Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 N 1.46497 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00171 * 90.00147 * 4 3 2 6 6 H 1.08003 * 120.00082 * 34.98591 * 5 4 3 7 7 C 1.38805 * 120.00212 * 214.99253 * 5 4 3 8 8 N 1.31630 * 119.99986 * 21.99977 * 7 5 4 9 9 Si 1.86806 * 120.00409 * 202.00207 * 7 5 4 10 10 H 1.48502 * 109.46927 * 270.00108 * 9 7 5 11 11 H 1.48503 * 109.46715 * 29.99713 * 9 7 5 12 12 H 1.48498 * 109.47275 * 149.99879 * 9 7 5 13 13 C 1.46496 * 120.00191 * 269.99438 * 4 3 2 14 14 C 1.50700 * 109.47382 * 273.87391 * 13 4 3 15 15 C 1.39865 * 126.04081 * 90.01865 * 14 13 4 16 16 N 1.30842 * 108.20394 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20296 * 359.97438 * 16 15 14 18 18 C 1.46498 * 126.03471 * 179.97438 * 17 16 15 19 19 C 1.53000 * 108.90056 * 226.34366 * 18 17 16 20 20 C 1.52976 * 108.92870 * 107.79450 * 18 17 16 21 21 C 1.55097 * 108.66384 * 209.33543 * 20 18 17 22 22 S 1.83841 * 101.19302 * 41.87290 * 21 20 18 23 23 O 1.42102 * 109.61551 * 211.05573 * 22 21 20 24 24 O 1.42098 * 109.78221 * 77.13769 * 22 21 20 25 25 C 1.53625 * 108.93441 * 345.03250 * 18 17 16 26 26 C 1.34947 * 107.92624 * 359.75908 * 17 16 15 27 27 H 1.09006 * 109.46757 * 60.00127 * 1 2 3 28 28 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47211 * 300.00541 * 1 2 3 30 30 H 1.08996 * 109.47211 * 239.99459 * 2 1 3 31 31 H 1.09006 * 109.46757 * 119.99873 * 2 1 3 32 32 H 1.08996 * 109.47424 * 59.99590 * 3 2 1 33 33 H 1.09002 * 109.46654 * 299.99533 * 3 2 1 34 34 H 0.96997 * 120.00024 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47027 * 33.87054 * 13 4 3 36 36 H 1.09004 * 109.47479 * 153.87084 * 13 4 3 37 37 H 1.07998 * 125.90363 * 0.02562 * 15 14 13 38 38 H 1.09002 * 109.46858 * 60.70470 * 19 18 17 39 39 H 1.09003 * 109.47507 * 180.70244 * 19 18 17 40 40 H 1.08997 * 109.47302 * 300.70523 * 19 18 17 41 41 H 1.08998 * 109.64983 * 329.17464 * 20 18 17 42 42 H 1.08997 * 109.65291 * 89.49587 * 20 18 17 43 43 H 1.09006 * 111.07648 * 283.89150 * 21 20 18 44 44 H 1.08999 * 111.07689 * 159.85105 * 21 20 18 45 45 H 1.08999 * 110.26295 * 242.06782 * 25 18 17 46 46 H 1.08998 * 110.26440 * 4.03777 * 25 18 17 47 47 H 1.08000 * 126.12860 * 180.23602 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1903 1.4422 -1.1850 6 1 3.7971 1.9784 -2.0361 7 6 5.3901 0.7527 -1.2931 8 7 5.6638 -0.2270 -0.4577 9 14 6.6166 1.2151 -2.6241 10 1 6.3382 0.4245 -3.8500 11 1 6.4926 2.6630 -2.9300 12 1 7.9939 0.9254 -2.1504 13 6 4.2370 1.4426 1.2696 14 6 4.4050 2.8603 1.7524 15 6 3.5196 3.5581 2.5802 16 7 4.0050 4.7566 2.7797 17 7 5.2169 4.8592 2.0846 18 6 6.0879 6.0363 2.0401 19 6 6.5059 6.2890 0.5902 20 6 7.3402 5.7588 2.8736 21 6 7.8631 7.1021 3.4462 22 16 6.2912 7.9104 3.9517 23 8 6.4180 9.3202 3.8264 24 8 5.8280 7.3424 5.1691 25 6 5.3056 7.2550 2.5529 26 6 5.4427 3.6807 1.4672 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.5024 -0.7086 -0.5329 35 1 3.6794 0.8701 2.0108 36 1 5.2178 0.9899 1.1235 37 1 2.5952 3.1738 2.9854 38 1 5.6196 6.4762 -0.0161 39 1 7.1649 7.1562 0.5478 40 1 7.0310 5.4145 0.2058 41 1 7.0934 5.0827 3.6921 42 1 8.1063 5.3056 2.2445 43 1 8.3736 7.6833 2.6783 44 1 8.5123 6.9355 4.3058 45 1 5.2189 8.0057 1.7674 46 1 4.3163 6.9517 2.8955 47 1 6.2969 3.4370 0.8530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = 13.451646 kcal Electronic energy + Delta-G solvation = -28770.229508 eV Core-core repulsion = 24889.344422 eV Total energy + Delta-G solvation = -3880.885086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21882 -38.79896 -38.14709 -37.65564 -37.13233 -34.55845 -33.07761 -32.44428 -31.32910 -30.71424 -28.85016 -27.27129 -26.94927 -25.54797 -23.70703 -23.02575 -21.73096 -20.84715 -20.45596 -19.90990 -18.75983 -18.14970 -17.49034 -17.15307 -16.76140 -16.66471 -15.99615 -15.80909 -15.51735 -15.49790 -15.32085 -14.80032 -14.61822 -14.35976 -14.09480 -13.87913 -13.72218 -13.56206 -13.44263 -13.28404 -13.23336 -13.17733 -13.00271 -12.84930 -12.76128 -12.65323 -12.45877 -12.25276 -12.19044 -12.10578 -11.84978 -11.81388 -11.69353 -11.29573 -11.28187 -11.22398 -10.44523 -10.19093 -9.13641 -8.48242 -7.74952 -5.29587 -1.02818 1.04174 1.38006 1.47003 1.51838 1.59716 1.59956 2.04740 2.47639 2.58578 2.94906 3.07788 3.29989 3.33240 3.48433 3.63236 3.92044 3.96277 4.07586 4.11914 4.32290 4.32792 4.47868 4.48980 4.53795 4.63533 4.66216 4.72599 4.74579 4.82618 4.88013 4.88249 4.99758 5.04512 5.10730 5.15191 5.23787 5.30460 5.51077 5.56077 5.65636 5.74445 5.85312 5.96142 6.25112 6.56042 6.87426 7.26618 7.97464 8.50891 9.23438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003455 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.530976 B = 8101.351720 C = 9451.871025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.150 3.850 4 N -0.592 5.592 5 C -0.255 4.255 6 H 0.046 0.954 7 C -0.029 4.029 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.293 1.293 11 H -0.271 1.271 12 H -0.286 1.286 13 C 0.221 3.779 14 C -0.238 4.238 15 C 0.045 3.955 16 N -0.324 5.324 17 N -0.371 5.371 18 C 0.196 3.804 19 C -0.167 4.167 20 C -0.141 4.141 21 C -0.540 4.540 22 S 2.389 3.611 23 O -0.965 6.965 24 O -0.972 6.972 25 C -0.593 4.593 26 C 0.065 3.935 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.251 0.749 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.188 0.812 38 H 0.060 0.940 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.181 0.819 44 H 0.166 0.834 45 H 0.172 0.828 46 H 0.144 0.856 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 13.761 5.175 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.024 3.976 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.063 0.937 7 C -0.226 4.226 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.220 1.220 11 H -0.196 1.196 12 H -0.212 1.212 13 C 0.094 3.906 14 C -0.251 4.251 15 C -0.140 4.140 16 N -0.145 5.145 17 N -0.155 5.155 18 C 0.112 3.888 19 C -0.225 4.225 20 C -0.180 4.180 21 C -0.673 4.673 22 S 2.576 3.424 23 O -0.962 6.962 24 O -0.969 6.969 25 C -0.722 4.722 26 C -0.081 4.081 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.205 0.795 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.199 0.801 44 H 0.184 0.816 45 H 0.190 0.810 46 H 0.162 0.838 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.305 15.527 6.536 17.387 hybrid contribution 0.574 -1.737 -1.814 2.577 sum 4.878 13.789 4.721 15.370 Atomic orbital electron populations 1.21665 0.94467 1.01558 1.01855 1.21926 0.95876 0.99500 0.99725 1.20955 0.84145 0.93981 0.98491 1.44035 1.00383 1.84878 1.01844 1.19125 1.04129 1.24183 0.91177 0.93657 1.25581 1.01994 0.95256 0.99776 1.70122 1.24273 1.20661 1.40808 0.85646 0.79152 0.78356 0.79486 1.22013 1.19613 1.21210 1.19043 0.98582 0.88074 0.84933 1.21299 0.96737 1.01504 1.05554 1.23925 1.00317 0.91288 0.98504 1.76955 0.97328 1.20588 1.19664 1.48823 1.17119 1.10722 1.38877 1.20902 0.87214 0.80851 0.99868 1.22553 1.03350 1.05347 0.91221 1.22661 0.96293 0.97583 1.01493 1.30450 1.16827 1.06205 1.13780 1.09000 0.81299 0.75265 0.76885 1.93573 1.86020 1.29207 1.87416 1.93597 1.80373 1.80243 1.42671 1.30732 1.14244 1.06866 1.20335 1.22197 1.01095 0.86073 0.98749 0.92768 0.92621 0.91946 0.95214 0.94345 0.93269 0.94931 0.93996 0.95580 0.90749 0.79510 0.92082 0.85762 0.90774 0.89946 0.84878 0.80107 0.81594 0.81007 0.83836 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.13 -5.06 6.26 30.60 0.19 -4.87 16 3 C 0.15 6.18 5.69 86.38 0.49 6.67 16 4 N -0.59 -28.19 2.43 -706.35 -1.72 -29.90 16 5 C -0.26 -13.34 9.48 84.03 0.80 -12.55 16 6 H 0.05 2.43 7.92 -2.91 -0.02 2.41 16 7 C -0.03 -1.50 4.93 84.86 0.42 -1.08 16 8 N -0.91 -50.19 11.38 21.65 0.25 -49.95 16 9 Si 0.95 41.41 29.61 68.60 2.03 43.44 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 13 C 0.22 9.97 5.73 85.63 0.49 10.46 16 14 C -0.24 -9.27 5.68 -20.14 -0.11 -9.39 16 15 C 0.05 1.60 11.96 85.23 1.02 2.62 16 16 N -0.32 -11.06 10.80 -57.03 -0.62 -11.67 16 17 N -0.37 -11.06 3.34 -306.92 -1.03 -12.09 16 18 C 0.20 3.90 1.08 3.81 0.00 3.90 16 19 C -0.17 -2.67 7.76 71.98 0.56 -2.11 16 20 C -0.14 -2.06 5.36 31.30 0.17 -1.90 16 21 C -0.54 -4.68 7.46 72.70 0.54 -4.14 16 22 S 2.39 43.09 6.05 -56.49 -0.34 42.75 16 23 O -0.97 -22.08 18.16 -127.50 -2.32 -24.40 16 24 O -0.97 -27.10 18.16 -127.50 -2.32 -29.41 16 25 C -0.59 -10.96 6.62 72.19 0.48 -10.48 16 26 C 0.06 2.24 10.43 83.54 0.87 3.12 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 33 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 34 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 35 H 0.03 1.15 8.10 -2.38 -0.02 1.14 16 36 H 0.07 3.81 5.39 -2.38 -0.01 3.80 16 37 H 0.19 5.74 8.06 -2.91 -0.02 5.72 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.27 7.27 -2.39 -0.02 1.26 16 41 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 42 H 0.13 1.41 7.76 -2.39 -0.02 1.39 16 43 H 0.18 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.17 2.14 7.63 -2.39 -0.02 2.12 16 46 H 0.14 3.44 6.44 -2.39 -0.02 3.43 16 47 H 0.17 5.63 7.56 -2.91 -0.02 5.61 16 Total: -1.00 -75.86 391.45 1.52 -74.33 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.95 Total: 19.96 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 6.63 Total: -23.06 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.11 Total: -103.61 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -4.63 Total: -53.81 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 43.09 SS G_CDS: -0.34 Total: 42.75 kcal Total: -75.86 1.52 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.783 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds