Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99841 * 2 1 4 4 C 1.50702 * 109.46895 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80768 * 90.02428 * 4 3 2 6 6 C 1.30945 * 117.36605 * 179.97438 * 5 4 3 7 7 C 1.50700 * 122.90326 * 180.02562 * 6 5 4 8 8 C 1.35657 * 114.19319 * 0.02562 * 6 5 4 9 9 C 1.46680 * 126.13117 * 179.97438 * 8 6 5 10 10 O 1.21680 * 120.00355 * 0.02562 * 9 8 6 11 11 N 1.34781 * 120.00061 * 179.97438 * 9 8 6 12 12 C 1.46493 * 120.00398 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47346 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47177 * 65.00353 * 13 12 11 15 15 N 1.46493 * 109.47542 * 305.00099 * 13 12 11 16 16 C 1.36936 * 120.00314 * 154.99721 * 15 13 12 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53006 * 109.47133 * 185.00123 * 13 12 11 25 25 C 1.52999 * 109.47148 * 180.02562 * 24 13 12 26 26 C 1.53003 * 109.47119 * 300.00294 * 24 13 12 27 27 S 1.70962 * 124.80384 * 270.29866 * 4 3 2 28 28 H 1.09001 * 109.47097 * 59.99922 * 1 2 3 29 29 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47590 * 300.00109 * 1 2 3 31 31 H 1.09001 * 109.47020 * 60.00522 * 3 2 1 32 32 H 1.09002 * 109.47253 * 299.99570 * 3 2 1 33 33 H 1.09001 * 109.47137 * 270.00073 * 7 6 5 34 34 H 1.09000 * 109.47254 * 29.99710 * 7 6 5 35 35 H 1.08997 * 109.47612 * 150.00137 * 7 6 5 36 36 H 0.96998 * 119.99643 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.46774 * 60.00205 * 12 11 9 38 38 H 1.09002 * 109.47338 * 300.00832 * 12 11 9 39 39 H 0.97000 * 120.00040 * 334.99853 * 15 13 12 40 40 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 41 41 H 1.08995 * 109.47185 * 60.00093 * 24 13 12 42 42 H 1.08995 * 109.47266 * 59.99819 * 25 24 13 43 43 H 1.09000 * 109.47204 * 179.97438 * 25 24 13 44 44 H 1.09003 * 109.47147 * 299.99964 * 25 24 13 45 45 H 1.08997 * 109.47066 * 59.99786 * 26 24 13 46 46 H 1.09000 * 109.47191 * 180.02562 * 26 24 13 47 47 H 1.09004 * 109.47044 * 299.99680 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1288 -1.0636 6 6 5.5430 1.0267 -0.8946 7 6 6.5152 0.9510 -2.0436 8 6 5.9333 0.9950 0.4043 9 6 7.3128 0.8854 0.8904 10 8 8.2333 0.8134 0.0979 11 7 7.5610 0.8654 2.2150 12 6 8.9387 0.7554 2.7006 13 6 8.9417 0.7543 4.2305 14 1 8.4355 -0.1400 4.5943 15 7 8.2428 1.9446 4.7212 16 6 7.6676 1.9374 5.9638 17 1 7.7295 1.0542 6.5824 18 6 7.0049 3.0652 6.4284 19 7 6.4473 3.0563 7.6207 20 14 6.8971 4.5924 5.3583 21 1 8.0600 5.4736 5.6349 22 1 6.9060 4.1958 3.9272 23 1 5.6399 5.3220 5.6619 24 6 10.3852 0.7652 4.7378 25 6 10.3882 0.7634 6.2677 26 6 11.1152 -0.4781 4.2254 27 16 4.4852 1.1019 1.4027 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.6689 -0.0918 -2.3214 34 1 6.1135 1.4986 -2.8961 35 1 7.4664 1.3912 -1.7444 36 1 6.8272 0.9231 2.8468 37 1 9.5210 1.6019 2.3364 38 1 9.3795 -0.1725 2.3361 39 1 8.1875 2.7379 4.1658 40 1 5.9808 3.8430 7.9438 41 1 10.8914 1.6593 4.3741 42 1 9.8822 -0.1310 6.6311 43 1 11.4165 0.7707 6.6291 44 1 9.8680 1.6489 6.6331 45 1 11.1130 -0.4772 3.1354 46 1 12.1434 -0.4705 4.5871 47 1 10.6090 -1.3723 4.5891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753843802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = -30.715383 kcal Electronic energy + Delta-G solvation = -27747.423011 eV Core-core repulsion = 23864.622699 eV Total energy + Delta-G solvation = -3882.800312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.45057 -39.25430 -38.10396 -37.37105 -34.10915 -33.18808 -32.56766 -30.92846 -29.26749 -29.02366 -27.48887 -26.37597 -26.25535 -23.79661 -22.97005 -22.14925 -21.11951 -19.93384 -19.29166 -18.18719 -17.72891 -16.95760 -16.81317 -16.16224 -15.80019 -15.63207 -15.27089 -15.12468 -14.31435 -14.24101 -14.08921 -13.88150 -13.60969 -13.12275 -13.09300 -12.96790 -12.70679 -12.58475 -12.52533 -12.38332 -12.20677 -11.77236 -11.67554 -11.39648 -11.31894 -11.14416 -10.93382 -10.67245 -10.32799 -10.24731 -10.18915 -10.05107 -10.00354 -9.73493 -9.62534 -9.53910 -9.02191 -8.98180 -8.78623 -7.39615 -5.86650 -3.23056 0.06146 1.03714 1.47179 2.25714 3.16468 3.21992 3.28637 3.33183 3.38581 3.40220 3.98648 4.49523 4.54142 4.83429 4.86286 4.92990 5.00760 5.02015 5.06691 5.10135 5.21250 5.33020 5.36098 5.54214 5.62281 5.63768 5.68498 5.70950 5.79216 5.85772 6.00434 6.13365 6.23230 6.25822 6.35567 6.43932 6.52904 6.55656 6.63338 6.74741 6.96175 7.30169 7.44414 7.62729 7.88972 8.22648 8.31483 9.09015 9.81375 10.00366 11.30828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.003653 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.729361 B = 7662.427696 C = 9367.248849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.043 3.957 5 N -0.461 5.461 6 C 0.141 3.859 7 C -0.087 4.087 8 C -0.293 4.293 9 C 0.593 3.407 10 O -0.531 6.531 11 N -0.710 5.710 12 C 0.111 3.889 13 C 0.174 3.826 14 H 0.063 0.937 15 N -0.747 5.747 16 C -0.243 4.243 17 H 0.096 0.904 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.875 3.125 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.291 1.291 24 C -0.108 4.108 25 C -0.140 4.140 26 C -0.150 4.150 27 S 0.213 5.787 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -5.276 -14.928 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.232 4.232 5 N -0.178 5.178 6 C 0.002 3.998 7 C -0.145 4.145 8 C -0.417 4.417 9 C 0.378 3.622 10 O -0.411 6.411 11 N -0.361 5.361 12 C -0.013 4.013 13 C 0.064 3.936 14 H 0.081 0.919 15 N -0.390 5.390 16 C -0.372 4.372 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.706 3.294 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.217 1.217 24 C -0.129 4.129 25 C -0.197 4.197 26 C -0.208 4.208 27 S 0.471 5.529 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.749 -5.523 -14.582 16.619 hybrid contribution -0.190 1.451 -0.940 1.739 sum -5.939 -4.072 -15.522 17.111 Atomic orbital electron populations 1.22818 0.79856 1.03391 1.00425 1.87964 1.20425 1.26117 1.95548 1.20832 0.84278 0.86225 1.02817 1.26825 1.00552 1.03647 0.92153 1.66016 1.04533 1.15788 1.31416 1.20624 0.89725 0.95717 0.93701 1.20639 0.97128 1.03435 0.93343 1.25691 0.98662 1.19913 0.97461 1.16648 0.85727 0.77002 0.82807 1.90750 1.44294 1.51066 1.54996 1.45952 1.10905 1.73286 1.05945 1.21881 0.81543 1.02040 0.95875 1.20551 0.92263 0.91880 0.88924 0.91860 1.42854 1.65670 1.12113 1.18395 1.19045 1.26727 1.00326 0.91125 0.88668 1.24632 1.00161 0.97483 0.96323 1.69688 1.40616 1.29616 1.17680 0.86702 0.77481 0.84864 0.80367 1.21079 1.20383 1.21745 1.21688 0.96760 0.97142 0.97352 1.21825 0.99617 1.03922 0.94317 1.21944 0.99904 0.98504 1.00404 1.84306 0.95940 1.63090 1.09568 0.93618 0.89055 0.93482 0.90398 0.89810 0.90177 0.90904 0.88094 0.75610 0.91486 0.90699 0.80533 0.93002 0.91936 0.93751 0.94925 0.89263 0.93049 0.93349 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.17 10.69 -35.23 -0.38 -4.54 16 3 C 0.14 1.38 6.51 36.01 0.23 1.61 16 4 C 0.04 0.56 7.02 -13.29 -0.09 0.47 16 5 N -0.46 -6.67 10.50 -7.70 -0.08 -6.75 16 6 C 0.14 2.08 6.79 -83.89 -0.57 1.51 16 7 C -0.09 -1.10 9.69 36.01 0.35 -0.75 16 8 C -0.29 -4.49 6.48 -37.10 -0.24 -4.73 16 9 C 0.59 9.82 7.78 -12.85 -0.10 9.72 16 10 O -0.53 -9.52 14.27 5.21 0.07 -9.44 16 11 N -0.71 -11.52 5.38 -61.62 -0.33 -11.85 16 12 C 0.11 1.74 4.73 -4.05 -0.02 1.72 16 13 C 0.17 2.99 2.18 -67.93 -0.15 2.84 16 14 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 15 N -0.75 -15.63 4.24 -53.43 -0.23 -15.86 16 16 C -0.24 -6.07 8.05 -15.06 -0.12 -6.19 16 17 H 0.10 2.57 7.62 -52.49 -0.40 2.17 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -27.28 13.97 55.49 0.78 -26.50 16 20 Si 0.88 20.85 27.74 -169.99 -4.72 16.14 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.25 6.51 56.52 0.37 -5.88 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C -0.11 -1.72 2.69 -90.62 -0.24 -1.96 16 25 C -0.14 -2.45 8.26 37.16 0.31 -2.15 16 26 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 27 S 0.21 2.89 22.31 -107.50 -2.40 0.50 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.39 6.01 -51.93 -0.31 1.08 16 36 H 0.41 6.75 7.32 -40.82 -0.30 6.45 16 37 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 39 H 0.36 7.75 5.65 -40.82 -0.23 7.52 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 45 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -30.67 393.46 -7.98 -38.65 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.33 Total: 11.77 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 0.70 Total: 1.97 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.14 Total: -60.97 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.30 Total: -13.99 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.72 Total: 16.14 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.40 Total: 0.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.67 -7.98 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753843802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.935 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds