Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47555 * 2 1 4 4 N 1.46500 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99477 * 264.79663 * 4 3 2 6 6 H 1.08003 * 120.00103 * 323.47862 * 5 4 3 7 7 C 1.38816 * 120.00052 * 143.48344 * 5 4 3 8 8 N 1.31619 * 120.00170 * 156.11025 * 7 5 4 9 9 Si 1.86796 * 119.99843 * 336.11790 * 7 5 4 10 10 H 1.48504 * 109.47655 * 95.40932 * 9 7 5 11 11 H 1.48497 * 109.47274 * 215.41134 * 9 7 5 12 12 H 1.48506 * 109.47270 * 335.40591 * 9 7 5 13 13 C 1.46499 * 120.00328 * 84.79540 * 4 3 2 14 14 C 1.50695 * 109.46966 * 89.99765 * 13 4 3 15 15 N 1.30442 * 126.42927 * 87.55657 * 14 13 4 16 16 N 1.28530 * 110.11405 * 179.97438 * 15 14 13 17 17 C 1.31480 * 109.89504 * 0.02562 * 16 15 14 18 18 N 1.36471 * 106.78201 * 0.02562 * 17 16 15 19 19 C 1.38905 * 120.92918 * 179.97438 * 18 17 16 20 20 C 1.38664 * 121.31305 * 180.02562 * 19 18 17 21 21 C 1.38064 * 119.87881 * 179.97438 * 20 19 18 22 22 C 1.38611 * 120.59734 * 0.02562 * 21 20 19 23 23 C 1.37895 * 120.34552 * 0.02562 * 22 21 20 24 24 C 1.39363 * 119.60445 * 359.97438 * 23 22 21 25 25 C 1.47424 * 121.32488 * 180.02562 * 24 23 22 26 26 O 1.21632 * 120.57700 * 359.94851 * 25 24 23 27 27 N 1.34932 * 118.85016 * 179.97438 * 25 24 23 28 28 C 1.46505 * 119.50834 * 180.02562 * 27 25 24 29 29 H 1.09006 * 109.46569 * 59.99779 * 1 2 3 30 30 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47161 * 300.00498 * 1 2 3 32 32 H 1.09009 * 109.47137 * 239.99620 * 2 1 3 33 33 H 1.09000 * 109.46823 * 120.00613 * 2 1 3 34 34 H 1.08997 * 109.46560 * 59.99532 * 3 2 1 35 35 H 1.09000 * 109.46684 * 299.99886 * 3 2 1 36 36 H 0.96997 * 119.99980 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46706 * 330.00211 * 13 4 3 38 38 H 1.09000 * 109.47155 * 209.99936 * 13 4 3 39 39 H 1.08002 * 120.05938 * 0.03006 * 20 19 18 40 40 H 1.07997 * 119.70193 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.82970 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.20194 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46852 * 269.97676 * 28 27 25 44 44 H 1.08995 * 109.47428 * 29.97353 * 28 27 25 45 45 H 1.09001 * 109.47584 * 149.98042 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5497 1.1802 6 1 3.8096 2.1804 1.9700 7 6 5.3740 0.8479 1.3621 8 7 6.2620 1.2707 2.2367 9 14 5.7067 -0.6965 0.3654 10 1 6.5199 -0.3500 -0.8280 11 1 6.4469 -1.6754 1.2015 12 1 4.4178 -1.2921 -0.0698 13 6 4.2371 1.3274 -1.2644 14 6 4.4881 2.7029 -1.8264 15 7 5.5043 3.4756 -1.5584 16 7 5.4048 4.5788 -2.2104 17 6 4.3091 4.5717 -2.9371 18 7 3.6940 3.3747 -2.7109 19 6 2.4967 3.0572 -3.3396 20 6 1.8646 1.8436 -3.1152 21 6 0.6750 1.5590 -3.7556 22 6 0.1040 2.4763 -4.6238 23 6 0.7187 3.6878 -4.8602 24 6 1.9198 3.9870 -4.2199 25 6 2.6090 5.2708 -4.4443 26 8 2.1401 6.1010 -5.1995 27 7 3.7692 5.5086 -3.7979 28 6 4.4660 6.7798 -4.0099 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 7.0893 0.7805 2.3636 37 1 3.6477 0.7470 -1.9741 38 1 5.1896 0.8274 -1.0884 39 1 2.3016 1.1227 -2.4401 40 1 0.1849 0.6131 -3.5784 41 1 -0.8266 2.2406 -5.1184 42 1 0.2719 4.4007 -5.5374 43 1 5.1600 6.6790 -4.8442 44 1 3.7386 7.5598 -4.2347 45 1 5.0178 7.0465 -3.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049981174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 112.351068 kcal Electronic energy + Delta-G solvation = -31114.068005 eV Core-core repulsion = 27134.320320 eV Total energy + Delta-G solvation = -3979.747685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.80150 -41.77134 -40.05389 -38.47913 -37.57869 -36.06609 -34.67826 -33.57323 -32.73407 -31.48142 -31.12263 -28.83822 -28.38552 -27.61751 -25.18604 -24.94368 -24.23610 -23.74310 -22.23571 -21.61705 -20.75106 -20.20969 -19.09942 -18.44261 -18.32996 -17.71826 -17.27432 -17.00026 -16.64166 -16.06886 -15.96114 -15.79036 -15.50516 -15.33355 -15.08143 -14.82763 -14.53538 -14.50511 -14.07659 -13.97737 -13.69556 -13.51545 -13.16628 -12.86976 -12.75529 -12.72932 -12.51679 -12.37275 -12.29975 -12.16955 -12.11124 -11.94852 -11.88850 -11.56504 -11.40436 -11.29784 -10.67197 -10.33103 -9.80113 -9.59542 -9.02598 -8.20628 -5.62333 -0.65980 -0.31788 0.54735 0.63467 1.25415 1.29199 1.33302 1.43028 1.52952 1.69936 2.42034 2.57948 2.73418 2.89260 2.99486 3.26283 3.31985 3.47354 3.56219 3.77699 4.01181 4.12716 4.16624 4.19911 4.23741 4.30021 4.35835 4.42174 4.45527 4.53996 4.62479 4.63540 4.74915 4.78144 4.87176 4.91627 4.98484 5.13517 5.19150 5.25928 5.31250 5.34228 5.45738 5.61475 5.62519 5.81219 5.89174 6.15595 6.32903 6.83529 7.41506 7.52289 7.88341 8.98389 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.005313 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.099214 B = 5269.057061 C = 7040.658458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.137 3.863 4 N -0.590 5.590 5 C -0.267 4.267 6 H 0.034 0.966 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.304 1.304 12 H -0.227 1.227 13 C 0.205 3.795 14 C 0.197 3.803 15 N -0.291 5.291 16 N -0.322 5.322 17 C 0.388 3.612 18 N -0.436 5.436 19 C 0.145 3.855 20 C -0.158 4.158 21 C -0.037 4.037 22 C -0.111 4.111 23 C -0.025 4.025 24 C -0.184 4.184 25 C 0.563 3.437 26 O -0.518 6.518 27 N -0.509 5.509 28 C 0.079 3.921 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.185 0.815 41 H 0.187 0.813 42 H 0.163 0.837 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 -1.414 -18.361 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.014 3.986 4 N -0.310 5.310 5 C -0.397 4.397 6 H 0.052 0.948 7 C -0.203 4.203 8 N -0.576 5.576 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.232 1.232 12 H -0.149 1.149 13 C 0.076 3.924 14 C -0.073 4.073 15 N -0.127 5.127 16 N -0.168 5.168 17 C 0.033 3.967 18 N -0.128 5.128 19 C 0.050 3.950 20 C -0.178 4.178 21 C -0.055 4.055 22 C -0.129 4.129 23 C -0.044 4.044 24 C -0.190 4.190 25 C 0.356 3.644 26 O -0.393 6.393 27 N -0.239 5.239 28 C -0.061 4.061 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.202 0.798 41 H 0.204 0.796 42 H 0.180 0.820 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.011 -0.429 -18.007 24.100 hybrid contribution 0.501 -0.308 0.164 0.610 sum -15.511 -0.737 -17.843 23.654 Atomic orbital electron populations 1.21683 0.93515 1.02395 1.02262 1.22023 0.97006 0.97188 1.01714 1.21390 0.80736 0.96463 1.00058 1.44216 1.02227 1.84362 1.00212 1.18429 1.05765 1.22474 0.93023 0.94838 1.26017 0.95946 1.00433 0.97884 1.70036 1.08113 1.39653 1.39833 0.86178 0.79745 0.81118 0.78068 1.20454 1.23179 1.14892 1.20359 0.98769 0.84859 0.88389 1.27049 0.87902 1.00894 0.91461 1.74272 1.21272 0.98669 1.18507 1.74575 1.14688 1.16586 1.10948 1.21588 0.92852 0.84515 0.97704 1.43969 1.19380 1.14445 1.34963 1.18280 0.84626 0.97252 0.94874 1.21554 0.98423 0.94573 1.03233 1.21850 0.91387 1.01033 0.91268 1.21807 1.01665 0.91637 0.97832 1.21406 0.89730 0.98134 0.95121 1.19654 1.00922 0.93626 1.04751 1.18407 0.78822 0.87834 0.79376 1.90815 1.64685 1.47747 1.36099 1.44524 1.22940 1.16856 1.39557 1.22182 0.98259 0.81461 1.04244 0.90787 0.91485 0.93620 0.91487 0.93871 0.94205 0.91965 0.92723 0.87160 0.90962 0.83520 0.79814 0.79569 0.81982 0.89427 0.87524 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.91 71.98 0.71 -1.92 16 2 C -0.14 -3.81 6.12 30.59 0.19 -3.62 16 3 C 0.14 4.68 5.08 86.38 0.44 5.12 16 4 N -0.59 -25.83 2.08 -706.34 -1.47 -27.29 16 5 C -0.27 -14.83 9.89 84.03 0.83 -14.00 16 6 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 7 C 0.00 -0.24 5.28 84.86 0.45 0.20 16 8 N -0.93 -58.84 13.97 21.65 0.30 -58.54 16 9 Si 0.92 42.94 25.11 68.60 1.72 44.66 16 10 H -0.28 -12.68 6.65 99.48 0.66 -12.02 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.23 -9.08 7.11 99.48 0.71 -8.38 16 13 C 0.21 8.33 4.57 85.63 0.39 8.72 16 14 C 0.20 8.46 7.70 137.66 1.06 9.52 16 15 N -0.29 -14.51 12.18 -49.59 -0.60 -15.11 16 16 N -0.32 -14.47 11.99 -58.09 -0.70 -15.17 16 17 C 0.39 14.81 8.28 260.18 2.16 16.96 16 18 N -0.44 -15.96 3.01 -338.28 -1.02 -16.98 16 19 C 0.15 4.06 6.65 38.66 0.26 4.31 16 20 C -0.16 -3.29 7.34 22.33 0.16 -3.12 16 21 C -0.04 -0.40 10.02 22.32 0.22 -0.18 16 22 C -0.11 -1.00 10.03 22.28 0.22 -0.77 16 23 C -0.02 -0.39 9.65 22.46 0.22 -0.17 16 24 C -0.18 -4.59 5.88 -20.05 -0.12 -4.70 16 25 C 0.56 16.38 7.64 86.64 0.66 17.04 16 26 O -0.52 -15.43 16.10 -4.13 -0.07 -15.50 16 27 N -0.51 -15.94 3.06 -668.45 -2.04 -17.98 16 28 C 0.08 1.92 10.35 127.77 1.32 3.25 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.60 7.79 -2.38 -0.02 1.58 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.50 8.00 -2.39 -0.02 1.48 16 35 H 0.06 1.84 5.09 -2.39 -0.01 1.82 16 36 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.11 3.44 5.19 -2.39 -0.01 3.43 16 38 H 0.07 3.30 3.25 -2.39 -0.01 3.29 16 39 H 0.15 3.31 2.68 -2.91 -0.01 3.31 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 41 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 42 H 0.16 2.08 7.76 -2.91 -0.02 2.06 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.11 2.26 7.41 -2.39 -0.02 2.24 16 45 H 0.09 2.25 7.87 -2.39 -0.02 2.23 16 Total: -1.00 -80.42 360.98 6.31 -74.12 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.00 Total: 11.15 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 9.18 Total: 36.64 kcal Atomic # 7 Polarization: -145.54 SS G_CDS: -5.53 Total: -151.07 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.07 Total: -15.50 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.72 Total: 44.66 kcal Total: -80.42 6.31 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.467 kcal (2) G-P(sol) polarization free energy of solvation -80.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds