Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.53001 * 109.46691 * 119.99517 * 2 1 3 5 5 N 1.46500 * 109.46839 * 65.00392 * 4 2 1 6 6 C 1.35041 * 126.39823 * 269.99684 * 5 4 2 7 7 N 1.30505 * 108.69854 * 179.77108 * 6 5 4 8 8 C 1.34119 * 109.25667 * 0.37668 * 7 6 5 9 9 S 1.76208 * 125.99041 * 179.88785 * 8 7 6 10 10 O 1.42097 * 106.40185 * 156.14952 * 9 8 7 11 11 O 1.42097 * 106.40036 * 23.22822 * 9 8 7 12 12 N 1.65602 * 107.21383 * 269.69173 * 9 8 7 13 13 C 1.46506 * 120.00006 * 90.00215 * 12 9 8 14 14 C 1.50703 * 109.47289 * 94.99495 * 13 12 9 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46716 * 120.00463 * 18 16 14 21 21 H 1.48500 * 109.46999 * 240.00161 * 18 16 14 22 22 C 1.46495 * 120.00241 * 269.99567 * 12 9 8 23 23 C 1.52998 * 109.47247 * 265.00554 * 22 12 9 24 24 C 1.52994 * 117.49922 * 243.74494 * 23 22 12 25 25 C 1.53000 * 117.50071 * 175.08232 * 23 22 12 26 26 C 1.34668 * 108.02288 * 359.62307 * 8 7 6 27 27 H 1.09009 * 109.46991 * 60.00264 * 1 2 3 28 28 H 1.08998 * 109.46777 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47730 * 300.00517 * 1 2 3 30 30 H 1.08998 * 109.47274 * 239.99518 * 2 1 3 31 31 H 1.08999 * 109.47023 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47212 * 299.99981 * 3 2 1 33 33 H 1.09003 * 109.47058 * 59.99725 * 3 2 1 34 34 H 1.08991 * 109.47622 * 305.00501 * 4 2 1 35 35 H 1.08998 * 109.46702 * 185.00054 * 4 2 1 36 36 H 1.07999 * 125.65114 * 359.97438 * 6 5 4 37 37 H 1.09001 * 109.47060 * 214.99945 * 13 12 9 38 38 H 1.09004 * 109.47073 * 334.99434 * 13 12 9 39 39 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46665 * 25.00141 * 22 12 9 41 41 H 1.08998 * 109.47564 * 145.00383 * 22 12 9 42 42 H 1.09004 * 115.55359 * 29.41599 * 23 22 12 43 43 H 1.09004 * 117.49920 * 359.97438 * 24 23 22 44 44 H 1.09005 * 117.50190 * 145.02336 * 24 23 22 45 45 H 1.08998 * 117.50490 * 214.97894 * 25 23 22 46 46 H 1.08998 * 117.49600 * 0.02562 * 25 23 22 47 47 H 1.08003 * 126.59372 * 180.20160 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 0.5116 -2.6712 1.6726 7 7 0.5195 -3.9536 1.4308 8 6 1.6577 -4.2778 0.7998 9 16 2.1242 -5.8922 0.2696 10 8 3.0542 -5.7135 -0.7898 11 8 0.9193 -6.6322 0.1294 12 7 2.9618 -6.5937 1.5140 13 6 2.2485 -7.3705 2.5310 14 6 2.2815 -8.8313 2.1621 15 1 2.7839 -9.1492 1.2605 16 6 1.6711 -9.7618 2.9761 17 7 1.0598 -9.3745 4.0743 18 14 1.7114 -11.5724 2.5185 19 1 2.4556 -11.7447 1.2451 20 1 2.3882 -12.3400 3.5946 21 1 0.3228 -12.0720 2.3523 22 6 4.4160 -6.4378 1.5979 23 6 5.0966 -7.6424 0.9448 24 6 5.9490 -8.5436 1.8403 25 6 6.6218 -7.6141 0.8272 26 6 2.3790 -3.1522 0.6371 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6442 1.2953 36 1 -0.2781 -2.1297 2.1721 37 1 2.7289 -7.2293 3.4992 38 1 1.2135 -7.0330 2.5863 39 1 0.6301 -10.0291 4.6467 40 1 4.7142 -5.5266 1.0792 41 1 4.7149 -6.3747 2.6442 42 1 4.5384 -8.1176 0.1381 43 1 6.0252 -8.2781 2.8948 44 1 5.9519 -9.6117 1.6227 45 1 7.0671 -8.0710 -0.0566 46 1 7.1404 -6.7375 1.2155 47 1 3.3452 -3.0698 0.1617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080647639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = 7.803105 kcal Electronic energy + Delta-G solvation = -28566.292897 eV Core-core repulsion = 24685.162872 eV Total energy + Delta-G solvation = -3881.130025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20088 -37.39690 -37.06153 -36.39699 -34.98592 -34.57700 -32.86225 -32.22989 -29.80546 -27.72684 -27.68947 -26.87582 -25.27889 -22.39093 -22.09730 -21.83103 -21.58008 -20.67341 -20.20895 -18.50687 -17.53124 -16.66774 -16.38481 -15.87089 -15.56805 -15.50379 -15.46089 -14.75879 -14.40790 -14.16200 -14.03827 -13.93737 -13.82460 -13.38039 -13.04763 -12.83915 -12.55304 -12.49941 -12.33618 -11.85238 -11.60891 -11.54767 -11.43019 -11.34409 -11.31116 -11.08029 -10.99218 -10.95199 -10.90365 -10.61456 -10.44828 -9.98924 -9.91713 -9.82122 -9.76654 -9.53671 -9.26851 -8.87428 -8.28628 -7.97632 -5.90411 -3.91835 1.14405 1.70331 2.53923 2.80755 3.40496 3.48332 3.53098 3.89690 4.09708 4.19594 4.38737 4.40114 4.50923 4.56568 4.59543 4.68996 4.72596 4.89269 5.04120 5.07565 5.13139 5.24669 5.31181 5.37391 5.37759 5.46104 5.48968 5.56157 5.63399 5.72046 5.77627 5.84643 5.93464 6.00620 6.03022 6.24726 6.28526 6.44348 6.60647 6.64691 6.86697 6.99474 7.38912 7.57297 7.75108 7.88585 8.07289 8.37547 9.09720 9.71309 11.18846 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003425 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.891622 B = 8174.224124 C = 9204.430809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.103 3.897 5 N -0.454 5.454 6 C 0.178 3.822 7 N -0.405 5.405 8 C -0.549 4.549 9 S 2.712 3.288 10 O -0.975 6.975 11 O -0.930 6.930 12 N -0.977 5.977 13 C 0.257 3.743 14 C -0.513 4.513 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.167 3.833 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.192 4.192 26 C 0.055 3.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.209 0.791 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.260 0.740 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.227 21.798 -4.562 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.019 4.019 5 N -0.135 5.135 6 C -0.107 4.107 7 N -0.121 5.121 8 C -0.758 4.758 9 S 2.796 3.204 10 O -0.965 6.965 11 O -0.919 6.919 12 N -0.817 5.817 13 C 0.136 3.864 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C 0.040 3.960 23 C -0.165 4.165 24 C -0.200 4.200 25 C -0.230 4.230 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.226 0.774 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.287 20.999 -4.940 22.210 hybrid contribution 0.494 0.207 0.215 0.577 sum 5.781 21.205 -4.725 22.481 Atomic orbital electron populations 1.21940 0.94223 1.02719 1.02382 1.21539 0.97269 0.96842 0.97760 1.21776 1.01241 0.94621 1.02610 1.22142 1.02047 0.77658 1.00090 1.45866 1.16825 1.08252 1.42590 1.25330 0.90948 0.90845 1.03599 1.70414 1.18122 1.11291 1.12288 1.34112 1.01077 1.22376 1.18265 1.01639 0.73467 0.72226 0.73052 1.93520 1.63826 1.87107 1.52037 1.93591 1.46006 1.67805 1.84522 1.57474 1.13909 1.63680 1.46596 1.19131 0.91769 0.90054 0.85459 1.21493 1.34120 0.91400 1.08245 0.91927 1.24893 0.95248 0.98893 0.95025 1.69942 1.36306 1.34058 1.13413 0.86531 0.77808 0.85303 0.78340 1.19687 1.21223 1.20987 1.20599 0.79720 0.95309 1.00355 1.22661 0.91491 1.00068 1.02293 1.22876 1.03672 0.97091 0.96399 1.22969 0.95747 1.02426 1.01881 1.22655 0.98963 0.86669 1.00214 0.92020 0.91984 0.92232 0.90186 0.92214 0.91807 0.92189 0.88377 0.88634 0.77411 0.94928 0.93724 0.92994 0.91554 0.90777 0.87640 0.88935 0.89276 0.89436 0.89408 0.79440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.89 37.16 0.33 -0.69 16 2 C -0.11 -0.69 3.13 -90.62 -0.28 -0.97 16 3 C -0.14 -0.60 9.19 37.16 0.34 -0.26 16 4 C 0.10 0.66 5.58 -4.04 -0.02 0.63 16 5 N -0.45 -5.02 2.57 -118.58 -0.31 -5.32 16 6 C 0.18 2.35 10.86 -90.37 -0.98 1.37 16 7 N -0.41 -7.56 11.25 -13.86 -0.16 -7.72 16 8 C -0.55 -9.99 7.13 -17.82 -0.13 -10.11 16 9 S 2.71 57.94 5.75 -107.50 -0.62 57.32 16 10 O -0.98 -20.22 16.81 -57.17 -0.96 -21.18 16 11 O -0.93 -24.22 16.99 -57.17 -0.97 -25.19 16 12 N -0.98 -20.97 2.80 -115.66 -0.32 -21.29 16 13 C 0.26 6.66 5.12 -5.19 -0.03 6.64 16 14 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 15 H 0.06 1.76 7.15 -52.49 -0.38 1.39 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.17 2.95 5.65 -4.05 -0.02 2.93 16 23 C -0.15 -2.61 5.15 -90.62 -0.47 -3.08 16 24 C -0.16 -2.70 10.18 -26.70 -0.27 -2.97 16 25 C -0.19 -2.75 10.26 -26.69 -0.27 -3.02 16 26 C 0.05 0.75 11.31 -16.56 -0.19 0.56 16 27 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.21 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 38 H 0.04 1.27 7.61 -51.93 -0.40 0.88 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.98 7.61 -51.93 -0.40 0.58 16 41 H 0.07 1.23 7.74 -51.93 -0.40 0.82 16 42 H 0.11 2.13 7.91 -51.93 -0.41 1.72 16 43 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 401.72 15.07 6.05 6.05 Total: -1.00 -37.01 401.72 -11.74 -48.75 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.78 Total: -0.49 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.40 Total: -22.13 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.05 Total: -60.49 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.93 Total: -46.37 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 57.94 SS G_CDS: -0.62 Total: 57.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.01 -11.74 -48.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080647639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.558 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds