Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 N 1.46497 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00171 * 90.00147 * 4 3 2 6 6 H 1.08003 * 120.00082 * 34.98591 * 5 4 3 7 7 C 1.38805 * 120.00212 * 214.99253 * 5 4 3 8 8 N 1.31630 * 119.99986 * 21.99977 * 7 5 4 9 9 Si 1.86806 * 120.00409 * 202.00207 * 7 5 4 10 10 H 1.48502 * 109.46927 * 270.00108 * 9 7 5 11 11 H 1.48503 * 109.46715 * 29.99713 * 9 7 5 12 12 H 1.48498 * 109.47275 * 149.99879 * 9 7 5 13 13 C 1.46496 * 120.00191 * 269.99438 * 4 3 2 14 14 C 1.50700 * 109.47382 * 273.87391 * 13 4 3 15 15 C 1.39865 * 126.04081 * 90.01865 * 14 13 4 16 16 N 1.30842 * 108.20394 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20296 * 359.97438 * 16 15 14 18 18 C 1.46498 * 126.03471 * 179.97438 * 17 16 15 19 19 C 1.53000 * 108.90056 * 226.34366 * 18 17 16 20 20 C 1.52976 * 108.92870 * 107.79450 * 18 17 16 21 21 C 1.55097 * 108.66384 * 209.33543 * 20 18 17 22 22 S 1.83841 * 101.19302 * 41.87290 * 21 20 18 23 23 O 1.42102 * 109.61551 * 211.05573 * 22 21 20 24 24 O 1.42098 * 109.78221 * 77.13769 * 22 21 20 25 25 C 1.53625 * 108.93441 * 345.03250 * 18 17 16 26 26 C 1.34947 * 107.92624 * 359.75908 * 17 16 15 27 27 H 1.09006 * 109.46757 * 60.00127 * 1 2 3 28 28 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47211 * 300.00541 * 1 2 3 30 30 H 1.08996 * 109.47211 * 239.99459 * 2 1 3 31 31 H 1.09006 * 109.46757 * 119.99873 * 2 1 3 32 32 H 1.08996 * 109.47424 * 59.99590 * 3 2 1 33 33 H 1.09002 * 109.46654 * 299.99533 * 3 2 1 34 34 H 0.96997 * 120.00024 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47027 * 33.87054 * 13 4 3 36 36 H 1.09004 * 109.47479 * 153.87084 * 13 4 3 37 37 H 1.07998 * 125.90363 * 0.02562 * 15 14 13 38 38 H 1.09002 * 109.46858 * 60.70470 * 19 18 17 39 39 H 1.09003 * 109.47507 * 180.70244 * 19 18 17 40 40 H 1.08997 * 109.47302 * 300.70523 * 19 18 17 41 41 H 1.08998 * 109.64983 * 329.17464 * 20 18 17 42 42 H 1.08997 * 109.65291 * 89.49587 * 20 18 17 43 43 H 1.09006 * 111.07648 * 283.89150 * 21 20 18 44 44 H 1.08999 * 111.07689 * 159.85105 * 21 20 18 45 45 H 1.08999 * 110.26295 * 242.06782 * 25 18 17 46 46 H 1.08998 * 110.26440 * 4.03777 * 25 18 17 47 47 H 1.08000 * 126.12860 * 180.23602 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1903 1.4422 -1.1850 6 1 3.7971 1.9784 -2.0361 7 6 5.3901 0.7527 -1.2931 8 7 5.6638 -0.2270 -0.4577 9 14 6.6166 1.2151 -2.6241 10 1 6.3382 0.4245 -3.8500 11 1 6.4926 2.6630 -2.9300 12 1 7.9939 0.9254 -2.1504 13 6 4.2370 1.4426 1.2696 14 6 4.4050 2.8603 1.7524 15 6 3.5196 3.5581 2.5802 16 7 4.0050 4.7566 2.7797 17 7 5.2169 4.8592 2.0846 18 6 6.0879 6.0363 2.0401 19 6 6.5059 6.2890 0.5902 20 6 7.3402 5.7588 2.8736 21 6 7.8631 7.1021 3.4462 22 16 6.2912 7.9104 3.9517 23 8 6.4180 9.3202 3.8264 24 8 5.8280 7.3424 5.1691 25 6 5.3056 7.2550 2.5529 26 6 5.4427 3.6807 1.4672 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.5024 -0.7086 -0.5329 35 1 3.6794 0.8701 2.0108 36 1 5.2178 0.9899 1.1235 37 1 2.5952 3.1738 2.9854 38 1 5.6196 6.4762 -0.0161 39 1 7.1649 7.1562 0.5478 40 1 7.0310 5.4145 0.2058 41 1 7.0934 5.0827 3.6921 42 1 8.1063 5.3056 2.2445 43 1 8.3736 7.6833 2.6783 44 1 8.5123 6.9355 4.3058 45 1 5.2189 8.0057 1.7674 46 1 4.3163 6.9517 2.8955 47 1 6.2969 3.4370 0.8530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = 35.546855 kcal Electronic energy + Delta-G solvation = -28769.271388 eV Core-core repulsion = 24889.344422 eV Total energy + Delta-G solvation = -3879.926966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.94964 -37.81899 -37.23672 -36.25021 -35.98479 -32.90190 -31.87156 -30.98900 -30.12282 -29.37736 -28.00455 -25.54861 -25.51283 -24.65351 -22.20660 -21.72933 -20.18641 -19.47644 -19.29596 -19.03886 -17.47463 -16.71635 -16.70017 -16.17096 -15.81640 -14.84432 -14.74623 -14.51511 -14.41474 -14.21282 -13.86425 -13.57684 -13.34712 -13.19768 -13.03228 -12.85596 -12.55003 -12.46456 -12.38445 -12.27969 -12.20322 -12.11618 -11.95002 -11.49043 -11.40740 -11.17953 -11.00520 -10.99448 -10.77826 -10.67830 -10.54942 -10.41914 -10.22833 -9.94753 -9.67359 -9.62190 -8.90817 -8.50794 -7.72057 -6.59602 -5.81893 -3.32440 -0.26632 2.12834 2.40198 2.65072 3.25359 3.27543 3.37197 3.38440 3.50470 3.72474 3.87584 4.08981 4.19468 4.44470 4.45760 4.50022 5.00574 5.09672 5.20196 5.24771 5.28771 5.33597 5.38889 5.47051 5.57025 5.62056 5.76207 5.79294 5.87296 5.88303 6.19025 6.23201 6.34796 6.37685 6.56079 6.58953 6.70359 6.77470 7.08720 7.10385 7.25807 7.33697 7.55063 7.69628 7.80048 8.22738 8.50632 9.18537 9.82407 10.40880 11.19660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003455 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.530976 B = 8101.351720 C = 9451.871025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.151 3.849 4 N -0.578 5.578 5 C -0.247 4.247 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.289 1.289 13 C 0.210 3.790 14 C -0.212 4.212 15 C 0.053 3.947 16 N -0.316 5.316 17 N -0.383 5.383 18 C 0.211 3.789 19 C -0.165 4.165 20 C -0.137 4.137 21 C -0.576 4.576 22 S 2.384 3.616 23 O -0.939 6.939 24 O -0.921 6.921 25 C -0.592 4.592 26 C 0.060 3.940 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.254 0.746 35 H 0.031 0.969 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.166 0.834 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 11.982 5.685 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.297 5.297 5 C -0.377 4.377 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.213 1.213 11 H -0.206 1.206 12 H -0.215 1.215 13 C 0.082 3.918 14 C -0.225 4.225 15 C -0.134 4.134 16 N -0.136 5.136 17 N -0.168 5.168 18 C 0.125 3.875 19 C -0.223 4.223 20 C -0.177 4.177 21 C -0.706 4.706 22 S 2.567 3.433 23 O -0.936 6.936 24 O -0.918 6.918 25 C -0.721 4.721 26 C -0.083 4.083 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.121 0.879 37 H 0.190 0.810 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.184 0.816 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.923 13.692 7.015 15.660 hybrid contribution 0.989 -1.212 -1.964 2.511 sum 3.912 12.479 5.051 14.020 Atomic orbital electron populations 1.21760 0.97935 1.00226 1.00622 1.22086 0.92885 1.00978 1.02024 1.20878 0.85421 0.93193 0.98022 1.43837 0.99259 1.84561 1.02028 1.19019 1.03497 1.24565 0.90598 0.92533 1.25029 1.00771 0.95363 0.97845 1.69993 1.24137 1.19686 1.39163 0.86549 0.81163 0.78460 0.82164 1.21296 1.20588 1.21531 1.19345 1.00428 0.86480 0.85526 1.21587 0.94940 1.02378 1.03572 1.23746 0.99770 0.91317 0.98537 1.76960 0.96443 1.20884 1.19344 1.48500 1.17536 1.10186 1.40571 1.20330 0.86995 0.82257 0.97947 1.22456 1.03181 1.03593 0.93083 1.22620 0.96770 0.96432 1.01859 1.30557 1.19708 1.08415 1.11906 1.09314 0.80126 0.75985 0.77912 1.93612 1.85286 1.27364 1.87294 1.93661 1.78532 1.79712 1.39928 1.30738 1.15378 1.06587 1.19422 1.22187 1.01519 0.85463 0.99155 0.93551 0.93964 0.93671 0.92022 0.93011 0.94923 0.94446 0.93629 0.95069 0.87944 0.80959 0.90566 0.90154 0.90384 0.88237 0.87276 0.84123 0.84041 0.83619 0.81608 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.15 3.08 5.69 -4.04 -0.02 3.06 16 4 N -0.58 -13.45 2.43 -174.61 -0.42 -13.87 16 5 C -0.25 -6.32 9.48 -15.06 -0.14 -6.46 16 6 H 0.06 1.49 7.92 -52.48 -0.42 1.07 16 7 C 0.01 0.24 4.93 -17.43 -0.09 0.16 16 8 N -0.89 -23.78 11.38 55.49 0.63 -23.14 16 9 Si 0.89 20.08 29.61 -169.99 -5.03 15.05 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.21 4.59 5.73 -5.20 -0.03 4.56 16 14 C -0.21 -4.07 5.68 -105.05 -0.60 -4.67 16 15 C 0.05 0.93 11.96 -17.36 -0.21 0.72 16 16 N -0.32 -5.41 10.80 30.62 0.33 -5.08 16 17 N -0.38 -5.88 3.34 -48.36 -0.16 -6.04 16 18 C 0.21 2.34 1.08 -131.51 -0.14 2.20 16 19 C -0.16 -1.60 7.76 37.16 0.29 -1.31 16 20 C -0.14 -1.23 5.36 -25.63 -0.14 -1.37 16 21 C -0.58 -3.79 7.46 38.27 0.29 -3.50 16 22 S 2.38 23.51 6.05 -107.50 -0.65 22.86 16 23 O -0.94 -11.54 18.16 -57.69 -1.05 -12.58 16 24 O -0.92 -12.88 18.16 -57.69 -1.05 -13.92 16 25 C -0.59 -5.97 6.62 37.48 0.25 -5.72 16 26 C 0.06 1.06 10.43 -17.22 -0.18 0.88 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 34 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.10 2.53 5.39 -51.93 -0.28 2.25 16 37 H 0.17 2.65 8.06 -52.49 -0.42 2.22 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.79 7.27 -51.93 -0.38 0.41 16 41 H 0.10 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.11 0.82 7.76 -51.93 -0.40 0.42 16 43 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.15 1.09 7.63 -51.93 -0.40 0.69 16 46 H 0.17 2.01 6.44 -51.93 -0.33 1.67 16 47 H 0.16 2.78 7.56 -52.49 -0.40 2.38 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -33.68 391.45 -9.67 -43.34 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.64 Total: 3.68 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.52 Total: -16.19 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.38 Total: -48.14 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -2.10 Total: -26.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -0.65 Total: 22.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.68 -9.67 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.891 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds