Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30177 * 126.80100 * 2 1 4 4 O 1.20922 * 111.60501 * 180.25766 * 3 2 1 5 5 C 1.34039 * 111.56518 * 359.74667 * 4 3 2 6 6 C 1.50703 * 126.77794 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44794 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00927 * 179.97438 * 7 5 4 9 9 N 1.46896 * 109.47209 * 90.00240 * 8 7 5 10 10 C 1.46903 * 111.00003 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47116 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.46884 * 295.00686 * 11 10 9 13 13 C 1.52997 * 109.47127 * 174.99934 * 11 10 9 14 14 N 1.46497 * 109.46631 * 55.00150 * 11 10 9 15 15 C 1.46505 * 120.00341 * 60.00014 * 14 11 10 16 16 C 1.34779 * 119.99848 * 239.99844 * 14 11 10 17 17 O 1.21282 * 120.00232 * 0.02562 * 16 14 11 18 18 C 1.50702 * 120.00153 * 180.02562 * 16 14 11 19 19 S 1.80995 * 109.47490 * 180.02562 * 18 16 14 20 20 C 1.76192 * 100.00289 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00483 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99429 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00566 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46993 * 59.99872 * 24 22 20 26 26 H 1.48493 * 109.47378 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46619 * 299.99832 * 24 22 20 28 28 H 1.09007 * 109.47091 * 270.16488 * 1 2 3 29 29 H 1.09006 * 109.47308 * 30.15936 * 1 2 3 30 30 H 1.08997 * 109.47358 * 150.16647 * 1 2 3 31 31 H 1.09002 * 109.46870 * 269.99769 * 6 5 4 32 32 H 1.08996 * 109.47480 * 29.99751 * 6 5 4 33 33 H 1.09004 * 109.47357 * 150.00236 * 6 5 4 34 34 H 1.09003 * 109.47043 * 330.00429 * 8 7 5 35 35 H 1.09001 * 109.47187 * 210.00690 * 8 7 5 36 36 H 1.00901 * 111.00112 * 56.04959 * 9 8 7 37 37 H 1.08995 * 109.47000 * 60.00372 * 10 9 8 38 38 H 1.09001 * 109.47025 * 300.00025 * 10 9 8 39 39 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 41 41 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 42 42 H 1.09005 * 109.46851 * 89.99998 * 15 14 11 43 43 H 1.08997 * 109.47129 * 209.99273 * 15 14 11 44 44 H 1.08993 * 109.46804 * 329.99912 * 15 14 11 45 45 H 1.09009 * 109.47061 * 300.00107 * 18 16 14 46 46 H 1.08996 * 109.47578 * 59.99511 * 18 16 14 47 47 H 0.97002 * 120.00046 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0051 5 6 3.6024 -0.6067 -0.0037 6 6 4.9021 -1.3695 -0.0081 7 6 2.3539 -1.1320 0.0037 8 6 1.9590 -2.5863 0.0076 9 7 1.8381 -3.0572 1.3937 10 6 1.4529 -4.4742 1.4367 11 6 1.3378 -4.9275 2.8935 12 1 2.3184 -4.8806 3.3671 13 6 0.8167 -6.3652 2.9406 14 7 0.4086 -4.0476 3.6066 15 6 -0.9822 -3.9348 3.1601 16 6 0.8331 -3.3419 4.6735 17 8 1.9845 -3.4350 5.0430 18 6 -0.1229 -2.4372 5.4075 19 16 0.7402 -1.6342 6.7809 20 6 -0.5738 -0.6652 7.4434 21 1 -1.5526 -0.6992 6.9881 22 6 -0.3514 0.1410 8.5511 23 7 0.8414 0.1821 9.1064 24 14 -1.7447 1.1678 9.2540 25 1 -2.8531 0.2747 9.6770 26 1 -1.2518 1.9351 10.4259 27 1 -2.2366 2.1103 8.2172 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8886 -0.5163 30 1 -0.3634 -0.8914 -0.5112 31 1 5.2110 -1.5550 -1.0369 32 1 5.6682 -0.7851 0.5015 33 1 4.7673 -2.3203 0.5077 34 1 2.7200 -3.1708 -0.5096 35 1 1.0022 -2.7044 -0.5011 36 1 1.1852 -2.4895 1.9128 37 1 2.2100 -5.0720 0.9294 38 1 0.4925 -4.6048 0.9381 39 1 0.7342 -6.6880 3.9785 40 1 1.5081 -7.0198 2.4100 41 1 -0.1639 -6.4119 2.4670 42 1 -1.5888 -4.6846 3.6680 43 1 -1.3603 -2.9403 3.3970 44 1 -1.0322 -4.0955 2.0832 45 1 -0.5022 -1.6779 4.7235 46 1 -0.9548 -3.0253 5.7949 47 1 0.9968 0.7452 9.8808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = 22.597314 kcal Electronic energy + Delta-G solvation = -27954.554419 eV Core-core repulsion = 24074.065919 eV Total energy + Delta-G solvation = -3880.488500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.96156 -39.79111 -37.30251 -35.82331 -34.23239 -33.43698 -32.41056 -31.95937 -28.89762 -28.71028 -28.40444 -26.86493 -26.66981 -25.46835 -24.15679 -21.67312 -21.41817 -20.26811 -18.96628 -17.71518 -17.71077 -17.04980 -16.91796 -16.24794 -15.73588 -15.31467 -14.84154 -14.78934 -14.65480 -14.16628 -13.78319 -13.66128 -13.59971 -13.32194 -13.23093 -13.14650 -13.03659 -12.84281 -12.75675 -12.46611 -12.39642 -12.37484 -12.12171 -12.04032 -11.95424 -11.56493 -11.05562 -11.02895 -11.01288 -10.96599 -10.74902 -9.96472 -9.79641 -9.29308 -9.27157 -9.04221 -8.70955 -8.43054 -8.20449 -6.47601 -6.19683 -3.90053 1.39829 2.08573 2.93585 3.04654 3.10299 3.24273 3.26556 3.29982 3.61324 4.00560 4.10538 4.22087 4.34214 4.58618 4.75198 4.78087 4.94283 4.99967 5.05477 5.09638 5.13117 5.15250 5.22451 5.24319 5.29831 5.32830 5.35453 5.36637 5.42666 5.51859 5.54554 5.59100 5.59914 5.66316 5.68037 5.83182 5.89692 5.97655 6.03752 6.10050 6.13316 6.67494 6.80247 7.15906 7.55400 7.60650 8.23923 8.36325 8.61089 9.25378 10.87666 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.003405 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.586620 B = 8221.915853 C = 9969.005469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.366 5.366 4 O 0.096 5.904 5 C -0.007 4.007 6 C -0.075 4.075 7 C -0.206 4.206 8 C 0.142 3.858 9 N -0.679 5.679 10 C 0.052 3.948 11 C 0.137 3.863 12 H 0.110 0.890 13 C -0.158 4.158 14 N -0.621 5.621 15 C 0.077 3.923 16 C 0.535 3.465 17 O -0.508 6.508 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.348 0.652 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -10.378 -23.091 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.072 5.072 4 O 0.032 5.968 5 C -0.072 4.072 6 C -0.132 4.132 7 C -0.210 4.210 8 C 0.013 3.987 9 N -0.312 5.312 10 C -0.078 4.078 11 C 0.033 3.967 12 H 0.128 0.872 13 C -0.217 4.217 14 N -0.358 5.358 15 C -0.066 4.066 16 C 0.323 3.677 17 O -0.381 6.381 18 C -0.300 4.300 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.168 0.832 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.146 -9.240 -22.320 24.253 hybrid contribution -3.460 0.111 -0.215 3.468 sum -1.313 -9.129 -22.536 24.350 Atomic orbital electron populations 1.20170 0.86229 1.03376 1.03686 1.23421 0.98802 0.88639 1.02629 1.73850 0.89251 1.23888 1.20205 1.84807 1.21661 1.22633 1.67737 1.24281 0.98312 0.83622 1.00943 1.20375 0.89991 0.99288 1.03548 1.20743 0.91827 0.96901 1.11543 1.20034 0.99966 0.88326 0.90388 1.60386 1.55937 1.03064 1.11786 1.22329 0.99035 0.89722 0.96726 1.21059 0.95603 0.88721 0.91271 0.87194 1.22093 1.01237 0.95561 1.02816 1.47908 1.10775 1.45914 1.31184 1.21726 0.82568 1.02674 0.99672 1.20287 0.88630 0.79577 0.79212 1.90695 1.18799 1.63823 1.64809 1.23553 1.02109 1.00882 1.03500 1.85414 1.15981 1.53338 1.28493 1.22815 0.97703 1.30411 1.17528 0.91097 1.24976 0.96413 0.96342 0.95738 1.70009 1.20872 1.37885 1.21464 0.86250 0.81183 0.79769 0.78464 1.19948 1.20785 1.19958 0.89859 0.90479 0.90490 0.89774 0.89731 0.88341 0.89835 0.94207 0.83202 0.89954 0.95072 0.91787 0.91546 0.92581 0.92678 0.90759 0.91792 0.89564 0.89459 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 36.00 0.37 -0.38 16 2 C 0.02 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -5.48 12.07 33.42 0.40 -5.08 16 4 O 0.10 1.33 11.20 17.18 0.19 1.52 16 5 C -0.01 -0.08 7.49 -35.30 -0.26 -0.35 16 6 C -0.07 -0.58 10.25 36.01 0.37 -0.21 16 7 C -0.21 -2.36 5.83 -104.42 -0.61 -2.97 16 8 C 0.14 1.28 5.93 -4.98 -0.03 1.25 16 9 N -0.68 -7.40 6.48 -115.06 -0.75 -8.15 16 10 C 0.05 0.46 4.98 -3.82 -0.02 0.44 16 11 C 0.14 1.53 2.95 -67.93 -0.20 1.33 16 12 H 0.11 1.57 6.90 -51.93 -0.36 1.21 16 13 C -0.16 -1.37 9.19 37.16 0.34 -1.03 16 14 N -0.62 -8.11 1.83 -173.93 -0.32 -8.42 16 15 C 0.08 0.74 9.28 59.85 0.56 1.30 16 16 C 0.54 9.91 7.69 -10.98 -0.08 9.83 16 17 O -0.51 -11.48 15.19 5.56 0.08 -11.40 16 18 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 24 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.04 0.31 7.65 -51.93 -0.40 -0.08 16 36 H 0.35 4.44 7.85 -39.29 -0.31 4.13 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.23 6.88 -51.93 -0.36 -0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 44 H 0.06 0.46 6.53 -51.93 -0.34 0.13 16 45 H 0.09 1.62 7.40 -51.91 -0.38 1.23 16 46 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -36.07 402.92 -8.07 -44.15 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.46 Total: 1.19 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.20 Total: -6.96 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.07 Total: -47.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.28 Total: -9.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.07 -8.07 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.746 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds