Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99841 * 2 1 4 4 C 1.50702 * 109.46895 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80768 * 90.02428 * 4 3 2 6 6 C 1.30945 * 117.36605 * 179.97438 * 5 4 3 7 7 C 1.50700 * 122.90326 * 180.02562 * 6 5 4 8 8 C 1.35657 * 114.19319 * 0.02562 * 6 5 4 9 9 C 1.46680 * 126.13117 * 179.97438 * 8 6 5 10 10 O 1.21680 * 120.00355 * 0.02562 * 9 8 6 11 11 N 1.34781 * 120.00061 * 179.97438 * 9 8 6 12 12 C 1.46493 * 120.00398 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47346 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47177 * 65.00353 * 13 12 11 15 15 N 1.46493 * 109.47542 * 305.00099 * 13 12 11 16 16 C 1.36936 * 120.00314 * 154.99721 * 15 13 12 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53006 * 109.47133 * 185.00123 * 13 12 11 25 25 C 1.52999 * 109.47148 * 180.02562 * 24 13 12 26 26 C 1.53003 * 109.47119 * 300.00294 * 24 13 12 27 27 S 1.70962 * 124.80384 * 270.29866 * 4 3 2 28 28 H 1.09001 * 109.47097 * 59.99922 * 1 2 3 29 29 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47590 * 300.00109 * 1 2 3 31 31 H 1.09001 * 109.47020 * 60.00522 * 3 2 1 32 32 H 1.09002 * 109.47253 * 299.99570 * 3 2 1 33 33 H 1.09001 * 109.47137 * 270.00073 * 7 6 5 34 34 H 1.09000 * 109.47254 * 29.99710 * 7 6 5 35 35 H 1.08997 * 109.47612 * 150.00137 * 7 6 5 36 36 H 0.96998 * 119.99643 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.46774 * 60.00205 * 12 11 9 38 38 H 1.09002 * 109.47338 * 300.00832 * 12 11 9 39 39 H 0.97000 * 120.00040 * 334.99853 * 15 13 12 40 40 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 41 41 H 1.08995 * 109.47185 * 60.00093 * 24 13 12 42 42 H 1.08995 * 109.47266 * 59.99819 * 25 24 13 43 43 H 1.09000 * 109.47204 * 179.97438 * 25 24 13 44 44 H 1.09003 * 109.47147 * 299.99964 * 25 24 13 45 45 H 1.08997 * 109.47066 * 59.99786 * 26 24 13 46 46 H 1.09000 * 109.47191 * 180.02562 * 26 24 13 47 47 H 1.09004 * 109.47044 * 299.99680 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1288 -1.0636 6 6 5.5430 1.0267 -0.8946 7 6 6.5152 0.9510 -2.0436 8 6 5.9333 0.9950 0.4043 9 6 7.3128 0.8854 0.8904 10 8 8.2333 0.8134 0.0979 11 7 7.5610 0.8654 2.2150 12 6 8.9387 0.7554 2.7006 13 6 8.9417 0.7543 4.2305 14 1 8.4355 -0.1400 4.5943 15 7 8.2428 1.9446 4.7212 16 6 7.6676 1.9374 5.9638 17 1 7.7295 1.0542 6.5824 18 6 7.0049 3.0652 6.4284 19 7 6.4473 3.0563 7.6207 20 14 6.8971 4.5924 5.3583 21 1 8.0600 5.4736 5.6349 22 1 6.9060 4.1958 3.9272 23 1 5.6399 5.3220 5.6619 24 6 10.3852 0.7652 4.7378 25 6 10.3882 0.7634 6.2677 26 6 11.1152 -0.4781 4.2254 27 16 4.4852 1.1019 1.4027 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.6689 -0.0918 -2.3214 34 1 6.1135 1.4986 -2.8961 35 1 7.4664 1.3912 -1.7444 36 1 6.8272 0.9231 2.8468 37 1 9.5210 1.6019 2.3364 38 1 9.3795 -0.1725 2.3361 39 1 8.1875 2.7379 4.1658 40 1 5.9808 3.8430 7.9438 41 1 10.8914 1.6593 4.3741 42 1 9.8822 -0.1310 6.6311 43 1 11.4165 0.7707 6.6291 44 1 9.8680 1.6489 6.6331 45 1 11.1130 -0.4772 3.1354 46 1 12.1434 -0.4705 4.5871 47 1 10.6090 -1.3723 4.5891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753843802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = -52.363072 kcal Electronic energy + Delta-G solvation = -27748.361725 eV Core-core repulsion = 23864.622699 eV Total energy + Delta-G solvation = -3883.739026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57607 -40.46418 -38.96823 -38.70136 -35.45388 -34.94821 -33.57549 -32.72965 -30.57922 -29.84854 -28.76945 -27.55957 -27.00074 -25.43277 -23.94640 -23.63180 -22.42444 -21.23243 -20.66601 -19.46479 -19.22984 -18.06271 -17.68288 -17.22839 -17.06512 -16.62929 -16.49481 -16.31552 -15.89705 -15.49411 -15.38598 -14.97714 -14.90975 -14.71013 -14.45034 -14.24643 -13.94653 -13.55970 -13.50528 -13.35765 -13.30314 -12.98637 -12.93624 -12.85312 -12.54048 -12.43966 -12.38748 -12.24757 -11.96827 -11.77311 -11.48788 -11.33237 -11.30730 -10.95675 -10.84098 -10.78812 -10.72683 -10.20926 -9.92921 -9.28199 -7.95061 -5.27382 -1.01647 -0.01451 0.40427 1.16675 1.38101 1.40775 1.46486 1.95444 2.00869 2.51109 2.53586 3.15580 3.36365 3.53514 3.66388 3.69185 3.81798 3.95176 4.13432 4.23379 4.27108 4.27439 4.41698 4.51137 4.56909 4.61271 4.62344 4.68444 4.69901 4.82779 4.87429 4.90688 4.95586 5.02428 5.14285 5.21103 5.25631 5.30931 5.44357 5.62406 5.77016 5.87535 5.99937 6.26653 6.28141 6.43237 6.94918 7.12787 7.86824 8.05438 9.25886 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.003653 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.729361 B = 7662.427696 C = 9367.248849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.135 3.865 4 C 0.053 3.947 5 N -0.477 5.477 6 C 0.140 3.860 7 C -0.083 4.083 8 C -0.319 4.319 9 C 0.595 3.405 10 O -0.549 6.549 11 N -0.712 5.712 12 C 0.118 3.882 13 C 0.174 3.826 14 H 0.058 0.942 15 N -0.747 5.747 16 C -0.204 4.204 17 H 0.070 0.930 18 C -0.053 4.053 19 N -0.980 5.980 20 Si 0.933 3.067 21 H -0.289 1.289 22 H -0.256 1.256 23 H -0.300 1.300 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.142 4.142 27 S 0.213 5.787 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.405 0.595 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.362 0.638 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -5.614 -17.049 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.055 3.945 4 C -0.222 4.222 5 N -0.194 5.194 6 C 0.001 3.999 7 C -0.142 4.142 8 C -0.443 4.443 9 C 0.381 3.619 10 O -0.430 6.430 11 N -0.363 5.363 12 C -0.005 4.005 13 C 0.066 3.934 14 H 0.076 0.924 15 N -0.390 5.390 16 C -0.335 4.335 17 H 0.087 0.913 18 C -0.245 4.245 19 N -0.631 5.631 20 Si 0.762 3.238 21 H -0.216 1.216 22 H -0.181 1.181 23 H -0.227 1.227 24 C -0.125 4.125 25 C -0.192 4.192 26 C -0.200 4.200 27 S 0.472 5.528 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.195 0.805 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.697 -5.892 -16.749 18.647 hybrid contribution -0.220 1.434 -0.297 1.481 sum -5.918 -4.458 -17.046 18.587 Atomic orbital electron populations 1.23036 0.77851 1.04417 1.01733 1.87914 1.22620 1.26520 1.95828 1.21063 0.82239 0.86475 1.04710 1.27463 1.01939 1.01304 0.91446 1.66106 1.04465 1.16923 1.31880 1.20969 0.90255 0.94644 0.94061 1.20647 0.96225 1.04067 0.93270 1.25606 0.98606 1.22049 0.98087 1.16761 0.86129 0.76470 0.82570 1.90735 1.44990 1.51961 1.55268 1.45972 1.10946 1.73408 1.05964 1.21826 0.81567 1.02970 0.94173 1.20699 0.92651 0.89948 0.90145 0.92412 1.42834 1.65810 1.13437 1.16944 1.18932 1.24201 0.98693 0.91705 0.91255 1.25213 1.01349 1.00425 0.97503 1.69842 1.43094 1.30257 1.19902 0.85745 0.76573 0.81435 0.79997 1.21584 1.18098 1.22700 1.21590 0.95931 0.98965 0.95988 1.21723 1.00185 1.01560 0.95703 1.21865 1.00207 0.96710 1.01201 1.84265 0.95523 1.63227 1.09808 0.92234 0.88272 0.92225 0.88204 0.88165 0.89366 0.89326 0.89200 0.75890 0.91444 0.88923 0.80484 0.93675 0.91848 0.94269 0.92933 0.93336 0.91688 0.91948 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.16 10.69 -148.98 -1.59 -9.75 16 3 C 0.13 2.39 6.51 71.24 0.46 2.85 16 4 C 0.05 1.31 7.02 88.46 0.62 1.93 16 5 N -0.48 -13.10 10.50 -178.28 -1.87 -14.97 16 6 C 0.14 3.97 6.79 42.09 0.29 4.25 16 7 C -0.08 -2.01 9.69 71.24 0.69 -1.32 16 8 C -0.32 -9.49 6.48 23.88 0.15 -9.33 16 9 C 0.59 19.04 7.78 86.45 0.67 19.72 16 10 O -0.55 -18.99 14.27 -4.29 -0.06 -19.06 16 11 N -0.71 -22.22 5.38 -467.10 -2.51 -24.73 16 12 C 0.12 3.48 4.73 86.38 0.41 3.89 16 13 C 0.17 5.76 2.18 44.99 0.10 5.86 16 14 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 15 N -0.75 -30.77 4.24 -322.95 -1.37 -32.14 16 16 C -0.20 -10.34 8.05 84.03 0.68 -9.67 16 17 H 0.07 3.85 7.62 -2.91 -0.02 3.83 16 18 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 19 N -0.98 -59.32 13.97 21.65 0.30 -59.02 16 20 Si 0.93 43.39 27.74 68.60 1.90 45.29 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.26 -10.82 6.51 99.48 0.65 -10.17 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 C -0.10 -3.11 2.69 -10.79 -0.03 -3.14 16 25 C -0.13 -4.64 8.26 71.98 0.59 -4.04 16 26 C -0.14 -3.31 8.84 71.98 0.64 -2.67 16 27 S 0.21 5.58 22.31 -56.49 -1.26 4.32 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.39 6.01 -2.39 -0.01 2.38 16 36 H 0.41 13.06 7.32 -92.71 -0.68 12.38 16 37 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.09 2.44 6.71 -2.39 -0.02 2.43 16 39 H 0.36 15.01 5.65 -92.71 -0.52 14.49 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 44 H 0.05 2.07 6.01 -2.39 -0.01 2.05 16 45 H 0.06 1.36 6.54 -2.39 -0.02 1.34 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.75 393.46 0.26 -66.50 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.27 Total: 36.15 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.99 Total: 7.42 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.45 Total: -130.87 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.65 Total: -28.81 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.29 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.26 Total: 4.32 kcal Total: -66.75 0.26 -66.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753843802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.133 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds