Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47555 * 2 1 4 4 N 1.46500 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99477 * 264.79663 * 4 3 2 6 6 H 1.08003 * 120.00103 * 323.47862 * 5 4 3 7 7 C 1.38816 * 120.00052 * 143.48344 * 5 4 3 8 8 N 1.31619 * 120.00170 * 156.11025 * 7 5 4 9 9 Si 1.86796 * 119.99843 * 336.11790 * 7 5 4 10 10 H 1.48504 * 109.47655 * 95.40932 * 9 7 5 11 11 H 1.48497 * 109.47274 * 215.41134 * 9 7 5 12 12 H 1.48506 * 109.47270 * 335.40591 * 9 7 5 13 13 C 1.46499 * 120.00328 * 84.79540 * 4 3 2 14 14 C 1.50695 * 109.46966 * 89.99765 * 13 4 3 15 15 N 1.30442 * 126.42927 * 87.55657 * 14 13 4 16 16 N 1.28530 * 110.11405 * 179.97438 * 15 14 13 17 17 C 1.31480 * 109.89504 * 0.02562 * 16 15 14 18 18 N 1.36471 * 106.78201 * 0.02562 * 17 16 15 19 19 C 1.38905 * 120.92918 * 179.97438 * 18 17 16 20 20 C 1.38664 * 121.31305 * 180.02562 * 19 18 17 21 21 C 1.38064 * 119.87881 * 179.97438 * 20 19 18 22 22 C 1.38611 * 120.59734 * 0.02562 * 21 20 19 23 23 C 1.37895 * 120.34552 * 0.02562 * 22 21 20 24 24 C 1.39363 * 119.60445 * 359.97438 * 23 22 21 25 25 C 1.47424 * 121.32488 * 180.02562 * 24 23 22 26 26 O 1.21632 * 120.57700 * 359.94851 * 25 24 23 27 27 N 1.34932 * 118.85016 * 179.97438 * 25 24 23 28 28 C 1.46505 * 119.50834 * 180.02562 * 27 25 24 29 29 H 1.09006 * 109.46569 * 59.99779 * 1 2 3 30 30 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47161 * 300.00498 * 1 2 3 32 32 H 1.09009 * 109.47137 * 239.99620 * 2 1 3 33 33 H 1.09000 * 109.46823 * 120.00613 * 2 1 3 34 34 H 1.08997 * 109.46560 * 59.99532 * 3 2 1 35 35 H 1.09000 * 109.46684 * 299.99886 * 3 2 1 36 36 H 0.96997 * 119.99980 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46706 * 330.00211 * 13 4 3 38 38 H 1.09000 * 109.47155 * 209.99936 * 13 4 3 39 39 H 1.08002 * 120.05938 * 0.03006 * 20 19 18 40 40 H 1.07997 * 119.70193 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.82970 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.20194 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46852 * 269.97676 * 28 27 25 44 44 H 1.08995 * 109.47428 * 29.97353 * 28 27 25 45 45 H 1.09001 * 109.47584 * 149.98042 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5497 1.1802 6 1 3.8096 2.1804 1.9700 7 6 5.3740 0.8479 1.3621 8 7 6.2620 1.2707 2.2367 9 14 5.7067 -0.6965 0.3654 10 1 6.5199 -0.3500 -0.8280 11 1 6.4469 -1.6754 1.2015 12 1 4.4178 -1.2921 -0.0698 13 6 4.2371 1.3274 -1.2644 14 6 4.4881 2.7029 -1.8264 15 7 5.5043 3.4756 -1.5584 16 7 5.4048 4.5788 -2.2104 17 6 4.3091 4.5717 -2.9371 18 7 3.6940 3.3747 -2.7109 19 6 2.4967 3.0572 -3.3396 20 6 1.8646 1.8436 -3.1152 21 6 0.6750 1.5590 -3.7556 22 6 0.1040 2.4763 -4.6238 23 6 0.7187 3.6878 -4.8602 24 6 1.9198 3.9870 -4.2199 25 6 2.6090 5.2708 -4.4443 26 8 2.1401 6.1010 -5.1995 27 7 3.7692 5.5086 -3.7979 28 6 4.4660 6.7798 -4.0099 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 7.0893 0.7805 2.3636 37 1 3.6477 0.7470 -1.9741 38 1 5.1896 0.8274 -1.0884 39 1 2.3016 1.1227 -2.4401 40 1 0.1849 0.6131 -3.5784 41 1 -0.8266 2.2406 -5.1184 42 1 0.2719 4.4007 -5.5374 43 1 5.1600 6.6790 -4.8442 44 1 3.7386 7.5598 -4.2347 45 1 5.0178 7.0465 -3.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 130.060463 kcal Electronic energy + Delta-G solvation = -31113.300068 eV Core-core repulsion = 27134.320320 eV Total energy + Delta-G solvation = -3978.979748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.37981 -40.58785 -39.03160 -36.92226 -36.31481 -34.85286 -33.20374 -32.05703 -31.48690 -30.10178 -29.96368 -27.78883 -26.87538 -26.01988 -24.04076 -23.77672 -22.94523 -22.34817 -20.93719 -20.23576 -19.53894 -19.05492 -17.43900 -17.13331 -16.92065 -16.49049 -15.92573 -15.58970 -15.26489 -15.01697 -14.68828 -14.55431 -14.38165 -13.96529 -13.91664 -13.77084 -12.99248 -12.93856 -12.81736 -12.57561 -12.54495 -12.45618 -12.09728 -11.70562 -11.41816 -11.31570 -11.28675 -10.96406 -10.91440 -10.78982 -10.70397 -10.59565 -10.31997 -10.14873 -9.93481 -9.69451 -9.44294 -8.75272 -8.65532 -8.17870 -7.20895 -6.11425 -3.54601 0.30833 0.66599 1.81965 1.87817 2.44670 2.51303 3.14082 3.22382 3.35476 3.38645 3.51704 3.83233 4.09034 4.38725 4.45087 4.53110 4.70252 4.77009 4.85763 4.92248 5.05926 5.09980 5.21377 5.26204 5.30728 5.38953 5.43851 5.47962 5.54033 5.60172 5.74424 5.80292 5.88047 5.91824 6.02223 6.05232 6.15372 6.16483 6.22086 6.29925 6.32205 6.36627 6.63061 6.63873 6.83313 7.08163 7.52036 7.81798 8.22964 8.73867 8.96178 9.53318 9.83707 11.02930 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.005313 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.099214 B = 5269.057061 C = 7040.658458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.138 3.862 4 N -0.581 5.581 5 C -0.281 4.281 6 H 0.082 0.918 7 C 0.053 3.947 8 N -0.875 5.875 9 Si 0.858 3.142 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.262 1.262 13 C 0.202 3.798 14 C 0.203 3.797 15 N -0.239 5.239 16 N -0.289 5.289 17 C 0.377 3.623 18 N -0.441 5.441 19 C 0.186 3.814 20 C -0.152 4.152 21 C -0.055 4.055 22 C -0.139 4.139 23 C -0.027 4.027 24 C -0.168 4.168 25 C 0.567 3.433 26 O -0.510 6.510 27 N -0.506 5.506 28 C 0.084 3.916 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 0.638 -14.459 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.300 5.300 5 C -0.409 4.409 6 H 0.100 0.900 7 C -0.150 4.150 8 N -0.513 5.513 9 Si 0.687 3.313 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.187 1.187 13 C 0.073 3.927 14 C -0.064 4.064 15 N -0.074 5.074 16 N -0.135 5.135 17 C 0.025 3.975 18 N -0.133 5.133 19 C 0.089 3.911 20 C -0.171 4.171 21 C -0.074 4.074 22 C -0.158 4.158 23 C -0.047 4.047 24 C -0.174 4.174 25 C 0.358 3.642 26 O -0.384 6.384 27 N -0.235 5.235 28 C -0.057 4.057 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.175 0.825 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.420 1.621 -14.046 18.175 hybrid contribution -0.670 -1.124 -0.879 1.576 sum -12.090 0.497 -14.924 19.213 Atomic orbital electron populations 1.21732 0.96719 1.00839 1.01273 1.22135 0.94272 0.99968 1.02243 1.21255 0.83243 0.94233 0.99991 1.44212 1.00701 1.83845 1.01247 1.18689 1.05860 1.24206 0.92131 0.90030 1.25364 0.96119 0.97379 0.96186 1.69881 1.07207 1.37885 1.36322 0.87215 0.78529 0.85725 0.79861 1.20720 1.22110 1.18684 1.20379 0.99296 0.84828 0.88230 1.27318 0.87601 1.00894 0.90634 1.74388 1.18965 0.97314 1.16741 1.74737 1.12695 1.16628 1.09400 1.21493 0.93547 0.83997 0.98503 1.44070 1.18504 1.15170 1.35570 1.17880 0.84990 0.95228 0.93040 1.21496 0.97090 0.95923 1.02601 1.21330 0.93397 0.99504 0.93215 1.21246 1.01101 0.93660 0.99800 1.21038 0.91194 0.96695 0.95732 1.19509 0.99556 0.94546 1.03779 1.18022 0.79187 0.87130 0.79847 1.90827 1.64645 1.47198 1.35750 1.44218 1.22453 1.16700 1.40113 1.21977 0.97639 0.82234 1.03843 0.93416 0.93352 0.92878 0.93201 0.91094 0.92066 0.94232 0.92288 0.91478 0.88555 0.82516 0.84075 0.84294 0.83534 0.90918 0.89030 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.15 -2.21 6.12 -26.73 -0.16 -2.38 16 3 C 0.14 2.43 5.08 -4.04 -0.02 2.41 16 4 N -0.58 -12.59 2.08 -174.61 -0.36 -12.95 16 5 C -0.28 -7.38 9.89 -15.06 -0.15 -7.53 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.05 1.45 5.28 -17.43 -0.09 1.36 16 8 N -0.88 -25.81 13.97 55.49 0.78 -25.04 16 9 Si 0.86 20.26 25.11 -169.99 -4.27 15.99 16 10 H -0.28 -6.51 6.65 56.52 0.38 -6.14 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.20 4.15 4.57 -5.20 -0.02 4.12 16 14 C 0.20 4.28 7.70 -154.08 -1.19 3.10 16 15 N -0.24 -5.64 12.18 32.98 0.40 -5.24 16 16 N -0.29 -6.17 11.99 30.29 0.36 -5.81 16 17 C 0.38 7.04 8.28 -319.06 -2.64 4.40 16 18 N -0.44 -8.09 3.01 -58.27 -0.18 -8.27 16 19 C 0.19 2.81 6.65 -83.67 -0.56 2.26 16 20 C -0.15 -1.90 7.34 -39.49 -0.29 -2.19 16 21 C -0.06 -0.50 10.02 -39.51 -0.40 -0.89 16 22 C -0.14 -1.13 10.03 -39.57 -0.40 -1.53 16 23 C -0.03 -0.28 9.65 -39.29 -0.38 -0.66 16 24 C -0.17 -2.32 5.88 -104.91 -0.62 -2.94 16 25 C 0.57 8.64 7.64 -12.45 -0.10 8.55 16 26 O -0.51 -8.06 16.10 5.25 0.08 -7.98 16 27 N -0.51 -7.95 3.06 -125.29 -0.38 -8.33 16 28 C 0.08 1.03 10.35 59.85 0.62 1.65 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.13 8.00 -51.93 -0.42 0.72 16 35 H 0.04 0.63 5.09 -51.93 -0.26 0.37 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.14 5.19 -51.93 -0.27 0.87 16 38 H 0.10 2.19 3.25 -51.93 -0.17 2.02 16 39 H 0.16 2.11 2.68 -52.49 -0.14 1.97 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.15 1.31 7.76 -52.49 -0.41 0.91 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.00 7.41 -51.93 -0.38 0.62 16 45 H 0.09 1.14 7.87 -51.93 -0.41 0.73 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -32.65 360.98 -9.55 -42.20 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.41 Total: 1.61 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -6.02 Total: 8.37 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.62 Total: -65.63 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.08 Total: -7.98 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.27 Total: 15.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.65 -9.55 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.263 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds