Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 C 1.50705 * 109.47020 * 119.99854 * 2 1 3 5 5 N 1.30762 * 125.61584 * 300.02356 * 4 2 1 6 6 C 1.33476 * 109.10079 * 180.02562 * 5 4 2 7 7 C 1.35168 * 108.21852 * 359.78677 * 6 5 4 8 8 N 1.35642 * 125.64277 * 119.87702 * 4 2 1 9 9 C 1.46501 * 126.50238 * 0.24347 * 8 4 2 10 10 C 1.50615 * 124.88543 * 180.16303 * 7 6 5 11 11 C 1.53411 * 108.80063 * 342.41171 * 10 7 6 12 12 N 1.47067 * 109.09441 * 45.06336 * 11 10 7 13 13 S 1.65590 * 120.81176 * 115.69708 * 12 11 10 14 14 O 1.42101 * 104.27979 * 26.05134 * 13 12 11 15 15 O 1.42099 * 104.27860 * 153.91050 * 13 12 11 16 16 C 1.81399 * 104.45238 * 269.98268 * 13 12 11 17 17 C 1.52998 * 109.47542 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47386 * 179.97438 * 17 16 13 19 19 H 1.07998 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46784 * 60.00105 * 22 20 18 24 24 H 1.48498 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47250 * 299.99702 * 22 20 18 26 26 C 1.47404 * 118.37650 * 295.68074 * 12 11 10 27 27 H 1.08999 * 109.46618 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.46898 * 60.00147 * 1 2 3 29 29 H 1.08994 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47027 * 239.99940 * 2 1 3 31 31 H 1.09002 * 109.47507 * 59.99631 * 3 2 1 32 32 H 1.09001 * 109.47723 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47106 * 299.99726 * 3 2 1 34 34 H 1.09004 * 109.46464 * 269.81387 * 9 8 4 35 35 H 1.08996 * 109.47126 * 29.80954 * 9 8 4 36 36 H 1.08994 * 109.47464 * 149.81474 * 9 8 4 37 37 H 1.08996 * 109.58306 * 222.61745 * 10 7 6 38 38 H 1.09003 * 109.69516 * 102.27315 * 10 7 6 39 39 H 1.09002 * 109.53501 * 285.18010 * 11 10 7 40 40 H 1.09004 * 109.53722 * 164.94465 * 11 10 7 41 41 H 1.09007 * 109.47090 * 300.00277 * 16 13 12 42 42 H 1.09000 * 109.47099 * 59.99719 * 16 13 12 43 43 H 1.08999 * 109.46912 * 300.00140 * 17 16 13 44 44 H 1.09000 * 109.47143 * 59.99759 * 17 16 13 45 45 H 0.96991 * 120.00110 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.89507 * 163.74602 * 26 12 11 47 47 H 1.08997 * 109.89270 * 284.78773 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7847 -0.3609 2.4660 6 6 2.3907 -1.2167 3.2918 7 6 3.0379 -2.1386 2.5446 8 7 2.8135 -1.8193 1.2395 9 6 3.3228 -2.5360 0.0677 10 6 3.8433 -3.2847 3.0980 11 6 4.1749 -2.9922 4.5670 12 7 2.9665 -2.4972 5.2436 13 16 2.2680 -3.3609 6.4716 14 8 3.3373 -4.1210 7.0178 15 8 1.5934 -2.3815 7.2493 16 6 1.0754 -4.4460 5.6405 17 6 0.3566 -5.3062 6.6818 18 6 -0.6347 -6.2072 5.9914 19 1 -0.7416 -6.1697 4.9173 20 6 -1.4058 -7.0786 6.7310 21 7 -1.2760 -7.1239 8.0389 22 14 -2.6351 -8.1949 5.8752 23 1 -1.9204 -9.0743 4.9154 24 1 -3.3326 -9.0299 6.8858 25 1 -3.6288 -7.3685 5.1440 26 6 2.3926 -1.2133 4.8021 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 2.6105 -3.3078 -0.2239 35 1 3.4573 -1.8356 -0.7565 36 1 4.2794 -2.9980 0.3117 37 1 4.7669 -3.3904 2.5291 38 1 3.2651 -4.2063 3.0305 39 1 4.9580 -2.2359 4.6202 40 1 4.5159 -3.9064 5.0528 41 1 0.3459 -3.8400 5.1031 42 1 1.6006 -5.0915 4.9366 43 1 1.0863 -5.9122 7.2188 44 1 -0.1686 -4.6610 7.3861 45 1 -1.8182 -7.7372 8.5592 46 1 1.3727 -1.1154 5.1741 47 1 3.0024 -0.3883 5.1704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113299261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -24.635527 kcal Electronic energy + Delta-G solvation = -28566.362520 eV Core-core repulsion = 24683.825850 eV Total energy + Delta-G solvation = -3882.536670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -42.45513 -37.43988 -36.65018 -35.47125 -35.32341 -34.44199 -33.86862 -31.38941 -31.12599 -29.27375 -27.44883 -27.40219 -25.60264 -24.92094 -23.47852 -22.19380 -21.55675 -19.85082 -19.41014 -18.26618 -17.55794 -16.86225 -16.55377 -16.17763 -15.89733 -15.47634 -14.92923 -14.68558 -14.60108 -14.54620 -14.23608 -13.73359 -13.65334 -13.48208 -13.34209 -13.08355 -12.87063 -12.55350 -12.45382 -12.35858 -12.25012 -11.86240 -11.73968 -11.69201 -11.57449 -11.42178 -11.30536 -11.22921 -11.06884 -11.05433 -10.94479 -10.42989 -10.35417 -10.00752 -9.76378 -9.64764 -9.34806 -8.82077 -8.48704 -8.09408 -6.10904 -4.16351 0.76014 1.85022 2.52058 2.93641 3.02167 3.27453 3.32254 3.34127 4.05449 4.29402 4.30292 4.37011 4.40882 4.57729 4.61055 4.68907 4.74020 4.83517 4.87234 4.94735 5.01552 5.19106 5.20245 5.24045 5.33961 5.39497 5.43433 5.55838 5.57864 5.61378 5.62755 5.65877 5.72109 5.79687 5.86387 5.98500 6.04685 6.21727 6.24365 6.52302 6.57688 6.65678 7.06188 7.31971 7.38470 7.81924 8.03337 8.19599 8.86634 9.48066 11.00132 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.003406 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.365158 B = 8218.515607 C = 9502.918867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 C -0.139 4.139 4 C 0.202 3.798 5 N -0.466 5.466 6 C -0.009 4.009 7 C -0.015 4.015 8 N -0.452 5.452 9 C 0.070 3.930 10 C -0.062 4.062 11 C 0.127 3.873 12 N -1.006 6.006 13 S 2.593 3.407 14 O -0.962 6.962 15 O -0.959 6.959 16 C -0.588 4.588 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.215 3.785 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.266 0.734 46 H 0.102 0.898 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 12.774 -19.553 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 C -0.197 4.197 4 C -0.059 4.059 5 N -0.184 5.184 6 C -0.140 4.140 7 C -0.130 4.130 8 N -0.134 5.134 9 C -0.072 4.072 10 C -0.102 4.102 11 C 0.001 3.999 12 N -0.842 5.842 13 S 2.692 3.308 14 O -0.953 6.953 15 O -0.950 6.950 16 C -0.721 4.721 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 C 0.089 3.911 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.376 13.401 -18.321 25.390 hybrid contribution -0.491 -1.679 -1.520 2.317 sum 10.885 11.722 -19.841 25.486 Atomic orbital electron populations 1.21790 0.92924 1.02357 1.02821 1.19507 0.96762 0.95574 0.90546 1.21780 1.00781 0.94340 1.02823 1.23278 0.98029 0.89145 0.95404 1.69802 1.22795 1.27229 0.98614 1.20697 1.01936 0.95318 0.96087 1.20734 1.07195 1.02189 0.82904 1.44964 1.39246 1.23042 1.06187 1.22029 1.00784 0.97635 0.86789 1.20546 0.98503 0.94631 0.96541 1.21342 0.86920 1.01261 0.90381 1.58155 1.38257 1.32501 1.55255 1.05704 0.75689 0.75046 0.74370 1.93528 1.53243 1.72666 1.75839 1.93547 1.76380 1.58422 1.66638 1.30488 1.14797 1.13759 1.13095 1.18957 0.95848 0.94226 0.91985 1.20958 1.20764 1.20652 0.93547 0.92217 1.25058 0.97244 0.97207 0.94912 1.69941 1.40371 1.37471 1.05060 0.86543 0.81166 0.80466 0.79190 1.20138 1.21026 1.20085 1.19475 0.99977 0.85012 0.86659 0.91096 0.91940 0.92678 0.90378 0.91143 0.92928 0.91960 0.90356 0.89559 0.89544 0.90008 0.89754 0.90479 0.87626 0.86309 0.86490 0.94855 0.94826 0.92470 0.88017 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 2 C 0.00 -0.03 3.25 -91.77 -0.30 -0.33 16 3 C -0.14 -1.05 9.17 37.15 0.34 -0.70 16 4 C 0.20 2.37 6.43 -154.65 -0.99 1.38 16 5 N -0.47 -6.74 11.25 -6.81 -0.08 -6.82 16 6 C -0.01 -0.13 7.08 -82.81 -0.59 -0.71 16 7 C -0.01 -0.18 6.77 -81.78 -0.55 -0.74 16 8 N -0.45 -4.78 3.15 -116.53 -0.37 -5.15 16 9 C 0.07 0.42 10.71 59.85 0.64 1.06 16 10 C -0.06 -0.62 6.14 -27.71 -0.17 -0.79 16 11 C 0.13 1.45 6.36 -3.52 -0.02 1.43 16 12 N -1.01 -14.56 3.20 -114.13 -0.36 -14.92 16 13 S 2.59 47.97 5.43 -107.50 -0.58 47.38 16 14 O -0.96 -19.66 16.62 -57.54 -0.96 -20.62 16 15 O -0.96 -20.42 16.92 -57.54 -0.97 -21.40 16 16 C -0.59 -11.66 6.12 37.16 0.23 -11.43 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.22 3.07 6.57 -4.54 -0.03 3.04 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 6.75 -51.93 -0.35 0.13 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.35 7.07 -51.93 -0.37 -0.02 16 36 H 0.09 0.40 7.68 -51.93 -0.40 0.00 16 37 H 0.08 0.59 7.81 -51.93 -0.41 0.18 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.18 6.91 -51.93 -0.36 0.83 16 41 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 42 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.10 1.52 7.43 -51.93 -0.39 1.14 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -36.89 391.71 -11.08 -47.98 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.73 Total: -1.45 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.66 Total: -21.34 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.07 Total: -52.84 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.93 Total: -42.01 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.58 Total: 47.38 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.89 -11.08 -47.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113299261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.341 kcal (2) G-P(sol) polarization free energy of solvation -36.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds