Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34328 * 126.44298 * 2 1 4 4 N 1.34482 * 107.67101 * 179.77356 * 3 2 1 5 5 C 1.30262 * 108.69576 * 0.42421 * 4 3 2 6 6 C 1.50693 * 125.61785 * 179.84035 * 5 4 3 7 7 H 1.09000 * 109.47305 * 164.69703 * 6 5 4 8 8 C 1.53003 * 109.46915 * 284.69339 * 6 5 4 9 9 N 1.46901 * 109.47182 * 44.69125 * 6 5 4 10 10 C 1.46905 * 110.99870 * 155.00014 * 9 6 5 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 6 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46559 * 305.00226 * 12 11 10 14 14 C 1.52995 * 109.47525 * 184.99971 * 12 11 10 15 15 N 1.46500 * 109.47046 * 64.99774 * 12 11 10 16 16 C 1.34779 * 120.00042 * 205.00495 * 15 12 11 17 17 O 1.21276 * 119.99621 * 359.97438 * 16 15 12 18 18 C 1.50700 * 120.00130 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.47322 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99955 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00597 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99923 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47247 * 120.00022 * 24 22 20 27 27 H 1.48508 * 109.47274 * 240.00112 * 24 22 20 28 28 O 1.33966 * 108.75984 * 359.57659 * 5 4 3 29 29 H 1.09000 * 109.46601 * 269.97240 * 1 2 3 30 30 H 1.08999 * 109.47283 * 29.96623 * 1 2 3 31 31 H 1.08990 * 109.47170 * 149.97231 * 1 2 3 32 32 H 1.08003 * 126.17081 * 0.03099 * 3 2 1 33 33 H 1.08996 * 109.47234 * 60.00392 * 8 6 5 34 34 H 1.09007 * 109.47106 * 180.02562 * 8 6 5 35 35 H 1.08993 * 109.47190 * 299.99987 * 8 6 5 36 36 H 1.00901 * 111.00067 * 278.95190 * 9 6 5 37 37 H 1.09001 * 109.46798 * 300.00327 * 10 9 6 38 38 H 1.08998 * 109.46961 * 60.00043 * 10 9 6 39 39 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 40 40 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 41 41 H 1.08995 * 109.47284 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.46886 * 299.99781 * 14 12 11 43 43 H 1.09005 * 109.47161 * 59.99516 * 14 12 11 44 44 H 0.96995 * 120.00031 * 25.00151 * 15 12 11 45 45 H 1.09003 * 109.47200 * 300.00282 * 18 16 15 46 46 H 1.09000 * 109.47091 * 59.99943 * 18 16 15 47 47 H 0.97001 * 119.99740 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5765 -0.6548 -0.0010 6 6 4.8004 -1.5340 -0.0017 7 1 4.5164 -2.5522 0.2640 8 6 5.4319 -1.5278 -1.3953 9 7 5.7698 -1.0246 0.9774 10 6 6.6590 -2.0966 1.4446 11 6 7.6518 -1.5291 2.4610 12 6 8.5783 -2.6454 2.9471 13 1 7.9807 -3.4696 3.3367 14 6 9.4881 -2.1077 4.0533 15 7 9.3973 -3.1216 1.8296 16 6 9.8990 -4.3724 1.8469 17 8 9.6730 -5.1035 2.7878 18 6 10.7410 -4.8625 0.6971 19 16 11.2619 -6.5667 1.0141 20 6 12.2023 -6.8753 -0.4436 21 1 12.3049 -6.1048 -1.1933 22 6 12.8104 -8.1092 -0.6288 23 7 12.6841 -9.0489 0.2842 24 14 13.8068 -8.4367 -2.1746 25 1 13.7933 -7.2283 -3.0376 26 1 15.2066 -8.7633 -1.8013 27 1 13.2123 -9.5791 -2.9141 28 8 2.3075 -1.0840 -0.0007 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3633 -0.8896 -0.5142 32 1 1.9822 2.1113 0.0005 33 1 5.7159 -0.5096 -1.6610 34 1 6.3170 -2.1642 -1.3960 35 1 4.7126 -1.9057 -2.1218 36 1 6.3000 -0.2559 0.5951 37 1 6.0662 -2.8810 1.9151 38 1 7.2038 -2.5120 0.5968 39 1 8.2446 -0.7445 1.9908 40 1 7.1066 -1.1140 3.3087 41 1 10.1484 -2.9028 4.3993 42 1 10.0857 -1.2835 3.6637 43 1 8.8788 -1.7533 4.8848 44 1 9.5783 -2.5368 1.0773 45 1 10.1570 -4.8257 -0.2225 46 1 11.6208 -4.2272 0.5944 47 1 13.1088 -9.9113 0.1545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753951083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -28.468816 kcal Electronic energy + Delta-G solvation = -26284.317622 eV Core-core repulsion = 22401.614729 eV Total energy + Delta-G solvation = -3882.702894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.59997 -39.48990 -37.88366 -35.90908 -34.89282 -33.07600 -32.43843 -32.04646 -30.84536 -28.56311 -27.81018 -27.15575 -25.49413 -24.15239 -23.07736 -21.94874 -21.43837 -20.86689 -20.29406 -17.86558 -17.57086 -17.00846 -16.52689 -16.19153 -15.83784 -15.37267 -15.10200 -14.87792 -14.81290 -14.46203 -14.19007 -13.89484 -13.72592 -13.58570 -13.41259 -13.23925 -13.16233 -12.81101 -12.77491 -12.65821 -12.46710 -12.05818 -11.91833 -11.82279 -11.55568 -11.54862 -11.22193 -11.08172 -11.02871 -10.92967 -10.75870 -10.74839 -9.81177 -9.36790 -9.08913 -9.03703 -8.94309 -8.77786 -8.23701 -6.50670 -6.22839 -3.93130 1.13239 2.20669 2.43087 3.04369 3.10989 3.20497 3.27619 3.32421 3.68637 3.73201 3.79818 4.19425 4.38405 4.49392 4.58197 4.67121 4.69367 4.80846 4.88417 4.93132 4.94780 5.08472 5.12452 5.17427 5.22054 5.23747 5.33014 5.40033 5.43886 5.53890 5.59784 5.66303 5.67536 5.74433 5.76128 5.84053 5.88096 6.03239 6.07206 6.13000 6.23919 6.49592 6.69985 6.95228 7.49049 7.58849 7.73216 8.34344 8.63652 9.22713 10.84612 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.001866 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.565477 B =15005.150478 C =16251.176034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.044 4.044 4 N -0.468 5.468 5 C 0.206 3.794 6 C 0.183 3.817 7 H 0.106 0.894 8 C -0.178 4.178 9 N -0.676 5.676 10 C 0.058 3.942 11 C -0.122 4.122 12 C 0.144 3.856 13 H 0.089 0.911 14 C -0.163 4.163 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 O -0.202 6.202 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.353 0.647 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.396 0.604 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 21.903 -0.867 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C -0.183 4.183 4 N -0.196 5.196 5 C -0.002 4.002 6 C 0.071 3.929 7 H 0.124 0.876 8 C -0.237 4.237 9 N -0.308 5.308 10 C -0.070 4.070 11 C -0.160 4.160 12 C 0.039 3.961 13 H 0.107 0.893 14 C -0.221 4.221 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 O -0.089 6.089 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.198 0.802 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.133 20.752 1.320 29.648 hybrid contribution 0.873 0.547 -3.198 3.360 sum -20.260 21.299 -1.878 29.456 Atomic orbital electron populations 1.20257 0.84074 1.04290 1.03794 1.23455 0.95011 0.84677 1.07628 1.23092 0.87984 1.00248 1.06947 1.70360 1.22656 1.09143 1.17491 1.26112 0.83871 0.90257 1.00005 1.19633 0.85492 0.95248 0.92503 0.87626 1.22482 1.01883 1.03620 0.95763 1.60150 1.19785 1.10922 1.39992 1.22079 0.93827 0.93363 0.97769 1.21845 0.96551 0.97692 0.99926 1.20856 0.91590 0.96496 0.87186 0.89312 1.22164 1.00238 1.01512 0.98197 1.46142 1.54510 1.15036 1.23242 1.20288 0.79238 0.80838 0.87796 1.90699 1.57775 1.55087 1.35561 1.23536 1.01406 1.06545 0.98967 1.85401 1.65312 1.03280 1.29378 1.22909 1.36968 1.02234 1.06241 0.90915 1.24995 0.96143 0.95047 0.97425 1.70031 1.42116 1.04587 1.33517 0.86123 0.79428 0.78349 0.81614 1.19639 1.20553 1.20581 1.84375 1.17832 1.36704 1.69984 0.89811 0.89047 0.90387 0.80188 0.91137 0.90502 0.91370 0.82698 0.90421 0.94012 0.91323 0.89512 0.91653 0.92625 0.91873 0.77081 0.89402 0.89320 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.09 16 2 C -0.05 -0.47 7.39 -35.69 -0.26 -0.73 16 3 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.47 -5.23 11.28 -11.10 -0.13 -5.36 16 5 C 0.21 2.17 7.19 -12.95 -0.09 2.07 16 6 C 0.18 1.56 3.13 -68.87 -0.22 1.34 16 7 H 0.11 0.86 7.80 -51.93 -0.40 0.46 16 8 C -0.18 -1.29 9.14 37.16 0.34 -0.95 16 9 N -0.68 -5.64 6.22 -107.95 -0.67 -6.32 16 10 C 0.06 0.48 5.37 -3.82 -0.02 0.46 16 11 C -0.12 -0.96 5.01 -26.73 -0.13 -1.10 16 12 C 0.14 1.57 2.57 -67.93 -0.17 1.39 16 13 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 14 C -0.16 -1.74 9.48 37.15 0.35 -1.39 16 15 N -0.73 -9.07 4.53 -53.81 -0.24 -9.31 16 16 C 0.53 9.53 7.81 -10.98 -0.09 9.44 16 17 O -0.52 -11.41 15.52 5.56 0.09 -11.33 16 18 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 24 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 O -0.20 -2.16 10.77 5.37 0.06 -2.10 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.08 0.52 7.46 -51.92 -0.39 0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.35 2.76 8.47 -39.29 -0.33 2.43 16 37 H 0.08 0.71 8.06 -51.93 -0.42 0.30 16 38 H 0.04 0.35 7.05 -51.93 -0.37 -0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 45 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 46 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 410.35 15.07 6.18 6.18 Total: -1.00 -35.91 410.35 -8.62 -44.53 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.69 Total: 2.21 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 0.29 Total: -5.66 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.31 Total: -46.30 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.14 Total: -13.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.91 -8.62 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753951083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.062 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds