Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34335 * 126.44724 * 2 1 4 4 N 1.34470 * 107.66889 * 179.97438 * 3 2 1 5 5 C 1.30249 * 108.70609 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.62388 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47268 * 195.02602 * 6 5 4 8 8 C 1.53000 * 109.46606 * 75.02520 * 6 5 4 9 9 N 1.46901 * 109.47130 * 315.03071 * 6 5 4 10 10 C 1.46894 * 110.99870 * 204.99644 * 9 6 5 11 11 C 1.52997 * 109.46972 * 180.02562 * 10 9 6 12 12 H 1.09001 * 109.47289 * 295.00160 * 11 10 9 13 13 C 1.53006 * 109.47127 * 175.00207 * 11 10 9 14 14 N 1.46500 * 109.47473 * 54.99834 * 11 10 9 15 15 C 1.46502 * 119.99711 * 60.00297 * 14 11 10 16 16 C 1.34769 * 120.00163 * 240.00131 * 14 11 10 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 11 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 11 19 19 S 1.81011 * 109.47088 * 180.02562 * 18 16 14 20 20 C 1.76199 * 100.00086 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00021 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99709 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00387 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47070 * 89.99742 * 24 22 20 26 26 H 1.48498 * 109.47140 * 210.00222 * 24 22 20 27 27 H 1.48500 * 109.46663 * 329.99897 * 24 22 20 28 28 O 1.33963 * 108.76066 * 0.22938 * 5 4 3 29 29 H 1.08993 * 109.47147 * 90.02636 * 1 2 3 30 30 H 1.08998 * 109.47125 * 210.02421 * 1 2 3 31 31 H 1.09001 * 109.47015 * 330.02269 * 1 2 3 32 32 H 1.08001 * 126.16187 * 359.94505 * 3 2 1 33 33 H 1.09002 * 109.47019 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.47950 * 300.00416 * 8 6 5 35 35 H 1.09005 * 109.47238 * 60.00412 * 8 6 5 36 36 H 1.00900 * 110.99766 * 328.95164 * 9 6 5 37 37 H 1.08993 * 109.47095 * 59.99880 * 10 9 6 38 38 H 1.09002 * 109.47061 * 299.99977 * 10 9 6 39 39 H 1.09001 * 109.47002 * 299.99574 * 13 11 10 40 40 H 1.08993 * 109.46955 * 60.00011 * 13 11 10 41 41 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 42 42 H 1.08993 * 109.47565 * 90.00263 * 15 14 11 43 43 H 1.09007 * 109.46761 * 210.00296 * 15 14 11 44 44 H 1.09006 * 109.47241 * 329.99804 * 15 14 11 45 45 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 46 46 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 47 47 H 0.97004 * 120.00015 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0015 6 6 4.8004 -1.5341 0.0018 7 1 4.5164 -2.5523 -0.2639 8 6 5.4323 -1.5279 1.3952 9 7 5.7696 -1.0247 -0.9776 10 6 6.6586 -2.0967 -1.4450 11 6 7.6519 -1.5289 -2.4607 12 1 7.1135 -1.1937 -3.3472 13 6 8.6559 -2.6145 -2.8539 14 7 8.3654 -0.3963 -1.8655 15 6 9.1685 -0.5906 -0.6557 16 6 8.2830 0.8243 -2.4308 17 8 7.6178 0.9853 -3.4321 18 6 9.0165 1.9895 -1.8181 19 16 8.7096 3.4792 -2.7995 20 6 9.6582 4.6490 -1.8850 21 1 10.1984 4.3355 -1.0039 22 6 9.7102 5.9735 -2.2963 23 7 10.4185 6.8475 -1.6128 24 14 8.7753 6.5160 -3.8198 25 1 7.4083 6.9489 -3.4337 26 1 9.4901 7.6479 -4.4623 27 1 8.6843 5.3822 -4.7745 28 8 2.3075 -1.0840 -0.0036 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9822 2.1112 -0.0008 33 1 6.3178 -2.1636 1.3954 34 1 5.7164 -0.5098 1.6610 35 1 4.7132 -1.9059 2.1220 36 1 5.3008 -0.5801 -1.7526 37 1 6.0657 -2.8811 -1.9154 38 1 7.2037 -2.5121 -0.5974 39 1 9.1944 -2.9496 -1.9674 40 1 8.1251 -3.4570 -3.2968 41 1 9.3633 -2.2101 -3.5779 42 1 10.1891 -0.8516 -0.9351 43 1 9.1757 0.3304 -0.0726 44 1 8.7380 -1.3949 -0.0591 45 1 8.6623 2.1468 -0.7994 46 1 10.0857 1.7782 -1.8026 47 1 10.4546 7.7734 -1.9000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -7.420370 kcal Electronic energy + Delta-G solvation = -27737.114675 eV Core-core repulsion = 23855.324510 eV Total energy + Delta-G solvation = -3881.790165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.51660 -39.70654 -37.53735 -35.67976 -34.77189 -32.98841 -32.34965 -32.11504 -30.14076 -28.65045 -27.16376 -26.68209 -25.55202 -25.45138 -23.54342 -21.98046 -21.44578 -20.70154 -19.07175 -17.61104 -17.45606 -16.96569 -16.88942 -16.09468 -15.64715 -15.46593 -15.06851 -14.86178 -14.47460 -14.37480 -13.95473 -13.78157 -13.56587 -13.42720 -13.19457 -13.08450 -12.78687 -12.70728 -12.67960 -12.56292 -12.40846 -12.35750 -12.00844 -11.93804 -11.66820 -11.49949 -11.37305 -11.16723 -10.95110 -10.93296 -10.53711 -10.46609 -9.77345 -9.28445 -8.91566 -8.88517 -8.70371 -8.39454 -8.35866 -6.79431 -6.20452 -3.90085 1.20335 2.29862 2.56743 2.85392 3.15545 3.31149 3.40423 3.57655 3.69592 3.76435 3.86180 4.41373 4.49816 4.59038 4.63853 4.80593 4.83059 4.88646 4.95920 5.02537 5.07216 5.12649 5.18804 5.19207 5.23488 5.26010 5.30681 5.38870 5.45478 5.50510 5.54516 5.60503 5.66448 5.81507 5.83277 5.91668 5.98574 6.01685 6.03472 6.16399 6.19073 6.63093 6.78523 7.08305 7.63209 7.65593 8.02960 8.50665 8.65354 9.26400 10.88996 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.003272 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.851134 B = 8555.963837 C =10572.117023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.054 4.054 3 C -0.039 4.039 4 N -0.445 5.445 5 C 0.173 3.827 6 C 0.191 3.809 7 H 0.066 0.934 8 C -0.135 4.135 9 N -0.661 5.661 10 C 0.048 3.952 11 C 0.139 3.861 12 H 0.100 0.900 13 C -0.158 4.158 14 N -0.601 5.601 15 C 0.086 3.914 16 C 0.541 3.459 17 O -0.526 6.526 18 C -0.117 4.117 19 S -0.145 6.145 20 C -0.517 4.517 21 H 0.087 0.913 22 C 0.095 3.905 23 N -0.883 5.883 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.235 1.235 28 O -0.206 6.206 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.354 0.646 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -23.591 5.428 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C -0.178 4.178 4 N -0.173 5.173 5 C -0.034 4.034 6 C 0.080 3.920 7 H 0.084 0.916 8 C -0.194 4.194 9 N -0.296 5.296 10 C -0.082 4.082 11 C 0.035 3.965 12 H 0.118 0.882 13 C -0.217 4.217 14 N -0.336 5.336 15 C -0.058 4.058 16 C 0.329 3.671 17 O -0.402 6.402 18 C -0.268 4.268 19 S 0.081 5.919 20 C -0.664 4.664 21 H 0.105 0.895 22 C -0.114 4.114 23 N -0.520 5.520 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.159 1.159 28 O -0.093 6.093 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.201 0.799 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.174 0.826 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.339 -22.621 4.450 27.149 hybrid contribution -0.757 -0.459 0.208 0.909 sum -15.096 -23.080 4.657 27.969 Atomic orbital electron populations 1.20256 0.83964 1.04282 1.03783 1.23497 0.94989 0.84665 1.07556 1.23247 0.87811 1.00542 1.06218 1.70528 1.22524 1.08768 1.15458 1.26236 0.83925 0.90683 1.02556 1.19758 0.83144 0.92739 0.96317 0.91595 1.21805 1.00422 1.04214 0.92919 1.60434 1.21258 1.29091 1.18772 1.22484 0.94854 0.92263 0.98593 1.20962 0.92467 0.86680 0.96416 0.88243 1.22082 0.99518 0.98068 1.01987 1.47532 1.49949 1.07887 1.28202 1.21657 0.94241 1.02940 0.86916 1.20152 0.80455 0.82952 0.83562 1.90655 1.40921 1.83374 1.25208 1.23271 1.02740 0.96791 1.03949 1.84743 1.67558 1.00887 1.38695 1.22331 1.34000 0.94986 1.15107 0.89471 1.24704 0.94427 0.95380 0.96840 1.69948 1.39428 1.03475 1.39168 0.86732 0.80524 0.80435 0.84140 1.19268 1.20093 1.15945 1.84356 1.17868 1.36817 1.70276 0.89821 0.90506 0.88897 0.79855 0.91174 0.90456 0.92362 0.82584 0.94135 0.90198 0.92171 0.91728 0.91692 0.93229 0.90711 0.91492 0.88469 0.88920 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 36.00 0.38 -0.01 16 2 C -0.05 -0.56 7.39 -35.69 -0.26 -0.83 16 3 C -0.04 -0.48 11.80 -17.77 -0.21 -0.69 16 4 N -0.44 -6.62 11.28 -11.10 -0.13 -6.75 16 5 C 0.17 2.18 6.84 -12.95 -0.09 2.10 16 6 C 0.19 1.92 3.16 -68.86 -0.22 1.70 16 7 H 0.07 0.54 7.80 -51.93 -0.40 0.13 16 8 C -0.14 -1.20 9.40 37.16 0.35 -0.86 16 9 N -0.66 -7.55 6.01 -107.96 -0.65 -8.19 16 10 C 0.05 0.43 4.73 -3.83 -0.02 0.41 16 11 C 0.14 1.55 2.88 -67.93 -0.20 1.35 16 12 H 0.10 1.35 6.90 -51.93 -0.36 1.00 16 13 C -0.16 -1.35 9.19 37.16 0.34 -1.01 16 14 N -0.60 -8.16 2.48 -173.93 -0.43 -8.60 16 15 C 0.09 0.92 9.30 59.85 0.56 1.47 16 16 C 0.54 10.14 7.69 -10.99 -0.08 10.06 16 17 O -0.53 -11.68 15.19 5.56 0.08 -11.60 16 18 C -0.12 -2.41 4.71 36.01 0.17 -2.24 16 19 S -0.15 -3.84 18.55 -107.50 -1.99 -5.83 16 20 C -0.52 -15.34 10.04 30.94 0.31 -15.03 16 21 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 22 C 0.09 2.84 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -27.30 13.97 55.49 0.78 -26.52 16 24 Si 0.86 22.46 27.74 -169.99 -4.71 17.75 16 25 H -0.27 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.24 -6.17 6.74 56.52 0.38 -5.79 16 28 O -0.21 -2.45 10.78 5.36 0.06 -2.39 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.07 0.50 7.45 -51.93 -0.39 0.12 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.35 4.84 8.35 -39.29 -0.33 4.51 16 37 H 0.04 0.30 8.05 -51.93 -0.42 -0.12 16 38 H 0.08 0.60 6.17 -51.93 -0.32 0.28 16 39 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.87 6.44 -51.92 -0.33 0.54 16 44 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 45 H 0.10 1.94 7.40 -51.92 -0.38 1.56 16 46 H 0.09 1.79 8.11 -51.92 -0.42 1.37 16 47 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -36.88 400.42 -7.51 -44.39 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.48 Total: 2.55 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.93 Total: -0.84 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.43 Total: -50.06 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.14 Total: -13.99 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.88 -7.51 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.971 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds