Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30252 * 125.61833 * 2 1 4 4 C 1.34479 * 108.70034 * 179.77530 * 3 2 1 5 5 C 1.50700 * 126.16775 * 180.26680 * 4 3 2 6 6 C 1.34341 * 107.66713 * 0.39662 * 4 3 2 7 7 C 1.50690 * 126.44207 * 179.87673 * 6 4 3 8 8 N 1.46900 * 109.47106 * 89.71034 * 7 6 4 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47039 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47217 * 305.00455 * 10 9 8 12 12 C 1.53008 * 109.46816 * 65.00174 * 10 9 8 13 13 C 1.52996 * 109.47336 * 184.99857 * 10 9 8 14 14 N 1.46498 * 109.47059 * 175.00083 * 13 10 9 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 O 1.33966 * 125.61572 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46889 * 269.97664 * 1 2 3 29 29 H 1.08996 * 109.46886 * 29.98014 * 1 2 3 30 30 H 1.09001 * 109.47190 * 149.97393 * 1 2 3 31 31 H 1.09001 * 109.47110 * 270.14795 * 5 4 3 32 32 H 1.09003 * 109.46680 * 30.14751 * 5 4 3 33 33 H 1.09000 * 109.46946 * 150.14861 * 5 4 3 34 34 H 1.09003 * 109.47278 * 329.70870 * 7 6 4 35 35 H 1.09004 * 109.47079 * 209.71040 * 7 6 4 36 36 H 1.00897 * 111.00127 * 56.04230 * 8 7 6 37 37 H 1.09005 * 109.47147 * 60.00369 * 9 8 7 38 38 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 39 39 H 1.08995 * 109.47053 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46930 * 299.99894 * 12 10 9 41 41 H 1.09000 * 109.46973 * 59.99593 * 12 10 9 42 42 H 1.09004 * 109.47066 * 55.00351 * 13 10 9 43 43 H 1.08994 * 109.46974 * 295.00498 * 13 10 9 44 44 H 0.97001 * 120.00384 * 0.02562 * 14 13 10 45 45 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 46 46 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 47 47 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0050 5 6 4.7571 1.5726 0.0124 6 6 3.5698 -0.6758 -0.0007 7 6 4.7937 -1.5549 -0.0008 8 7 5.1912 -1.8409 1.3842 9 6 6.3835 -2.6982 1.4233 10 6 6.7666 -2.9730 2.8789 11 1 6.8937 -2.0273 3.4059 12 6 5.6602 -3.7875 3.5523 13 6 8.0775 -3.7607 2.9213 14 7 8.5063 -3.9205 4.3130 15 6 9.6406 -4.5913 4.5958 16 8 10.3090 -5.0581 3.6978 17 6 10.0786 -4.7611 6.0277 18 16 11.6264 -5.6981 6.0782 19 6 11.8985 -5.7456 7.8184 20 1 11.1951 -5.2734 8.4882 21 6 13.0165 -6.3909 8.3286 22 7 13.8737 -6.9670 7.5124 23 14 13.3055 -6.4407 10.1734 24 1 12.6556 -7.6481 10.7438 25 1 14.7646 -6.4891 10.4448 26 1 12.7257 -5.2248 10.7983 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.0507 1.7952 -1.0134 32 1 4.5114 2.5003 0.5295 33 1 5.5806 1.0771 0.5266 34 1 5.6081 -1.0440 -0.5145 35 1 4.5696 -2.4897 -0.5149 36 1 4.4303 -2.2565 1.9003 37 1 7.2092 -2.1955 0.9194 38 1 6.1701 -3.6407 0.9192 39 1 5.9328 -3.9828 4.5894 40 1 4.7262 -3.2262 3.5221 41 1 5.5330 -4.7330 3.0253 42 1 8.8438 -3.2211 2.3647 43 1 7.9261 -4.7424 2.4727 44 1 7.9717 -3.5474 5.0312 45 1 10.2326 -3.7811 6.4792 46 1 9.3093 -5.2994 6.5815 47 1 14.6551 -7.4175 7.8689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732335422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = -60.730940 kcal Electronic energy + Delta-G solvation = -25719.275899 eV Core-core repulsion = 21835.174014 eV Total energy + Delta-G solvation = -3884.101884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.36095 -40.68422 -38.64344 -36.42604 -36.13862 -34.58186 -34.28085 -32.97724 -30.90292 -30.23300 -29.01561 -27.78774 -27.41400 -25.70438 -24.13007 -22.76910 -21.78899 -21.63079 -21.15204 -19.79585 -17.95778 -17.94677 -17.57690 -17.42494 -16.98969 -16.87277 -16.66376 -15.92135 -15.73351 -15.48166 -15.44942 -14.89040 -14.67985 -14.43985 -14.20990 -14.10209 -13.97404 -13.87124 -13.70957 -13.55799 -13.45451 -13.30146 -13.15861 -13.09535 -12.88310 -12.84171 -12.61815 -12.09568 -11.89948 -11.88514 -11.77809 -11.70827 -11.52795 -11.13739 -10.95045 -10.27022 -10.09097 -9.68410 -9.43039 -8.66013 -8.34182 -6.12203 0.36804 1.27877 1.42919 1.47782 1.57428 1.59629 1.63195 1.67346 2.26634 2.31319 3.00067 3.05516 3.20529 3.33853 3.67823 3.84546 3.87354 3.91065 3.96778 4.06302 4.14111 4.30900 4.35382 4.51447 4.52447 4.52715 4.58691 4.61228 4.68444 4.73904 4.74909 4.78956 4.84280 4.93580 4.95192 4.99407 5.05113 5.18668 5.24221 5.34459 5.42434 5.44093 5.49158 5.83766 6.20360 6.23477 6.52099 6.73222 7.07244 7.26232 8.75074 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.001406 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.549141 B =19905.646649 C =20088.173258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.188 3.812 3 N -0.520 5.520 4 C -0.008 4.008 5 C -0.070 4.070 6 C -0.064 4.064 7 C 0.152 3.848 8 N -0.685 5.685 9 C 0.070 3.930 10 C -0.086 4.086 11 H 0.093 0.907 12 C -0.151 4.151 13 C 0.126 3.874 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 O -0.214 6.214 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.345 0.655 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.780 15.175 -14.854 35.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.251 5.251 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.116 4.116 7 C 0.023 3.977 8 N -0.318 5.318 9 C -0.059 4.059 10 C -0.105 4.105 11 H 0.111 0.889 12 C -0.209 4.209 13 C 0.002 3.998 14 N -0.365 5.365 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 O -0.102 6.102 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.424 15.467 -16.325 35.466 hybrid contribution -0.608 -1.076 1.915 2.279 sum -28.032 14.392 -14.410 34.649 Atomic orbital electron populations 1.20525 0.78379 1.06418 1.06069 1.27174 0.97879 0.78137 0.98652 1.70393 1.02638 1.31477 1.20596 1.21958 0.93626 0.92969 1.04227 1.20204 0.91571 0.97525 1.03444 1.23302 0.83569 0.95127 1.09626 1.20306 0.89469 0.96720 0.91174 1.60524 1.08742 1.50422 1.12134 1.21874 0.93064 0.95367 0.95617 1.21216 0.92858 0.99416 0.97044 0.88913 1.21897 0.98253 0.99735 1.00982 1.21372 0.96230 1.00233 0.81952 1.45732 1.24182 1.56591 1.09950 1.20045 0.80864 0.77337 0.89900 1.90691 1.55243 1.49619 1.49002 1.23380 1.02495 1.05467 0.96814 1.85566 1.25303 1.70866 1.10730 1.23217 1.12750 1.41794 0.91768 0.89913 1.26116 0.94424 0.93827 1.04677 1.70182 1.12695 1.34505 1.37392 0.84959 0.77636 0.79265 0.76149 1.19311 1.20296 1.18214 1.84370 1.17102 1.38243 1.70445 0.87401 0.87235 0.87538 0.89835 0.91131 0.89060 0.86258 0.92505 0.83561 0.89585 0.93918 0.92124 0.91308 0.92766 0.92059 0.92425 0.74776 0.87255 0.87240 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.19 3.06 8.34 88.35 0.74 3.79 16 3 N -0.52 -10.74 11.29 -291.97 -3.30 -14.04 16 4 C -0.01 -0.14 7.11 41.26 0.29 0.15 16 5 C -0.07 -0.93 10.05 71.24 0.72 -0.22 16 6 C -0.06 -1.05 6.90 24.79 0.17 -0.88 16 7 C 0.15 1.71 5.84 85.55 0.50 2.20 16 8 N -0.69 -7.79 6.49 -517.92 -3.36 -11.15 16 9 C 0.07 0.76 5.14 86.30 0.44 1.21 16 10 C -0.09 -1.10 2.63 -10.79 -0.03 -1.13 16 11 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 12 C -0.15 -1.78 8.84 71.98 0.64 -1.14 16 13 C 0.13 2.54 5.06 86.38 0.44 2.97 16 14 N -0.71 -16.98 5.28 -463.07 -2.45 -19.42 16 15 C 0.53 19.30 7.85 87.66 0.69 19.98 16 16 O -0.57 -26.04 15.86 -3.04 -0.05 -26.09 16 17 C -0.13 -5.10 6.16 71.24 0.44 -4.67 16 18 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 19 C -0.55 -31.23 9.50 67.96 0.65 -30.59 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 23 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 O -0.21 -3.76 10.78 -3.74 -0.04 -3.80 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.03 7.80 -2.39 -0.02 1.01 16 34 H 0.12 1.03 7.81 -2.39 -0.02 1.01 16 35 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.35 3.98 6.97 -89.70 -0.63 3.36 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.04 0.45 8.14 -2.39 -0.02 0.44 16 39 H 0.06 0.74 7.18 -2.39 -0.02 0.72 16 40 H 0.07 0.68 6.68 -2.39 -0.02 0.66 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.41 7.22 7.65 -92.71 -0.71 6.51 16 45 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 46 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 47 H 0.27 15.44 8.31 -92.72 -0.77 14.67 16 Total: -1.00 -81.70 407.99 -1.50 -83.20 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -0.35 Total: 17.69 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.89 Total: -6.61 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -8.82 Total: -100.29 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.09 Total: -29.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.70 -1.50 -83.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732335422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.469 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds