Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 C 1.50705 * 109.47020 * 119.99854 * 2 1 3 5 5 N 1.30762 * 125.61584 * 300.02356 * 4 2 1 6 6 C 1.33476 * 109.10079 * 180.02562 * 5 4 2 7 7 C 1.35168 * 108.21852 * 359.78677 * 6 5 4 8 8 N 1.35642 * 125.64277 * 119.87702 * 4 2 1 9 9 C 1.46501 * 126.50238 * 0.24347 * 8 4 2 10 10 C 1.50615 * 124.88543 * 180.16303 * 7 6 5 11 11 C 1.53411 * 108.80063 * 342.41171 * 10 7 6 12 12 N 1.47067 * 109.09441 * 45.06336 * 11 10 7 13 13 S 1.65590 * 120.81176 * 115.69708 * 12 11 10 14 14 O 1.42101 * 104.27979 * 26.05134 * 13 12 11 15 15 O 1.42099 * 104.27860 * 153.91050 * 13 12 11 16 16 C 1.81399 * 104.45238 * 269.98268 * 13 12 11 17 17 C 1.52998 * 109.47542 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47386 * 179.97438 * 17 16 13 19 19 H 1.07998 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46784 * 60.00105 * 22 20 18 24 24 H 1.48498 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47250 * 299.99702 * 22 20 18 26 26 C 1.47404 * 118.37650 * 295.68074 * 12 11 10 27 27 H 1.08999 * 109.46618 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.46898 * 60.00147 * 1 2 3 29 29 H 1.08994 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47027 * 239.99940 * 2 1 3 31 31 H 1.09002 * 109.47507 * 59.99631 * 3 2 1 32 32 H 1.09001 * 109.47723 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47106 * 299.99726 * 3 2 1 34 34 H 1.09004 * 109.46464 * 269.81387 * 9 8 4 35 35 H 1.08996 * 109.47126 * 29.80954 * 9 8 4 36 36 H 1.08994 * 109.47464 * 149.81474 * 9 8 4 37 37 H 1.08996 * 109.58306 * 222.61745 * 10 7 6 38 38 H 1.09003 * 109.69516 * 102.27315 * 10 7 6 39 39 H 1.09002 * 109.53501 * 285.18010 * 11 10 7 40 40 H 1.09004 * 109.53722 * 164.94465 * 11 10 7 41 41 H 1.09007 * 109.47090 * 300.00277 * 16 13 12 42 42 H 1.09000 * 109.47099 * 59.99719 * 16 13 12 43 43 H 1.08999 * 109.46912 * 300.00140 * 17 16 13 44 44 H 1.09000 * 109.47143 * 59.99759 * 17 16 13 45 45 H 0.96991 * 120.00110 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.89507 * 163.74602 * 26 12 11 47 47 H 1.08997 * 109.89270 * 284.78773 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7847 -0.3609 2.4660 6 6 2.3907 -1.2167 3.2918 7 6 3.0379 -2.1386 2.5446 8 7 2.8135 -1.8193 1.2395 9 6 3.3228 -2.5360 0.0677 10 6 3.8433 -3.2847 3.0980 11 6 4.1749 -2.9922 4.5670 12 7 2.9665 -2.4972 5.2436 13 16 2.2680 -3.3609 6.4716 14 8 3.3373 -4.1210 7.0178 15 8 1.5934 -2.3815 7.2493 16 6 1.0754 -4.4460 5.6405 17 6 0.3566 -5.3062 6.6818 18 6 -0.6347 -6.2072 5.9914 19 1 -0.7416 -6.1697 4.9173 20 6 -1.4058 -7.0786 6.7310 21 7 -1.2760 -7.1239 8.0389 22 14 -2.6351 -8.1949 5.8752 23 1 -1.9204 -9.0743 4.9154 24 1 -3.3326 -9.0299 6.8858 25 1 -3.6288 -7.3685 5.1440 26 6 2.3926 -1.2133 4.8021 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 2.6105 -3.3078 -0.2239 35 1 3.4573 -1.8356 -0.7565 36 1 4.2794 -2.9980 0.3117 37 1 4.7669 -3.3904 2.5291 38 1 3.2651 -4.2063 3.0305 39 1 4.9580 -2.2359 4.6202 40 1 4.5159 -3.9064 5.0528 41 1 0.3459 -3.8400 5.1031 42 1 1.6006 -5.0915 4.9366 43 1 1.0863 -5.9122 7.2188 44 1 -0.1686 -4.6610 7.3861 45 1 -1.8182 -7.7372 8.5592 46 1 1.3727 -1.1154 5.1741 47 1 3.0024 -0.3883 5.1704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113299261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = -49.881908 kcal Electronic energy + Delta-G solvation = -28567.457285 eV Core-core repulsion = 24683.825850 eV Total energy + Delta-G solvation = -3883.631435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.30432 -38.44783 -38.25565 -37.05220 -36.07176 -35.91366 -35.23067 -33.15070 -32.29703 -30.24886 -28.09261 -28.01855 -27.62113 -25.84913 -24.47542 -23.45828 -22.97848 -20.88825 -20.20267 -19.63971 -18.98187 -18.34733 -17.76503 -17.24167 -17.13109 -16.90518 -16.55191 -15.91774 -15.63850 -15.51838 -15.15742 -15.04951 -14.57740 -14.50277 -14.35307 -14.13559 -13.86900 -13.76649 -13.56674 -13.53450 -13.23918 -13.21951 -13.12759 -12.93465 -12.87906 -12.83108 -12.66430 -12.33896 -12.26553 -12.18450 -12.14135 -12.02192 -11.83126 -11.76546 -11.24051 -10.88730 -10.65658 -10.49545 -10.07236 -8.99288 -8.27400 -6.41812 -0.76810 1.00621 1.38372 1.42180 1.50455 1.61466 1.82957 2.04603 2.36360 2.80154 3.05020 3.06526 3.36004 3.58978 3.62042 3.89613 3.93863 3.95847 4.03835 4.06538 4.16937 4.20756 4.33662 4.41713 4.43451 4.48568 4.58535 4.61807 4.70832 4.71380 4.75446 4.83008 4.91109 4.97416 5.01301 5.06355 5.19197 5.24196 5.24655 5.35415 5.36605 5.41012 5.53616 5.65954 5.76382 6.04679 6.30570 6.70758 7.14990 7.28077 8.84698 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.003406 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.365158 B = 8218.515607 C = 9502.918867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 C -0.134 4.134 4 C 0.198 3.802 5 N -0.506 5.506 6 C -0.044 4.044 7 C -0.014 4.014 8 N -0.450 5.450 9 C 0.060 3.940 10 C -0.058 4.058 11 C 0.117 3.883 12 N -0.995 5.995 13 S 2.620 3.380 14 O -0.981 6.981 15 O -0.992 6.992 16 C -0.586 4.586 17 C 0.023 3.977 18 C -0.541 4.541 19 H 0.071 0.929 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.215 3.785 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.011 0.989 44 H 0.004 0.996 45 H 0.268 0.732 46 H 0.084 0.916 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 12.269 -23.387 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.192 4.192 4 C -0.064 4.064 5 N -0.224 5.224 6 C -0.175 4.175 7 C -0.131 4.131 8 N -0.131 5.131 9 C -0.081 4.081 10 C -0.098 4.098 11 C -0.008 4.008 12 N -0.833 5.833 13 S 2.718 3.282 14 O -0.971 6.971 15 O -0.982 6.982 16 C -0.718 4.718 17 C -0.016 4.016 18 C -0.580 4.580 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.191 1.191 26 C 0.089 3.911 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.030 0.970 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.460 12.877 -22.183 28.516 hybrid contribution -0.762 -1.438 -0.383 1.672 sum 11.698 11.440 -22.566 27.874 Atomic orbital electron populations 1.21760 0.93278 1.01704 1.02844 1.19704 0.96402 0.95972 0.90237 1.21733 1.00785 0.93858 1.02818 1.23894 0.97563 0.89428 0.95540 1.69730 1.24122 1.28508 1.00080 1.20701 1.03951 0.97002 0.95874 1.21009 1.06547 1.01939 0.83618 1.45231 1.38484 1.22667 1.06749 1.22416 1.01685 0.98207 0.85782 1.20608 0.99965 0.93647 0.95534 1.21707 0.85863 1.02023 0.91213 1.57750 1.38728 1.31946 1.54864 1.04630 0.74824 0.74319 0.74465 1.93495 1.53515 1.73373 1.76729 1.93499 1.77231 1.59230 1.68289 1.30390 1.15466 1.13931 1.12034 1.18805 0.95526 0.94291 0.92958 1.21446 1.21227 1.21005 0.94327 0.91049 1.26107 0.99425 0.98964 0.95585 1.70088 1.41666 1.38552 1.06885 0.85378 0.78455 0.78329 0.78184 1.18544 1.20685 1.19098 1.19455 0.99253 0.84767 0.87648 0.93541 0.89434 0.93618 0.87323 0.93479 0.92805 0.89609 0.89627 0.87254 0.87673 0.86244 0.89489 0.88436 0.87241 0.85507 0.84051 0.97033 0.97773 0.92289 0.89774 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 71.98 0.66 -1.49 16 2 C 0.00 -0.04 3.25 -11.54 -0.04 -0.08 16 3 C -0.13 -1.76 9.17 71.98 0.66 -1.10 16 4 C 0.20 4.34 6.43 137.86 0.89 5.23 16 5 N -0.51 -14.66 11.25 -175.45 -1.97 -16.63 16 6 C -0.04 -1.25 7.08 41.71 0.30 -0.96 16 7 C -0.01 -0.32 6.77 41.14 0.28 -0.04 16 8 N -0.45 -8.33 3.15 -522.58 -1.65 -9.98 16 9 C 0.06 0.48 10.71 127.77 1.37 1.84 16 10 C -0.06 -0.98 6.14 29.96 0.18 -0.79 16 11 C 0.12 2.43 6.36 86.41 0.55 2.98 16 12 N -1.00 -28.37 3.20 -514.99 -1.65 -30.02 16 13 S 2.62 98.90 5.43 -56.49 -0.31 98.60 16 14 O -0.98 -40.44 16.62 -127.65 -2.12 -42.56 16 15 O -0.99 -44.01 16.92 -127.65 -2.16 -46.17 16 16 C -0.59 -23.58 6.12 71.98 0.44 -23.14 16 17 C 0.02 1.24 4.98 29.85 0.15 1.39 16 18 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 19 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 21 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 22 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.21 6.24 6.57 85.56 0.56 6.81 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.90 6.75 -2.38 -0.02 0.89 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.11 0.37 7.07 -2.39 -0.02 0.36 16 36 H 0.10 0.47 7.68 -2.39 -0.02 0.45 16 37 H 0.12 1.15 7.81 -2.39 -0.02 1.13 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.23 6.91 -2.39 -0.02 2.21 16 41 H 0.13 4.85 8.14 -2.39 -0.02 4.83 16 42 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.08 2.68 7.43 -2.39 -0.02 2.66 16 47 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -83.00 391.71 0.10 -82.90 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.95 Total: 14.65 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 6.69 Total: -39.51 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -4.98 Total: -113.73 kcal Atomic # 8 Polarization: -84.45 SS G_CDS: -4.28 Total: -88.73 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 98.90 SS G_CDS: -0.31 Total: 98.60 kcal Total: -83.00 0.10 -82.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113299261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.015 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds