Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34327 * 126.44422 * 2 1 4 4 N 1.34480 * 107.66530 * 179.72220 * 3 2 1 5 5 C 1.30259 * 108.69921 * 0.42472 * 4 3 2 6 6 C 1.50700 * 125.61528 * 179.83904 * 5 4 3 7 7 H 1.09000 * 109.46988 * 164.68603 * 6 5 4 8 8 C 1.52995 * 109.46965 * 284.68855 * 6 5 4 9 9 N 1.46901 * 109.47408 * 44.68932 * 6 5 4 10 10 C 1.46895 * 111.00453 * 154.99699 * 9 6 5 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.47153 * 65.00034 * 11 10 9 13 13 C 1.53000 * 109.47060 * 185.00353 * 11 10 9 14 14 N 1.46500 * 109.47007 * 305.00123 * 11 10 9 15 15 C 1.46497 * 119.99968 * 299.99987 * 14 11 10 16 16 C 1.34774 * 119.99744 * 119.99814 * 14 11 10 17 17 O 1.21283 * 120.00281 * 0.02562 * 16 14 11 18 18 C 1.50699 * 119.99876 * 179.97438 * 16 14 11 19 19 S 1.80997 * 109.47293 * 180.02562 * 18 16 14 20 20 C 1.76204 * 100.00122 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00052 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00084 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99694 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00149 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47018 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47016 * 119.99979 * 24 22 20 27 27 H 1.48500 * 109.47312 * 240.00205 * 24 22 20 28 28 O 1.33964 * 108.76395 * 359.56857 * 5 4 3 29 29 H 1.08996 * 109.47192 * 270.03242 * 1 2 3 30 30 H 1.09006 * 109.47050 * 30.02661 * 1 2 3 31 31 H 1.08994 * 109.47672 * 150.02562 * 1 2 3 32 32 H 1.07998 * 126.16737 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47232 * 300.00071 * 8 6 5 34 34 H 1.08999 * 109.47390 * 60.00592 * 8 6 5 35 35 H 1.09007 * 109.46881 * 179.97438 * 8 6 5 36 36 H 1.00905 * 111.00077 * 31.04431 * 9 6 5 37 37 H 1.09004 * 109.46787 * 59.99736 * 10 9 6 38 38 H 1.09002 * 109.47059 * 300.00387 * 10 9 6 39 39 H 1.09004 * 109.46724 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47194 * 299.99650 * 13 11 10 41 41 H 1.08992 * 109.47399 * 59.99823 * 13 11 10 42 42 H 1.08998 * 109.47466 * 90.00240 * 15 14 11 43 43 H 1.09002 * 109.47260 * 210.00281 * 15 14 11 44 44 H 1.09000 * 109.47562 * 329.99730 * 15 14 11 45 45 H 1.08999 * 109.47401 * 300.00089 * 18 16 14 46 46 H 1.09001 * 109.47492 * 59.99837 * 18 16 14 47 47 H 0.96995 * 119.99536 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5764 -0.6549 0.0008 6 6 4.8003 -1.5342 0.0014 7 1 4.5162 -2.5522 0.2676 8 6 5.4327 -1.5289 -1.3917 9 7 5.7692 -1.0243 0.9809 10 6 6.6579 -2.0960 1.4494 11 6 7.6501 -1.5279 2.4661 12 1 7.1106 -1.1928 3.3520 13 6 8.6539 -2.6132 2.8603 14 7 8.3639 -0.3952 1.8715 15 6 9.1682 -0.5893 0.6626 16 6 8.2806 0.8255 2.4367 17 8 7.6150 0.9861 3.4378 18 6 9.0153 1.9906 1.8254 19 16 8.7079 3.4799 2.8071 20 6 9.6569 4.6500 1.8932 21 1 10.1982 4.3366 1.0128 22 6 9.7097 5.9743 2.3055 23 7 9.0512 6.3559 3.3795 24 14 10.7163 7.2146 1.3372 25 1 11.3567 6.5376 0.1809 26 1 9.8273 8.2979 0.8457 27 1 11.7646 7.7944 2.2147 28 8 2.3074 -1.0841 0.0006 29 1 -0.3633 0.0006 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9823 2.1112 -0.0004 33 1 4.7139 -1.9072 -2.1185 34 1 5.7170 -0.5108 -1.6579 35 1 6.3183 -2.1645 -1.3911 36 1 5.3001 -0.5792 1.7555 37 1 7.2033 -2.5119 0.6022 38 1 6.0648 -2.8801 1.9200 39 1 9.3605 -2.2085 3.5850 40 1 8.1228 -3.4560 3.3027 41 1 9.1933 -2.9482 1.9745 42 1 8.5467 -0.4247 -0.2176 43 1 9.9968 0.1189 0.6598 44 1 9.5596 -1.6065 0.6459 45 1 10.0845 1.7792 1.8118 46 1 8.6631 2.1479 0.8060 47 1 9.0878 7.2815 3.6674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -7.322804 kcal Electronic energy + Delta-G solvation = -27676.484142 eV Core-core repulsion = 23794.698208 eV Total energy + Delta-G solvation = -3881.785934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.47294 -39.59563 -37.45488 -35.60136 -34.72637 -32.92571 -32.33299 -32.05288 -30.08547 -28.50402 -27.11835 -26.63517 -25.45695 -25.33667 -23.49470 -21.92323 -21.35572 -20.65570 -18.97653 -17.59893 -17.40246 -16.91845 -16.77597 -16.03239 -15.59714 -15.31908 -15.00613 -14.72271 -14.43806 -14.34240 -13.96676 -13.75770 -13.55450 -13.39543 -13.12353 -12.95213 -12.80677 -12.64272 -12.53786 -12.48048 -12.33646 -12.15302 -12.03263 -11.79750 -11.58711 -11.44389 -11.32343 -11.00266 -10.92557 -10.86052 -10.66517 -10.48994 -9.68987 -9.15824 -8.98151 -8.84181 -8.64803 -8.27938 -8.08488 -6.36991 -6.12419 -3.80809 1.24585 2.34143 2.61310 3.08957 3.27379 3.29575 3.33466 3.38061 3.73375 3.81189 3.92052 4.29851 4.54085 4.65719 4.67917 4.85665 4.92220 5.01038 5.06200 5.11314 5.16568 5.22561 5.23228 5.26221 5.28005 5.29502 5.37032 5.45962 5.56224 5.59449 5.63132 5.70443 5.73306 5.85543 5.93807 5.98932 6.05028 6.07840 6.12849 6.20697 6.31853 6.69441 6.87810 7.14655 7.67738 7.69043 7.76981 8.45024 8.79082 9.33047 10.95123 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.003081 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.040327 B = 9086.428922 C =11045.517000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.055 4.055 3 C -0.039 4.039 4 N -0.444 5.444 5 C 0.173 3.827 6 C 0.191 3.809 7 H 0.066 0.934 8 C -0.135 4.135 9 N -0.661 5.661 10 C 0.050 3.950 11 C 0.139 3.861 12 H 0.100 0.900 13 C -0.159 4.159 14 N -0.603 5.603 15 C 0.084 3.916 16 C 0.542 3.458 17 O -0.524 6.524 18 C -0.146 4.146 19 S -0.063 6.063 20 C -0.530 4.530 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 O -0.206 6.206 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.354 0.646 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -21.996 -9.254 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C -0.178 4.178 4 N -0.172 5.172 5 C -0.034 4.034 6 C 0.080 3.920 7 H 0.084 0.916 8 C -0.193 4.193 9 N -0.295 5.295 10 C -0.080 4.080 11 C 0.034 3.966 12 H 0.118 0.882 13 C -0.218 4.218 14 N -0.338 5.338 15 C -0.060 4.060 16 C 0.330 3.670 17 O -0.399 6.399 18 C -0.297 4.297 19 S 0.163 5.837 20 C -0.679 4.679 21 H 0.090 0.910 22 C -0.137 4.137 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.207 1.207 28 O -0.093 6.093 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.202 0.798 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.175 0.825 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.242 -21.065 -8.126 25.223 hybrid contribution 0.135 -0.149 -1.313 1.328 sum -11.107 -21.215 -9.439 25.740 Atomic orbital electron populations 1.20254 0.83981 1.04241 1.03788 1.23489 0.94981 0.84675 1.07622 1.23251 0.87815 1.00544 1.06170 1.70542 1.22514 1.08749 1.15413 1.26244 0.83916 0.90695 1.02558 1.19752 0.83160 0.92725 0.96319 0.91635 1.21803 1.00410 1.04159 0.92964 1.60426 1.21226 1.29061 1.18813 1.22480 0.94874 0.92180 0.98489 1.20944 0.92502 0.86707 0.96414 0.88229 1.22095 0.99606 0.98170 1.01892 1.47558 1.49947 1.07960 1.28322 1.21670 0.95223 1.01664 0.87419 1.20177 0.80504 0.82836 0.83448 1.90659 1.40843 1.83311 1.25119 1.23511 1.02069 0.99255 1.04833 1.85355 1.66113 0.96194 1.35994 1.22911 1.34431 0.95683 1.14843 0.91007 1.24981 0.95799 0.97581 0.95301 1.70039 1.40071 1.17534 1.22773 0.86141 0.79490 0.80440 0.79562 1.19633 1.20635 1.20672 1.84354 1.17872 1.36807 1.70300 0.89810 0.88918 0.90540 0.79849 0.92408 0.90514 0.91169 0.82530 0.90333 0.94277 0.91661 0.91721 0.92194 0.92408 0.91150 0.91897 0.89695 0.89219 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 36.01 0.38 -0.03 16 2 C -0.05 -0.59 7.39 -35.69 -0.26 -0.85 16 3 C -0.04 -0.49 11.80 -17.77 -0.21 -0.70 16 4 N -0.44 -6.83 11.27 -11.10 -0.13 -6.95 16 5 C 0.17 2.26 6.84 -12.94 -0.09 2.17 16 6 C 0.19 2.00 3.16 -68.87 -0.22 1.79 16 7 H 0.07 0.56 7.80 -51.93 -0.40 0.16 16 8 C -0.14 -1.25 9.40 37.16 0.35 -0.90 16 9 N -0.66 -7.94 6.01 -107.96 -0.65 -8.59 16 10 C 0.05 0.47 4.78 -3.83 -0.02 0.45 16 11 C 0.14 1.63 2.88 -67.93 -0.20 1.44 16 12 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 13 C -0.16 -1.44 9.17 37.16 0.34 -1.09 16 14 N -0.60 -8.61 2.48 -173.94 -0.43 -9.04 16 15 C 0.08 0.93 9.40 59.85 0.56 1.50 16 16 C 0.54 10.70 7.69 -10.99 -0.08 10.62 16 17 O -0.52 -12.28 15.19 5.56 0.08 -12.20 16 18 C -0.15 -3.14 4.71 36.01 0.17 -2.97 16 19 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 20 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 21 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.85 13.22 55.49 0.73 -26.12 16 24 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 O -0.21 -2.53 10.78 5.36 0.06 -2.47 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 36 H 0.35 5.10 8.35 -39.29 -0.33 4.77 16 37 H 0.08 0.63 7.13 -51.93 -0.37 0.26 16 38 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 44 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 45 H 0.08 1.69 7.40 -51.92 -0.38 1.31 16 46 H 0.09 1.87 8.11 -51.92 -0.42 1.45 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -37.29 403.09 -8.01 -45.29 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.44 Total: 2.91 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.92 Total: -1.87 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.47 Total: -50.70 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.14 Total: -14.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.29 -8.01 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.971 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds