Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47475 * 2 1 4 4 C 1.52997 * 109.47310 * 175.00247 * 3 2 1 5 5 C 1.53002 * 109.47261 * 185.48072 * 4 3 2 6 6 N 1.46504 * 109.46992 * 295.00220 * 3 2 1 7 7 S 1.65603 * 120.00184 * 114.27649 * 6 3 2 8 8 O 1.42103 * 106.39937 * 310.30958 * 7 6 3 9 9 O 1.42099 * 106.40352 * 177.38908 * 7 6 3 10 10 C 1.76197 * 107.21907 * 63.84772 * 7 6 3 11 11 C 1.38884 * 120.33928 * 265.83490 * 10 7 6 12 12 C 1.38294 * 118.50845 * 179.75171 * 11 10 7 13 13 C 1.39143 * 119.09604 * 0.50741 * 12 11 10 14 14 N 1.39004 * 119.70586 * 179.75279 * 13 12 11 15 15 C 1.46499 * 120.00018 * 184.72985 * 14 13 12 16 16 C 1.46500 * 120.00057 * 4.73282 * 14 13 12 17 17 C 1.50708 * 109.46923 * 270.00102 * 16 14 13 18 18 H 1.07993 * 119.99972 * 359.71808 * 17 16 14 19 19 C 1.37875 * 119.99833 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99954 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47104 * 90.00366 * 21 19 17 23 23 H 1.48504 * 109.47217 * 209.99808 * 21 19 17 24 24 H 1.48489 * 109.47621 * 329.99990 * 21 19 17 25 25 N 1.32394 * 120.58682 * 359.48292 * 13 12 11 26 26 C 1.31977 * 121.62310 * 0.26933 * 25 13 12 27 27 H 1.09003 * 109.46798 * 300.00035 * 1 2 3 28 28 H 1.08996 * 109.46970 * 59.99512 * 1 2 3 29 29 H 1.08993 * 109.47154 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47461 * 240.00024 * 2 1 3 31 31 H 1.09003 * 109.47382 * 119.99969 * 2 1 3 32 32 H 1.09000 * 109.47262 * 54.99909 * 3 2 1 33 33 H 1.09001 * 109.46700 * 305.47612 * 4 3 2 34 34 H 1.08992 * 109.47578 * 65.48030 * 4 3 2 35 35 H 1.09000 * 109.47367 * 182.37551 * 5 4 3 36 36 H 1.08998 * 109.46764 * 302.37796 * 5 4 3 37 37 H 1.09002 * 109.47355 * 62.37467 * 5 4 3 38 38 H 0.97000 * 119.99510 * 294.27253 * 6 3 2 39 39 H 1.08005 * 120.74150 * 0.04402 * 11 10 7 40 40 H 1.08005 * 120.45621 * 180.28577 * 12 11 10 41 41 H 1.09002 * 109.46831 * 270.00361 * 15 14 13 42 42 H 1.09003 * 109.46677 * 29.99788 * 15 14 13 43 43 H 1.08994 * 109.46849 * 150.00156 * 15 14 13 44 44 H 1.08997 * 109.47682 * 149.99975 * 16 14 13 45 45 H 1.09001 * 109.47096 * 29.99251 * 16 14 13 46 46 H 0.97004 * 120.00369 * 180.02562 * 20 19 17 47 47 H 1.07998 * 119.57220 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0636 2.8841 0.2631 6 7 1.6525 2.0975 -1.2518 7 16 0.5800 3.3591 -1.2287 8 8 -0.5291 2.9287 -0.4515 9 8 0.4604 3.8088 -2.5714 10 6 1.3379 4.6716 -0.3301 11 6 1.0958 4.8226 1.0291 12 6 1.7145 5.8627 1.6983 13 6 2.5455 6.7243 0.9889 14 7 3.1698 7.7771 1.6478 15 6 3.9623 8.7486 0.8900 16 6 3.0352 7.9152 3.1001 17 6 1.8304 8.7644 3.4144 18 1 1.2283 9.1652 2.6125 19 6 1.5008 9.0348 4.7255 20 7 0.4498 9.7762 4.9998 21 14 2.5469 8.3480 6.1123 22 1 3.6248 9.3141 6.4445 23 1 1.6970 8.1239 7.3093 24 1 3.1507 7.0601 5.6860 25 7 2.7512 6.5471 -0.3069 26 6 2.1781 5.5603 -0.9699 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6055 1.9815 0.8418 33 1 3.8574 0.8728 1.0065 34 1 4.0033 0.9913 -0.7635 35 1 5.1526 2.8886 0.3102 36 1 3.7348 3.4662 -0.5978 37 1 3.6587 3.3235 1.1748 38 1 2.0241 1.7921 -2.0942 39 1 0.4427 4.1400 1.5527 40 1 1.5521 6.0066 2.7563 41 1 4.9968 8.4095 0.8349 42 1 3.5564 8.8418 -0.1173 43 1 3.9235 9.7170 1.3885 44 1 3.9294 8.3894 3.5045 45 1 2.9119 6.9296 3.5489 46 1 0.2180 9.9668 5.9223 47 1 2.3695 5.4463 -2.0267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152868075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -64.221122 kcal Electronic energy + Delta-G solvation = -28927.137847 eV Core-core repulsion = 25042.884617 eV Total energy + Delta-G solvation = -3884.253230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.27742 -38.75592 -38.08382 -37.76859 -36.86195 -34.81085 -33.54640 -32.86155 -32.48223 -31.64395 -30.43594 -27.20857 -27.04215 -25.17932 -24.14389 -22.74614 -22.38182 -21.93924 -20.62787 -19.16196 -19.06351 -18.48617 -17.87123 -17.84885 -16.99609 -16.46558 -15.91355 -15.85503 -15.74726 -15.45708 -15.29688 -15.04359 -14.72342 -14.49964 -14.32008 -14.19166 -13.93595 -13.72773 -13.55916 -13.29953 -13.25052 -13.24300 -13.05421 -12.95551 -12.78401 -12.51310 -12.36681 -12.28965 -12.08763 -11.88433 -11.80802 -11.77819 -11.65530 -11.59884 -11.26845 -10.86800 -10.73535 -10.54283 -10.27193 -8.65499 -8.36067 -6.45217 -0.50704 -0.02763 0.35876 1.35548 1.36727 1.46611 1.99214 2.17797 2.28657 2.65064 2.92397 2.97308 3.40576 3.48724 3.74263 3.85354 4.03956 4.13618 4.15660 4.24599 4.41245 4.43289 4.48839 4.56933 4.61614 4.65673 4.68860 4.74924 4.82187 4.84755 4.90418 4.92042 5.01345 5.02882 5.11156 5.21129 5.24821 5.27401 5.35448 5.47638 5.52761 5.54437 5.60054 5.79966 6.22901 6.25520 6.42659 6.59715 7.01119 7.21256 8.80459 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003412 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.981203 B = 8203.626846 C = 8547.815779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.127 4.127 3 C 0.148 3.852 4 C -0.122 4.122 5 C -0.158 4.158 6 N -1.095 6.095 7 S 2.727 3.273 8 O -0.980 6.980 9 O -0.992 6.992 10 C -0.801 4.801 11 C 0.057 3.943 12 C -0.261 4.261 13 C 0.437 3.563 14 N -0.587 5.587 15 C 0.099 3.901 16 C 0.228 3.772 17 C -0.545 4.545 18 H 0.025 0.975 19 C 0.017 3.983 20 N -0.942 5.942 21 Si 0.946 3.054 22 H -0.262 1.262 23 H -0.283 1.283 24 H -0.238 1.238 25 N -0.569 5.569 26 C 0.247 3.753 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.429 0.571 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.270 0.730 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -21.019 -10.027 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C 0.041 3.959 4 C -0.161 4.161 5 C -0.216 4.216 6 N -0.858 5.858 7 S 2.816 3.184 8 O -0.970 6.970 9 O -0.982 6.982 10 C -0.894 4.894 11 C 0.031 3.969 12 C -0.286 4.286 13 C 0.200 3.800 14 N -0.292 5.292 15 C -0.043 4.043 16 C 0.106 3.894 17 C -0.584 4.584 18 H 0.043 0.957 19 C -0.182 4.182 20 N -0.581 5.581 21 Si 0.768 3.232 22 H -0.186 1.186 23 H -0.209 1.209 24 H -0.161 1.161 25 N -0.288 5.288 26 C 0.083 3.917 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.266 0.734 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.895 -20.028 -10.338 24.231 hybrid contribution -0.138 0.491 1.338 1.432 sum 8.757 -19.538 -9.000 23.225 Atomic orbital electron populations 1.21836 0.96455 1.01509 1.01837 1.21896 0.95483 0.95085 1.04112 1.21057 0.95878 0.94474 0.84474 1.21849 0.93505 0.96727 1.04025 1.21851 1.01030 0.97479 1.01206 1.55312 1.65759 1.48833 1.15883 1.00685 0.73154 0.72493 0.72069 1.93552 1.49670 1.81260 1.72519 1.93529 1.86348 1.82098 1.36238 1.31246 1.24389 1.25584 1.08211 1.21066 0.90720 0.93456 0.91698 1.21636 1.04554 1.00090 1.02360 1.18833 0.86374 0.86119 0.88645 1.46952 1.49847 1.24551 1.07875 1.21637 0.94912 0.91429 0.96347 1.19641 0.96307 0.97323 0.76143 1.21517 1.11767 1.32399 0.92703 0.95701 1.25851 0.96162 0.94595 1.01550 1.70058 1.28246 1.39198 1.20645 0.85741 0.78842 0.80571 0.78023 1.18630 1.20874 1.16118 1.67319 1.29574 1.24759 1.07146 1.22412 0.85008 0.84983 0.99261 0.93382 0.93808 0.91917 0.89800 0.89316 0.90240 0.89519 0.89527 0.92525 0.93039 0.94422 0.73378 0.82451 0.84935 0.91343 0.91205 0.91642 0.93179 0.93665 0.92127 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.05 71.98 0.65 -1.99 16 2 C -0.13 -1.47 5.61 30.59 0.17 -1.29 16 3 C 0.15 2.07 2.25 44.99 0.10 2.17 16 4 C -0.12 -1.41 5.61 30.59 0.17 -1.24 16 5 C -0.16 -2.73 9.53 71.98 0.69 -2.04 16 6 N -1.10 -16.81 4.27 -169.39 -0.72 -17.54 16 7 S 2.73 65.95 5.59 -56.49 -0.32 65.64 16 8 O -0.98 -28.41 15.31 -128.00 -1.96 -30.37 16 9 O -0.99 -28.57 17.41 -128.00 -2.23 -30.80 16 10 C -0.80 -22.35 5.04 22.37 0.11 -22.23 16 11 C 0.06 1.74 9.60 22.44 0.22 1.95 16 12 C -0.26 -9.63 9.19 22.50 0.21 -9.43 16 13 C 0.44 16.82 7.37 133.07 0.98 17.80 16 14 N -0.59 -23.41 2.97 -733.20 -2.18 -25.59 16 15 C 0.10 3.33 10.42 127.77 1.33 4.66 16 16 C 0.23 9.85 3.86 85.64 0.33 10.18 16 17 C -0.55 -29.55 9.90 25.60 0.25 -29.30 16 18 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 19 C 0.02 0.95 5.47 84.65 0.46 1.42 16 20 N -0.94 -56.62 13.96 21.45 0.30 -56.32 16 21 Si 0.95 39.89 27.47 68.60 1.88 41.77 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -8.95 6.54 99.48 0.65 -8.30 16 25 N -0.57 -19.71 9.16 -193.26 -1.77 -21.48 16 26 C 0.25 7.21 9.71 84.62 0.82 8.03 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.84 6.87 -2.39 -0.02 0.82 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.30 7.76 -2.39 -0.02 1.29 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.94 6.04 -2.39 -0.01 0.92 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.43 4.35 8.96 -96.74 -0.87 3.48 16 39 H 0.16 4.18 7.62 -2.91 -0.02 4.16 16 40 H 0.13 5.24 6.22 -2.91 -0.02 5.23 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.32 7.45 -2.39 -0.02 2.30 16 43 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 44 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 45 H 0.05 1.89 5.43 -2.39 -0.01 1.87 16 46 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.19 4.29 7.71 -2.91 -0.02 4.27 16 Total: -1.00 -72.24 388.80 -0.45 -72.69 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.05 Total: 23.32 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 6.50 Total: -21.32 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.37 Total: -120.93 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -4.19 Total: -61.17 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.88 Total: 41.77 kcal Atomic # 16 Polarization: 65.95 SS G_CDS: -0.32 Total: 65.64 kcal Total: -72.24 -0.45 -72.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152868075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.464 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds