572 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46889 * 269.97664 * 1 2 3 29 29 H 1.08996 * 109.46886 * 29.98014 * 1 2 3 30 30 H 1.09001 * 109.47190 * 149.97393 * 1 2 3 31 31 H 1.09001 * 109.47110 * 270.14795 * 5 4 3 32 32 H 1.09003 * 109.46680 * 30.14751 * 5 4 3 33 33 H 1.09000 * 109.46946 * 150.14861 * 5 4 3 34 34 H 1.09003 * 109.47278 * 329.70870 * 7 6 4 35 35 H 1.09004 * 109.47079 * 209.71040 * 7 6 4 36 36 H 1.00897 * 111.00127 * 56.04230 * 8 7 6 37 37 H 1.09005 * 109.47147 * 60.00369 * 9 8 7 38 38 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 39 39 H 1.08995 * 109.47053 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46930 * 299.99894 * 12 10 9 41 41 H 1.09000 * 109.46973 * 59.99593 * 12 10 9 42 42 H 1.09004 * 109.47066 * 55.00351 * 13 10 9 43 43 H 1.08994 * 109.46974 * 295.00498 * 13 10 9 44 44 H 0.97001 * 120.00384 * 0.02562 * 14 13 10 45 45 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 46 46 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 47 47 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0050 5 6 4.7571 1.5726 0.0124 6 6 3.5698 -0.6758 -0.0007 7 6 4.7937 -1.5549 -0.0008 8 7 5.1912 -1.8409 1.3842 9 6 6.3835 -2.6982 1.4233 10 6 6.7666 -2.9730 2.8789 11 1 6.8937 -2.0273 3.4059 12 6 5.6602 -3.7875 3.5523 13 6 8.0775 -3.7607 2.9213 14 7 8.5063 -3.9205 4.3130 15 6 9.6406 -4.5913 4.5958 16 8 10.3090 -5.0581 3.6978 17 6 10.0786 -4.7611 6.0277 18 16 11.6264 -5.6981 6.0782 19 6 11.8985 -5.7456 7.8184 20 1 11.1951 -5.2734 8.4882 21 6 13.0165 -6.3909 8.3286 22 7 13.8737 -6.9670 7.5124 23 14 13.3055 -6.4407 10.1734 24 1 12.6556 -7.6481 10.7438 25 1 14.7646 -6.4891 10.4448 26 1 12.7257 -5.2248 10.7983 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.0507 1.7952 -1.0134 32 1 4.5114 2.5003 0.5295 33 1 5.5806 1.0771 0.5266 34 1 5.6081 -1.0440 -0.5145 35 1 4.5696 -2.4897 -0.5149 36 1 4.4303 -2.2565 1.9003 37 1 7.2092 -2.1955 0.9194 38 1 6.1701 -3.6407 0.9192 39 1 5.9328 -3.9828 4.5894 40 1 4.7262 -3.2262 3.5221 41 1 5.5330 -4.7330 3.0253 42 1 8.8438 -3.2211 2.3647 43 1 7.9261 -4.7424 2.4727 44 1 7.9717 -3.5474 5.0312 45 1 10.2326 -3.7811 6.4792 46 1 9.3093 -5.2994 6.5815 47 1 14.6551 -7.4175 7.8689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732335422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -31.895943 kcal Electronic energy + Delta-G solvation = -25718.025519 eV Core-core repulsion = 21835.174014 eV Total energy + Delta-G solvation = -3882.851505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.74469 -39.36529 -37.88448 -35.64626 -35.40462 -33.45725 -32.42862 -32.21755 -29.86479 -29.40217 -28.42209 -26.77829 -25.52308 -24.95670 -23.51419 -22.15082 -21.04634 -20.62847 -20.21497 -17.85544 -17.31209 -17.17406 -16.66789 -16.30539 -15.99052 -15.52247 -15.04855 -14.89469 -14.80039 -14.72179 -14.20671 -13.96133 -13.75438 -13.51401 -13.47736 -13.32812 -13.23272 -13.09832 -12.91511 -12.84937 -12.64241 -12.53460 -12.32989 -11.84775 -11.42791 -11.26672 -11.21296 -11.11334 -11.05942 -11.02214 -10.87489 -10.75582 -9.81400 -9.40806 -9.14114 -9.06874 -8.89570 -8.85342 -8.23421 -6.49794 -6.21568 -3.92075 0.97250 2.17618 2.25283 3.02719 3.10932 3.22426 3.27838 3.31769 3.53019 3.64050 3.87377 4.20657 4.20810 4.42922 4.51131 4.54079 4.57011 4.65507 4.83072 4.83908 4.88937 5.07641 5.12129 5.13650 5.15189 5.24784 5.26796 5.30708 5.33296 5.40493 5.49479 5.56521 5.61465 5.65360 5.68383 5.71771 5.89255 5.93973 5.99309 5.99756 6.14452 6.35117 6.62962 6.74995 7.35210 7.59726 7.71289 8.35368 8.62186 9.23810 10.85893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.001406 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.549141 B =19905.646649 C =20088.173258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.484 5.484 4 C 0.013 3.987 5 C -0.074 4.074 6 C -0.056 4.056 7 C 0.149 3.851 8 N -0.684 5.684 9 C 0.066 3.934 10 C -0.101 4.101 11 H 0.089 0.911 12 C -0.152 4.152 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 O -0.203 6.203 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.346 0.654 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.808 14.267 -15.890 34.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 N -0.215 5.215 4 C -0.107 4.107 5 C -0.131 4.131 6 C -0.109 4.109 7 C 0.020 3.980 8 N -0.317 5.317 9 C -0.064 4.064 10 C -0.120 4.120 11 H 0.107 0.893 12 C -0.210 4.210 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 O -0.091 6.091 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.395 14.520 -17.364 34.019 hybrid contribution -1.074 -0.860 2.325 2.701 sum -26.469 13.660 -15.040 33.368 Atomic orbital electron populations 1.20269 0.81270 1.05120 1.04791 1.26243 0.96393 0.78665 1.00224 1.70386 1.01822 1.30315 1.18996 1.21538 0.93242 0.92123 1.03833 1.20173 0.92130 0.98082 1.02741 1.22959 0.83191 0.94991 1.09778 1.20238 0.89932 0.96645 0.91227 1.60548 1.08787 1.50469 1.11904 1.21940 0.92918 0.95072 0.96423 1.21359 0.94664 0.99916 0.96082 0.89304 1.21900 0.97980 0.99789 1.01295 1.21225 0.94713 1.00085 0.83732 1.45979 1.26170 1.58886 1.08180 1.20303 0.79798 0.76981 0.91185 1.90701 1.53309 1.47137 1.48135 1.23532 1.06264 1.05713 0.94911 1.85391 1.19728 1.68552 1.09726 1.22875 1.12219 1.41629 0.91695 0.90929 1.24989 0.94906 0.94578 0.99069 1.70018 1.11993 1.33480 1.34810 0.86171 0.77599 0.78609 0.83135 1.20282 1.20738 1.19696 1.84361 1.16693 1.37795 1.70224 0.88832 0.88074 0.89355 0.90876 0.90608 0.89822 0.87469 0.93135 0.83520 0.89988 0.94291 0.91954 0.92480 0.92472 0.91473 0.91666 0.76810 0.89220 0.89276 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.19 1.63 8.34 -12.94 -0.11 1.52 16 3 N -0.48 -5.07 11.29 -7.35 -0.08 -5.16 16 4 C 0.01 0.13 7.11 -82.81 -0.59 -0.46 16 5 C -0.07 -0.52 10.05 36.01 0.36 -0.16 16 6 C -0.06 -0.49 6.90 -35.69 -0.25 -0.74 16 7 C 0.15 0.95 5.84 -4.98 -0.03 0.92 16 8 N -0.68 -4.56 6.49 -115.05 -0.75 -5.31 16 9 C 0.07 0.43 5.14 -3.82 -0.02 0.41 16 10 C -0.10 -0.76 2.63 -90.62 -0.24 -1.00 16 11 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 12 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 13 C 0.13 1.37 5.06 -4.04 -0.02 1.35 16 14 N -0.74 -9.49 5.28 -60.30 -0.32 -9.81 16 15 C 0.53 9.81 7.85 -10.98 -0.09 9.73 16 16 O -0.52 -11.73 15.86 5.55 0.09 -11.64 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 O -0.20 -1.88 10.78 5.36 0.06 -1.82 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 34 H 0.11 0.56 7.81 -51.93 -0.41 0.15 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.35 2.34 6.97 -39.29 -0.27 2.07 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.46 7.18 -51.93 -0.37 0.09 16 40 H 0.06 0.35 6.68 -51.93 -0.35 0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.40 4.03 7.65 -40.82 -0.31 3.72 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -36.63 407.99 -8.78 -45.42 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.58 Total: -0.06 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.15 Total: -4.84 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.41 Total: -45.71 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.15 Total: -13.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.63 -8.78 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732335422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.521 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds