Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30180 * 126.80175 * 2 1 4 4 O 1.20915 * 111.60310 * 180.24947 * 3 2 1 5 5 C 1.34041 * 111.56995 * 359.74368 * 4 3 2 6 6 C 1.50703 * 126.77789 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44697 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.00861 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47054 * 89.99951 * 8 7 5 10 10 C 1.46898 * 110.99673 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46579 * 64.99640 * 11 10 9 13 13 C 1.52999 * 109.47054 * 184.99905 * 11 10 9 14 14 N 1.46496 * 109.47070 * 305.00086 * 11 10 9 15 15 C 1.46498 * 120.00203 * 299.99706 * 14 11 10 16 16 C 1.34778 * 120.00018 * 120.00211 * 14 11 10 17 17 O 1.21286 * 119.99873 * 359.97438 * 16 14 11 18 18 C 1.50703 * 120.00016 * 179.97438 * 16 14 11 19 19 S 1.81003 * 109.46997 * 179.97438 * 18 16 14 20 20 C 1.76196 * 99.99967 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99809 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00383 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00436 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99655 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47046 * 89.99773 * 24 22 20 26 26 H 1.48498 * 109.46991 * 209.99991 * 24 22 20 27 27 H 1.48509 * 109.46915 * 330.00085 * 24 22 20 28 28 H 1.09002 * 109.47145 * 270.16743 * 1 2 3 29 29 H 1.08997 * 109.47477 * 30.17192 * 1 2 3 30 30 H 1.09003 * 109.47056 * 150.17193 * 1 2 3 31 31 H 1.08996 * 109.47176 * 270.00031 * 6 5 4 32 32 H 1.09001 * 109.46637 * 29.99896 * 6 5 4 33 33 H 1.09005 * 109.46964 * 150.00052 * 6 5 4 34 34 H 1.08993 * 109.46849 * 329.99915 * 8 7 5 35 35 H 1.08995 * 109.46627 * 209.99250 * 8 7 5 36 36 H 1.00895 * 111.00497 * 56.04005 * 9 8 7 37 37 H 1.09001 * 109.47062 * 59.99745 * 10 9 8 38 38 H 1.08993 * 109.47084 * 299.99192 * 10 9 8 39 39 H 1.09001 * 109.47018 * 300.00144 * 13 11 10 40 40 H 1.08995 * 109.47070 * 60.00530 * 13 11 10 41 41 H 1.09002 * 109.47069 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.47067 * 90.00306 * 15 14 11 43 43 H 1.08998 * 109.47514 * 210.00471 * 15 14 11 44 44 H 1.09002 * 109.47093 * 330.00466 * 15 14 11 45 45 H 1.08992 * 109.47163 * 299.99611 * 18 16 14 46 46 H 1.09000 * 109.47166 * 59.99809 * 18 16 14 47 47 H 0.96995 * 119.99736 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0033 6 6 4.9022 -1.3695 -0.0086 7 6 2.3540 -1.1321 0.0028 8 6 1.9591 -2.5864 0.0064 9 7 1.8369 -3.0572 1.3925 10 6 1.4529 -4.4745 1.4351 11 6 1.3364 -4.9278 2.8918 12 1 0.5185 -4.3927 3.3745 13 6 1.0592 -6.4318 2.9373 14 7 2.5895 -4.6407 3.5943 15 6 3.8421 -5.2456 3.1346 16 6 2.5900 -3.8202 4.6635 17 8 1.5530 -3.3191 5.0439 18 6 3.8790 -3.5253 5.3865 19 16 3.5531 -2.3999 6.7661 20 6 5.1828 -2.2304 7.4141 21 1 6.0058 -2.7528 6.9492 22 6 5.4089 -1.4254 8.5221 23 7 6.6263 -1.2992 9.0066 24 14 3.9855 -0.5213 9.3257 25 1 3.3869 -1.3784 10.3805 26 1 4.4804 0.7397 9.9342 27 1 2.9574 -0.2065 8.3012 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 5.2103 -1.5552 -1.0375 32 1 5.6686 -0.7848 0.5003 33 1 4.7677 -2.3201 0.5076 34 1 2.7205 -3.1708 -0.5101 35 1 1.0027 -2.7044 -0.5030 36 1 1.1836 -2.4895 1.9111 37 1 2.2111 -5.0717 0.9286 38 1 0.4932 -4.6060 0.9355 39 1 0.1268 -6.6453 2.4147 40 1 1.8770 -6.9667 2.4548 41 1 0.9757 -6.7546 3.9751 42 1 4.3148 -4.5905 2.4027 43 1 4.5115 -5.3846 3.9835 44 1 3.6321 -6.2116 2.6755 45 1 4.3026 -4.4545 5.7675 46 1 4.5839 -3.0603 4.6973 47 1 6.7842 -0.7364 9.7806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 22.165586 kcal Electronic energy + Delta-G solvation = -27993.428009 eV Core-core repulsion = 24112.920788 eV Total energy + Delta-G solvation = -3880.507221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.99184 -39.74257 -37.34059 -35.86697 -34.30245 -33.49903 -32.39923 -31.92676 -28.94876 -28.75518 -28.42513 -26.90731 -26.60751 -25.57098 -24.18739 -21.71749 -21.46384 -20.31176 -19.06558 -17.74341 -17.65935 -17.06545 -16.96622 -16.16822 -15.57434 -15.31663 -15.01152 -14.87337 -14.68377 -14.23981 -13.80443 -13.72257 -13.63498 -13.30134 -13.22991 -13.18214 -13.05382 -12.86913 -12.75248 -12.66349 -12.38082 -12.34277 -12.22748 -12.12879 -11.92899 -11.61504 -11.21625 -11.06694 -10.98275 -10.96809 -10.52361 -10.00805 -9.81800 -9.36361 -9.29644 -8.96351 -8.66270 -8.44412 -8.41219 -6.85917 -6.25259 -3.95772 1.37167 2.04639 2.79170 3.02102 3.07739 3.26511 3.35936 3.54152 3.65340 3.96746 4.07001 4.30763 4.36918 4.53409 4.63524 4.74736 4.80453 4.93128 5.05293 5.09329 5.13192 5.14142 5.18116 5.22927 5.23865 5.27295 5.30029 5.30664 5.36168 5.46743 5.48955 5.52319 5.55228 5.64939 5.77784 5.83102 5.85666 5.91102 5.99741 6.00807 6.09789 6.63871 6.78263 7.11797 7.58484 7.98001 8.20439 8.45248 8.57658 9.21527 10.84088 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.003562 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.521165 B = 7858.188132 C = 9507.396973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 N -0.367 5.367 4 O 0.096 5.904 5 C -0.004 4.004 6 C -0.075 4.075 7 C -0.206 4.206 8 C 0.143 3.857 9 N -0.677 5.677 10 C 0.052 3.948 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.160 4.160 14 N -0.601 5.601 15 C 0.082 3.918 16 C 0.539 3.461 17 O -0.526 6.526 18 C -0.118 4.118 19 S -0.145 6.145 20 C -0.519 4.519 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.882 5.882 24 Si 0.855 3.145 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.236 1.236 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.348 0.652 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 -8.649 -23.471 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.074 5.074 4 O 0.032 5.968 5 C -0.069 4.069 6 C -0.133 4.133 7 C -0.210 4.210 8 C 0.014 3.986 9 N -0.309 5.309 10 C -0.079 4.079 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.218 4.218 14 N -0.336 5.336 15 C -0.061 4.061 16 C 0.327 3.673 17 O -0.402 6.402 18 C -0.268 4.268 19 S 0.081 5.919 20 C -0.666 4.666 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.518 5.518 24 Si 0.680 3.320 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.912 -6.637 -22.710 25.652 hybrid contribution -0.026 -0.843 -0.190 0.864 sum -9.939 -7.479 -22.900 26.060 Atomic orbital electron populations 1.20157 0.86262 1.03371 1.03565 1.23422 0.98766 0.88701 1.02731 1.73847 0.89291 1.23936 1.20283 1.84810 1.21600 1.22694 1.67701 1.24294 0.98328 0.83567 1.00678 1.20383 0.90060 0.99257 1.03575 1.20731 0.91764 0.96884 1.11666 1.20017 0.99940 0.88279 0.90343 1.60363 1.55826 1.02887 1.11829 1.22349 0.99225 0.89582 0.96696 1.20988 0.88379 0.95817 0.91460 0.88292 1.22098 1.01711 0.95121 1.02895 1.47539 1.07793 1.48119 1.30105 1.21698 0.86033 0.97746 1.00626 1.20169 0.90558 0.77301 0.79283 1.90661 1.33715 1.50247 1.65531 1.23275 0.97795 1.04134 1.01599 1.84773 1.15586 1.58772 1.32759 1.22316 0.91978 1.34751 1.17602 0.89465 1.24695 0.95794 0.95195 0.95539 1.69936 1.19924 1.38243 1.23736 0.86752 0.83497 0.80080 0.81635 1.19251 1.19998 1.15947 0.89966 0.90570 0.90457 0.89741 0.89573 0.88431 0.89922 0.94201 0.83316 0.90647 0.94403 0.91664 0.92169 0.91731 0.92430 0.91008 0.91682 0.88897 0.88608 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.01 0.37 -0.31 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 N -0.37 -5.31 12.07 33.42 0.40 -4.91 16 4 O 0.10 1.31 11.20 17.18 0.19 1.50 16 5 C 0.00 -0.05 7.49 -35.30 -0.26 -0.31 16 6 C -0.08 -0.59 10.24 36.01 0.37 -0.22 16 7 C -0.21 -2.24 5.83 -104.42 -0.61 -2.85 16 8 C 0.14 1.20 5.93 -4.97 -0.03 1.17 16 9 N -0.68 -6.68 6.21 -115.06 -0.71 -7.40 16 10 C 0.05 0.41 4.98 -3.82 -0.02 0.39 16 11 C 0.14 1.42 2.88 -67.93 -0.20 1.22 16 12 H 0.10 1.27 6.90 -51.93 -0.36 0.91 16 13 C -0.16 -1.27 9.17 37.16 0.34 -0.93 16 14 N -0.60 -7.57 2.48 -173.93 -0.43 -8.01 16 15 C 0.08 0.79 9.40 59.85 0.56 1.35 16 16 C 0.54 9.60 7.69 -10.98 -0.08 9.51 16 17 O -0.53 -11.22 15.19 5.55 0.08 -11.14 16 18 C -0.12 -2.31 4.71 36.01 0.17 -2.15 16 19 S -0.15 -3.74 18.55 -107.50 -1.99 -5.74 16 20 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 24 Si 0.86 22.15 27.74 -169.99 -4.71 17.44 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 34 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.04 0.29 7.65 -51.93 -0.40 -0.11 16 36 H 0.35 4.10 8.72 -39.29 -0.34 3.76 16 37 H 0.08 0.52 7.84 -51.93 -0.41 0.12 16 38 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 44 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 45 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 46 H 0.10 1.81 8.11 -51.92 -0.42 1.39 16 47 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -35.64 401.37 -7.64 -43.29 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.52 Total: 0.43 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 0.23 Total: -5.47 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.03 Total: -46.37 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.28 Total: -9.63 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.64 -7.64 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.455 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds