Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47475 * 2 1 4 4 C 1.52997 * 109.47310 * 175.00247 * 3 2 1 5 5 C 1.53002 * 109.47261 * 185.48072 * 4 3 2 6 6 N 1.46504 * 109.46992 * 295.00220 * 3 2 1 7 7 S 1.65603 * 120.00184 * 114.27649 * 6 3 2 8 8 O 1.42103 * 106.39937 * 310.30958 * 7 6 3 9 9 O 1.42099 * 106.40352 * 177.38908 * 7 6 3 10 10 C 1.76197 * 107.21907 * 63.84772 * 7 6 3 11 11 C 1.38884 * 120.33928 * 265.83490 * 10 7 6 12 12 C 1.38294 * 118.50845 * 179.75171 * 11 10 7 13 13 C 1.39143 * 119.09604 * 0.50741 * 12 11 10 14 14 N 1.39004 * 119.70586 * 179.75279 * 13 12 11 15 15 C 1.46499 * 120.00018 * 184.72985 * 14 13 12 16 16 C 1.46500 * 120.00057 * 4.73282 * 14 13 12 17 17 C 1.50708 * 109.46923 * 270.00102 * 16 14 13 18 18 H 1.07993 * 119.99972 * 359.71808 * 17 16 14 19 19 C 1.37875 * 119.99833 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99954 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47104 * 90.00366 * 21 19 17 23 23 H 1.48504 * 109.47217 * 209.99808 * 21 19 17 24 24 H 1.48489 * 109.47621 * 329.99990 * 21 19 17 25 25 N 1.32394 * 120.58682 * 359.48292 * 13 12 11 26 26 C 1.31977 * 121.62310 * 0.26933 * 25 13 12 27 27 H 1.09003 * 109.46798 * 300.00035 * 1 2 3 28 28 H 1.08996 * 109.46970 * 59.99512 * 1 2 3 29 29 H 1.08993 * 109.47154 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47461 * 240.00024 * 2 1 3 31 31 H 1.09003 * 109.47382 * 119.99969 * 2 1 3 32 32 H 1.09000 * 109.47262 * 54.99909 * 3 2 1 33 33 H 1.09001 * 109.46700 * 305.47612 * 4 3 2 34 34 H 1.08992 * 109.47578 * 65.48030 * 4 3 2 35 35 H 1.09000 * 109.47367 * 182.37551 * 5 4 3 36 36 H 1.08998 * 109.46764 * 302.37796 * 5 4 3 37 37 H 1.09002 * 109.47355 * 62.37467 * 5 4 3 38 38 H 0.97000 * 119.99510 * 294.27253 * 6 3 2 39 39 H 1.08005 * 120.74150 * 0.04402 * 11 10 7 40 40 H 1.08005 * 120.45621 * 180.28577 * 12 11 10 41 41 H 1.09002 * 109.46831 * 270.00361 * 15 14 13 42 42 H 1.09003 * 109.46677 * 29.99788 * 15 14 13 43 43 H 1.08994 * 109.46849 * 150.00156 * 15 14 13 44 44 H 1.08997 * 109.47682 * 149.99975 * 16 14 13 45 45 H 1.09001 * 109.47096 * 29.99251 * 16 14 13 46 46 H 0.97004 * 120.00369 * 180.02562 * 20 19 17 47 47 H 1.07998 * 119.57220 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0636 2.8841 0.2631 6 7 1.6525 2.0975 -1.2518 7 16 0.5800 3.3591 -1.2287 8 8 -0.5291 2.9287 -0.4515 9 8 0.4604 3.8088 -2.5714 10 6 1.3379 4.6716 -0.3301 11 6 1.0958 4.8226 1.0291 12 6 1.7145 5.8627 1.6983 13 6 2.5455 6.7243 0.9889 14 7 3.1698 7.7771 1.6478 15 6 3.9623 8.7486 0.8900 16 6 3.0352 7.9152 3.1001 17 6 1.8304 8.7644 3.4144 18 1 1.2283 9.1652 2.6125 19 6 1.5008 9.0348 4.7255 20 7 0.4498 9.7762 4.9998 21 14 2.5469 8.3480 6.1123 22 1 3.6248 9.3141 6.4445 23 1 1.6970 8.1239 7.3093 24 1 3.1507 7.0601 5.6860 25 7 2.7512 6.5471 -0.3069 26 6 2.1781 5.5603 -0.9699 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6055 1.9815 0.8418 33 1 3.8574 0.8728 1.0065 34 1 4.0033 0.9913 -0.7635 35 1 5.1526 2.8886 0.3102 36 1 3.7348 3.4662 -0.5978 37 1 3.6587 3.3235 1.1748 38 1 2.0241 1.7921 -2.0942 39 1 0.4427 4.1400 1.5527 40 1 1.5521 6.0066 2.7563 41 1 4.9968 8.4095 0.8349 42 1 3.5564 8.8418 -0.1173 43 1 3.9235 9.7170 1.3885 44 1 3.9294 8.3894 3.5045 45 1 2.9119 6.9296 3.5489 46 1 0.2180 9.9668 5.9223 47 1 2.3695 5.4463 -2.0267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152868075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = -42.475256 kcal Electronic energy + Delta-G solvation = -28926.194875 eV Core-core repulsion = 25042.884617 eV Total energy + Delta-G solvation = -3883.310258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.92607 -37.98282 -36.97446 -36.30642 -35.69557 -32.89887 -32.25525 -32.05580 -31.71202 -30.28141 -28.70927 -26.33238 -25.72595 -23.63821 -22.68640 -22.10322 -21.25341 -20.88336 -19.58562 -17.91989 -17.32774 -17.14290 -16.61158 -16.52764 -16.08061 -14.98860 -14.80062 -14.69939 -14.45898 -14.28392 -14.10285 -14.05349 -13.69788 -13.10691 -12.96760 -12.90485 -12.78134 -12.53133 -12.50419 -12.19882 -11.94964 -11.90543 -11.87473 -11.68431 -11.62414 -11.39173 -11.16450 -11.09628 -11.01139 -10.95526 -10.89394 -10.72720 -10.41921 -9.98010 -9.72686 -9.58862 -9.30333 -9.11972 -8.82804 -7.19403 -6.30676 -4.34017 0.57631 1.27378 1.68674 3.09218 3.11016 3.16373 3.18674 3.48646 3.82539 4.15536 4.16883 4.40229 4.50815 4.75041 4.79594 4.80118 4.99270 5.08561 5.10250 5.12916 5.31447 5.33585 5.39993 5.52404 5.60495 5.71138 5.74033 5.78500 5.82763 5.88526 5.89888 5.94092 5.98578 6.16746 6.18887 6.22201 6.23390 6.27618 6.29983 6.43723 6.54319 6.85569 6.90527 7.27858 7.35380 7.85854 8.20181 8.42385 8.75250 9.26346 10.81875 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003412 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.981203 B = 8203.626846 C = 8547.815779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.155 3.845 4 C -0.130 4.130 5 C -0.156 4.156 6 N -1.113 6.113 7 S 2.704 3.296 8 O -0.961 6.961 9 O -0.972 6.972 10 C -0.809 4.809 11 C 0.048 3.952 12 C -0.237 4.237 13 C 0.455 3.545 14 N -0.570 5.570 15 C 0.097 3.903 16 C 0.217 3.783 17 C -0.546 4.546 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.887 5.887 21 Si 0.872 3.128 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.264 1.264 25 N -0.563 5.563 26 C 0.253 3.747 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.268 0.732 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 -17.965 -9.582 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.047 3.953 4 C -0.169 4.169 5 C -0.213 4.213 6 N -0.871 5.871 7 S 2.795 3.205 8 O -0.951 6.951 9 O -0.962 6.962 10 C -0.905 4.905 11 C 0.022 3.978 12 C -0.263 4.263 13 C 0.217 3.783 14 N -0.273 5.273 15 C -0.046 4.046 16 C 0.096 3.904 17 C -0.584 4.584 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.524 5.524 21 Si 0.699 3.301 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.282 5.282 26 C 0.088 3.912 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.248 0.752 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.795 -16.966 -9.840 20.757 hybrid contribution 0.614 -0.363 1.370 1.545 sum 7.410 -17.329 -8.470 20.662 Atomic orbital electron populations 1.21792 0.94839 1.01135 1.03308 1.21908 0.97043 0.95785 1.02393 1.20869 0.95020 0.93953 0.85434 1.21888 0.94618 0.98011 1.02421 1.21834 1.00794 0.96115 1.02554 1.55689 1.66303 1.50508 1.14589 1.01389 0.73256 0.72645 0.73210 1.93569 1.48286 1.81111 1.72099 1.93558 1.85845 1.81414 1.35379 1.30899 1.25650 1.25226 1.08699 1.20842 0.91546 0.94269 0.91150 1.21657 1.03169 0.98685 1.02787 1.18675 0.85847 0.85853 0.87918 1.47009 1.48463 1.23378 1.08430 1.21576 0.93969 0.92108 0.96962 1.19906 0.98108 0.97991 0.74376 1.21348 1.10812 1.32287 0.93958 0.90320 1.24873 0.94894 0.94421 0.98474 1.69883 1.25684 1.36882 1.19903 0.86917 0.80735 0.80098 0.82391 1.19830 1.20639 1.18915 1.67301 1.29064 1.23987 1.07814 1.21915 0.85441 0.85676 0.98181 0.91854 0.92381 0.93130 0.91581 0.91000 0.89233 0.90939 0.91433 0.92861 0.92297 0.92498 0.75174 0.84195 0.83380 0.93772 0.91025 0.90959 0.94758 0.94541 0.92178 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.05 37.16 0.34 -1.09 16 2 C -0.13 -0.98 5.61 -26.73 -0.15 -1.13 16 3 C 0.15 1.29 2.25 -67.93 -0.15 1.14 16 4 C -0.13 -0.97 5.61 -26.73 -0.15 -1.12 16 5 C -0.16 -1.51 9.53 37.16 0.35 -1.15 16 6 N -1.11 -9.94 4.27 -4.89 -0.02 -9.96 16 7 S 2.70 34.77 5.59 -107.50 -0.60 34.17 16 8 O -0.96 -14.44 15.31 -57.17 -0.88 -15.32 16 9 O -0.97 -14.82 17.41 -57.17 -1.00 -15.81 16 10 C -0.81 -11.68 5.04 -39.42 -0.20 -11.88 16 11 C 0.05 0.74 9.60 -39.32 -0.38 0.37 16 12 C -0.24 -4.31 9.19 -39.23 -0.36 -4.67 16 13 C 0.46 8.68 7.37 -155.02 -1.14 7.53 16 14 N -0.57 -11.24 2.97 -183.10 -0.54 -11.79 16 15 C 0.10 1.63 10.42 59.85 0.62 2.25 16 16 C 0.22 4.69 3.86 -5.19 -0.02 4.67 16 17 C -0.55 -14.25 9.90 -34.44 -0.34 -14.59 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 19 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 21 Si 0.87 19.39 27.47 -169.99 -4.67 14.73 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 25 N -0.56 -9.86 9.16 -12.44 -0.11 -9.97 16 26 C 0.25 3.83 9.71 -17.57 -0.17 3.66 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.82 7.76 -51.93 -0.40 0.42 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.60 6.04 -51.93 -0.31 0.28 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.41 2.77 8.96 -34.48 -0.31 2.46 16 39 H 0.14 1.89 7.62 -52.48 -0.40 1.49 16 40 H 0.15 2.84 6.22 -52.48 -0.33 2.51 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.18 7.45 -51.93 -0.39 0.79 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.03 0.72 7.50 -51.93 -0.39 0.33 16 45 H 0.04 0.77 5.43 -51.93 -0.28 0.49 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.16 1.99 7.71 -52.49 -0.40 1.59 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -32.14 388.80 -10.42 -42.56 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.39 Total: 4.41 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.85 Total: -14.05 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.09 Total: -56.55 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.87 Total: -31.13 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.73 kcal Atomic # 16 Polarization: 34.77 SS G_CDS: -0.60 Total: 34.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.14 -10.42 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152868075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.084 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds