Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34043 * 126.77397 * 2 1 4 4 N 1.20925 * 111.56268 * 179.68112 * 3 2 1 5 5 C 1.30177 * 111.60781 * 0.48987 * 4 3 2 6 6 C 1.35449 * 126.77994 * 179.97438 * 2 1 3 7 7 C 1.50704 * 128.00684 * 359.97438 * 6 2 1 8 8 N 1.46897 * 109.47275 * 80.01616 * 7 6 2 9 9 C 1.46892 * 111.00050 * 179.36188 * 8 7 6 10 10 H 1.08995 * 109.47623 * 33.43534 * 9 8 7 11 11 C 1.53005 * 109.47338 * 153.43790 * 9 8 7 12 12 N 1.46501 * 109.46712 * 304.99920 * 11 9 8 13 13 C 1.34778 * 119.99795 * 179.97438 * 12 11 9 14 14 O 1.21285 * 119.99980 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00004 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47282 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00046 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00252 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00227 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99775 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47105 * 89.99845 * 21 19 17 23 23 H 1.48494 * 109.46914 * 209.99827 * 21 19 17 24 24 H 1.48497 * 109.46888 * 329.99903 * 21 19 17 25 25 C 1.53009 * 109.47048 * 273.43471 * 9 8 7 26 26 C 1.52997 * 109.47092 * 174.87275 * 25 9 8 27 27 C 1.52999 * 109.47128 * 294.87245 * 25 9 8 28 28 H 1.08994 * 109.47353 * 270.02321 * 1 2 3 29 29 H 1.09000 * 109.47249 * 30.03225 * 1 2 3 30 30 H 1.09002 * 109.46629 * 150.02872 * 1 2 3 31 31 H 1.08001 * 126.80157 * 179.79960 * 5 4 3 32 32 H 1.08997 * 109.46917 * 200.02050 * 7 6 2 33 33 H 1.09000 * 109.47043 * 320.01787 * 7 6 2 34 34 H 1.00900 * 110.99942 * 55.40128 * 8 7 6 35 35 H 1.08998 * 109.46746 * 64.99601 * 11 9 8 36 36 H 1.09000 * 109.46986 * 185.00015 * 11 9 8 37 37 H 0.96997 * 120.00473 * 359.97438 * 12 11 9 38 38 H 1.08993 * 109.47620 * 300.00199 * 15 13 12 39 39 H 1.09001 * 109.46954 * 60.00004 * 15 13 12 40 40 H 0.96999 * 120.00019 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.46805 * 54.87233 * 25 9 8 42 42 H 1.09004 * 109.47567 * 65.66653 * 26 25 9 43 43 H 1.08999 * 109.47177 * 185.66211 * 26 25 9 44 44 H 1.09000 * 109.47475 * 305.66790 * 26 25 9 45 45 H 1.09006 * 109.46983 * 60.00099 * 27 25 9 46 46 H 1.08999 * 109.46954 * 179.97438 * 27 25 9 47 47 H 1.09003 * 109.47268 * 299.99704 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3094 1.0737 0.0000 4 7 3.4763 0.7564 0.0063 5 6 3.6214 -0.5372 0.0009 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0017 8 7 1.5618 -2.9496 -1.3619 9 6 1.1845 -4.3687 -1.4020 10 1 0.6929 -4.6405 -0.4679 11 6 0.2270 -4.6090 -2.5710 12 7 -0.9186 -3.7029 -2.4580 13 6 -1.8974 -3.7354 -3.3840 14 8 -1.8295 -4.5145 -4.3111 15 6 -3.0761 -2.8037 -3.2676 16 16 -4.2080 -3.0868 -4.6513 17 6 -5.4548 -1.9003 -4.2744 18 1 -5.3596 -1.2768 -3.3977 19 6 -6.5590 -1.7663 -5.1047 20 7 -7.4903 -0.8795 -4.8234 21 14 -6.7234 -2.8443 -6.6214 22 1 -7.4518 -4.0890 -6.2674 23 1 -7.4767 -2.1113 -7.6704 24 1 -5.3724 -3.1896 -7.1321 25 6 2.4390 -5.2250 -1.5860 26 6 2.0630 -6.7056 -1.4999 27 6 3.0583 -4.9349 -2.9547 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 4.5529 -1.0838 0.0014 32 1 2.7590 -3.1428 0.3536 33 1 1.0675 -2.6826 0.6624 34 1 2.3123 -2.7565 -2.0081 35 1 0.7468 -4.4221 -3.5106 36 1 -0.1225 -5.6412 -2.5480 37 1 -0.9728 -3.0795 -1.7168 38 1 -3.5961 -2.9912 -2.3282 39 1 -2.7268 -1.7714 -3.2897 40 1 -8.2621 -0.7861 -5.4035 41 1 3.1594 -4.9869 -0.8034 42 1 1.4218 -6.9672 -2.3416 43 1 2.9679 -7.3126 -1.5301 44 1 1.5315 -6.8918 -0.5667 45 1 3.3262 -3.8800 -3.0160 46 1 3.9523 -5.5446 -3.0855 47 1 2.3379 -5.1730 -3.7373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753824828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 11.778561 kcal Electronic energy + Delta-G solvation = -27416.227540 eV Core-core repulsion = 23535.269904 eV Total energy + Delta-G solvation = -3880.957636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.19797 -39.71714 -38.42744 -35.69553 -34.01106 -33.41865 -32.91671 -32.41445 -30.05934 -28.56072 -27.69742 -27.42081 -25.67200 -25.41629 -23.47148 -22.82233 -21.05631 -20.42967 -19.75331 -17.88813 -17.79758 -17.38144 -16.79614 -16.29543 -15.94806 -15.60723 -15.08895 -14.96715 -14.85285 -14.58581 -14.24974 -14.03285 -13.61262 -13.57976 -13.45266 -13.27125 -13.07186 -12.97677 -12.78439 -12.70065 -12.41406 -12.29998 -12.10963 -11.74659 -11.59433 -11.32295 -11.24651 -11.21478 -10.98899 -10.89627 -10.63937 -10.56465 -9.83526 -9.48258 -9.44243 -8.98474 -8.86523 -8.76849 -8.46015 -6.88175 -6.26835 -3.97790 1.18227 1.89450 2.81641 2.83665 3.08358 3.33945 3.38471 3.52683 3.68616 3.82156 3.97130 4.29604 4.31670 4.35246 4.39269 4.48878 4.57761 4.72718 4.80610 4.89415 4.99712 5.02057 5.12439 5.13318 5.19134 5.23949 5.27394 5.28764 5.36721 5.47026 5.47440 5.52803 5.59401 5.62256 5.67556 5.78779 5.82105 5.82734 5.88505 5.96306 6.06721 6.50067 6.67406 6.92937 7.78870 7.96395 7.96714 8.43783 8.61652 9.19743 10.82439 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.002792 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.027019 B =10025.718648 C =12226.202464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.002 3.998 3 O 0.093 5.907 4 N -0.368 5.368 5 C -0.004 4.004 6 C -0.214 4.214 7 C 0.139 3.861 8 N -0.679 5.679 9 C 0.079 3.921 10 H 0.087 0.913 11 C 0.131 3.869 12 N -0.722 5.722 13 C 0.528 3.472 14 O -0.526 6.526 15 C -0.122 4.122 16 S -0.144 6.144 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.120 4.120 26 C -0.149 4.149 27 C -0.156 4.156 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.186 0.814 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.348 0.652 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.541 -5.482 13.620 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 O 0.029 5.971 4 N -0.073 5.073 5 C -0.183 4.183 6 C -0.218 4.218 7 C 0.010 3.990 8 N -0.312 5.312 9 C -0.031 4.031 10 H 0.105 0.895 11 C 0.006 3.994 12 N -0.376 5.376 13 C 0.314 3.686 14 O -0.401 6.401 15 C -0.273 4.273 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.140 4.140 26 C -0.207 4.207 27 C -0.213 4.213 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.203 0.797 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.689 -5.411 12.084 27.138 hybrid contribution 0.362 -0.251 0.916 1.017 sum 24.052 -5.662 13.000 27.921 Atomic orbital electron populations 1.20455 0.83508 1.05663 1.04083 1.24442 0.96415 0.85474 0.99906 1.84831 1.11434 1.33347 1.67445 1.73903 0.97331 1.16744 1.19276 1.24897 0.99600 0.90490 1.03317 1.20923 0.91941 0.97104 1.11840 1.20109 0.99903 0.87891 0.91121 1.60616 1.45831 1.17812 1.06907 1.21928 0.94884 0.86830 0.99477 0.89519 1.21373 0.86233 0.93804 0.97969 1.45733 1.21758 1.41017 1.29086 1.20250 0.83059 0.83683 0.81632 1.90691 1.77980 1.39199 1.32274 1.23254 0.97376 1.01588 1.05055 1.84790 1.22255 1.53067 1.31618 1.22324 1.06587 1.22597 1.15236 0.89406 1.24712 0.94332 0.94732 0.97546 1.69938 1.10000 1.33533 1.38349 0.86740 0.81162 0.80977 0.83016 1.19254 1.20012 1.15895 1.21707 0.97298 0.96573 0.98469 1.21861 1.01699 0.94733 1.02409 1.21974 1.01202 1.01323 0.96812 0.89394 0.89509 0.88046 0.79730 0.93729 0.89520 0.83137 0.91278 0.91292 0.76366 0.88720 0.88553 0.91982 0.91076 0.91810 0.92594 0.92469 0.92702 0.92398 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.30 36.00 0.37 -0.12 16 2 C 0.00 0.02 7.49 -35.30 -0.26 -0.25 16 3 O 0.09 0.99 11.20 17.17 0.19 1.18 16 4 N -0.37 -4.05 12.07 30.36 0.37 -3.69 16 5 C 0.00 -0.03 12.16 -17.06 -0.21 -0.24 16 6 C -0.21 -1.60 5.83 -104.42 -0.61 -2.21 16 7 C 0.14 0.77 5.81 -4.98 -0.03 0.74 16 8 N -0.68 -4.28 5.69 -107.99 -0.61 -4.89 16 9 C 0.08 0.50 1.97 -67.71 -0.13 0.37 16 10 H 0.09 0.51 7.78 -51.93 -0.40 0.11 16 11 C 0.13 1.30 4.67 -4.04 -0.02 1.29 16 12 N -0.72 -8.61 5.39 -60.29 -0.32 -8.93 16 13 C 0.53 9.11 7.85 -10.99 -0.09 9.03 16 14 O -0.53 -11.18 15.86 5.55 0.09 -11.09 16 15 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -14.86 10.04 30.94 0.31 -14.54 16 18 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 21 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 C -0.12 -0.66 2.79 -90.62 -0.25 -0.92 16 26 C -0.15 -0.87 8.81 37.16 0.33 -0.54 16 27 C -0.16 -0.96 8.52 37.16 0.32 -0.64 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.04 0.21 7.46 -51.93 -0.39 -0.18 16 33 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.35 2.36 6.53 -39.29 -0.26 2.10 16 35 H 0.07 0.78 6.06 -51.93 -0.31 0.46 16 36 H 0.07 0.74 6.95 -51.93 -0.36 0.38 16 37 H 0.40 3.85 8.14 -40.82 -0.33 3.52 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 0.35 7.45 -51.93 -0.39 -0.03 16 42 H 0.06 0.44 6.97 -51.93 -0.36 0.07 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 0.33 6.43 -51.93 -0.33 -0.01 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.52 6.23 -51.93 -0.32 0.19 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -34.63 396.83 -7.65 -42.29 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.26 Total: 0.90 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.15 Total: -7.45 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.20 Total: -43.25 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.28 Total: -9.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.63 -7.65 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753824828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.067 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds