Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34328 * 126.44298 * 2 1 4 4 N 1.34482 * 107.67101 * 179.77356 * 3 2 1 5 5 C 1.30262 * 108.69576 * 0.42421 * 4 3 2 6 6 C 1.50693 * 125.61785 * 179.84035 * 5 4 3 7 7 H 1.09000 * 109.47305 * 164.69703 * 6 5 4 8 8 C 1.53003 * 109.46915 * 284.69339 * 6 5 4 9 9 N 1.46901 * 109.47182 * 44.69125 * 6 5 4 10 10 C 1.46905 * 110.99870 * 155.00014 * 9 6 5 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 6 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46559 * 305.00226 * 12 11 10 14 14 C 1.52995 * 109.47525 * 184.99971 * 12 11 10 15 15 N 1.46500 * 109.47046 * 64.99774 * 12 11 10 16 16 C 1.34779 * 120.00042 * 205.00495 * 15 12 11 17 17 O 1.21276 * 119.99621 * 359.97438 * 16 15 12 18 18 C 1.50700 * 120.00130 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.47322 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99955 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00597 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99923 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47247 * 120.00022 * 24 22 20 27 27 H 1.48508 * 109.47274 * 240.00112 * 24 22 20 28 28 O 1.33966 * 108.75984 * 359.57659 * 5 4 3 29 29 H 1.09000 * 109.46601 * 269.97240 * 1 2 3 30 30 H 1.08999 * 109.47283 * 29.96623 * 1 2 3 31 31 H 1.08990 * 109.47170 * 149.97231 * 1 2 3 32 32 H 1.08003 * 126.17081 * 0.03099 * 3 2 1 33 33 H 1.08996 * 109.47234 * 60.00392 * 8 6 5 34 34 H 1.09007 * 109.47106 * 180.02562 * 8 6 5 35 35 H 1.08993 * 109.47190 * 299.99987 * 8 6 5 36 36 H 1.00901 * 111.00067 * 278.95190 * 9 6 5 37 37 H 1.09001 * 109.46798 * 300.00327 * 10 9 6 38 38 H 1.08998 * 109.46961 * 60.00043 * 10 9 6 39 39 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 40 40 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 41 41 H 1.08995 * 109.47284 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.46886 * 299.99781 * 14 12 11 43 43 H 1.09005 * 109.47161 * 59.99516 * 14 12 11 44 44 H 0.96995 * 120.00031 * 25.00151 * 15 12 11 45 45 H 1.09003 * 109.47200 * 300.00282 * 18 16 15 46 46 H 1.09000 * 109.47091 * 59.99943 * 18 16 15 47 47 H 0.97001 * 119.99740 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5765 -0.6548 -0.0010 6 6 4.8004 -1.5340 -0.0017 7 1 4.5164 -2.5522 0.2640 8 6 5.4319 -1.5278 -1.3953 9 7 5.7698 -1.0246 0.9774 10 6 6.6590 -2.0966 1.4446 11 6 7.6518 -1.5291 2.4610 12 6 8.5783 -2.6454 2.9471 13 1 7.9807 -3.4696 3.3367 14 6 9.4881 -2.1077 4.0533 15 7 9.3973 -3.1216 1.8296 16 6 9.8990 -4.3724 1.8469 17 8 9.6730 -5.1035 2.7878 18 6 10.7410 -4.8625 0.6971 19 16 11.2619 -6.5667 1.0141 20 6 12.2023 -6.8753 -0.4436 21 1 12.3049 -6.1048 -1.1933 22 6 12.8104 -8.1092 -0.6288 23 7 12.6841 -9.0489 0.2842 24 14 13.8068 -8.4367 -2.1746 25 1 13.7933 -7.2283 -3.0376 26 1 15.2066 -8.7633 -1.8013 27 1 13.2123 -9.5791 -2.9141 28 8 2.3075 -1.0840 -0.0007 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3633 -0.8896 -0.5142 32 1 1.9822 2.1113 0.0005 33 1 5.7159 -0.5096 -1.6610 34 1 6.3170 -2.1642 -1.3960 35 1 4.7126 -1.9057 -2.1218 36 1 6.3000 -0.2559 0.5951 37 1 6.0662 -2.8810 1.9151 38 1 7.2038 -2.5120 0.5968 39 1 8.2446 -0.7445 1.9908 40 1 7.1066 -1.1140 3.3087 41 1 10.1484 -2.9028 4.3993 42 1 10.0857 -1.2835 3.6637 43 1 8.8788 -1.7533 4.8848 44 1 9.5783 -2.5368 1.0773 45 1 10.1570 -4.8257 -0.2225 46 1 11.6208 -4.2272 0.5944 47 1 13.1088 -9.9113 0.1545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753951083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = -56.498167 kcal Electronic energy + Delta-G solvation = -26285.533066 eV Core-core repulsion = 22401.614729 eV Total energy + Delta-G solvation = -3883.918337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.29474 -40.78138 -38.66916 -36.93996 -35.62683 -34.58051 -33.82740 -32.95058 -31.70769 -29.95513 -28.52645 -27.70339 -27.65214 -24.82119 -23.86210 -22.63963 -22.34811 -21.70468 -21.44523 -19.82728 -18.27756 -17.89879 -17.71422 -17.31326 -16.87749 -16.60086 -16.28738 -16.11570 -15.99509 -15.63764 -15.11488 -14.80919 -14.70792 -14.43321 -14.34513 -14.13600 -14.02770 -13.90168 -13.68069 -13.26728 -13.21851 -13.15169 -13.11131 -12.95324 -12.91228 -12.56838 -12.45181 -12.32860 -12.29915 -11.99311 -11.78940 -11.68381 -11.47345 -11.15579 -10.86913 -10.25317 -10.09246 -9.66185 -9.47270 -8.65355 -8.34473 -6.11916 0.46008 1.28429 1.41180 1.48221 1.58094 1.59077 1.67279 1.73867 2.26797 2.35305 2.99795 3.05545 3.13569 3.33883 3.78712 3.87549 3.93734 4.00698 4.03666 4.10071 4.12817 4.22664 4.32394 4.40985 4.44626 4.52234 4.54151 4.57570 4.66641 4.68035 4.73232 4.77820 4.83824 4.97805 5.04417 5.09697 5.14707 5.19787 5.21595 5.34670 5.38747 5.42609 5.61118 5.83573 6.20422 6.34479 6.57901 6.78685 7.07160 7.31976 8.74911 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.001866 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.565477 B =15005.150478 C =16251.176034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.057 4.057 3 C -0.064 4.064 4 N -0.489 5.489 5 C 0.189 3.811 6 C 0.183 3.817 7 H 0.104 0.896 8 C -0.170 4.170 9 N -0.677 5.677 10 C 0.062 3.938 11 C -0.107 4.107 12 C 0.145 3.855 13 H 0.065 0.935 14 C -0.159 4.159 15 N -0.707 5.707 16 C 0.535 3.465 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 O -0.220 6.220 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.204 0.796 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.358 0.642 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.414 0.586 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 24.418 -2.514 32.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.202 4.202 4 N -0.218 5.218 5 C -0.019 4.019 6 C 0.071 3.929 7 H 0.122 0.878 8 C -0.229 4.229 9 N -0.311 5.311 10 C -0.066 4.066 11 C -0.145 4.145 12 C 0.040 3.960 13 H 0.083 0.917 14 C -0.217 4.217 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.444 6.444 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.200 1.200 28 O -0.107 6.107 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.178 0.822 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.251 0.749 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.657 23.336 -0.346 31.839 hybrid contribution 0.900 -0.095 -2.629 2.780 sum -20.758 23.241 -2.975 31.303 Atomic orbital electron populations 1.20476 0.81224 1.05660 1.04914 1.24263 0.96588 0.84018 1.06092 1.23571 0.87510 1.01635 1.07445 1.70327 1.23910 1.09520 1.18036 1.26470 0.84332 0.90488 1.00598 1.19686 0.85138 0.94839 0.93188 0.87767 1.22409 1.01944 1.03631 0.94938 1.60086 1.19744 1.10992 1.40235 1.22003 0.93718 0.93116 0.97806 1.21717 0.95918 0.96696 1.00181 1.20968 0.91587 0.96720 0.86763 0.91675 1.22126 1.00049 1.00843 0.98711 1.45884 1.52868 1.13180 1.24160 1.20016 0.79168 0.82138 0.86606 1.90691 1.59764 1.56865 1.37110 1.23382 1.02712 1.01437 1.00584 1.85589 1.66173 1.10065 1.30701 1.23241 1.36943 1.02834 1.06277 0.89924 1.26120 0.97274 0.94688 1.01093 1.70193 1.43423 1.05210 1.35961 0.84918 0.77428 0.78680 0.76996 1.17996 1.19985 1.19984 1.84379 1.18255 1.37808 1.70259 0.88658 0.86682 0.89986 0.77869 0.91280 0.89781 0.91469 0.82188 0.91717 0.93787 0.89135 0.88796 0.94995 0.90852 0.89986 0.74866 0.87256 0.87430 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.43 71.24 0.74 0.30 16 2 C -0.06 -0.91 7.39 24.79 0.18 -0.73 16 3 C -0.06 -1.09 11.80 83.39 0.98 -0.11 16 4 N -0.49 -10.59 11.28 -303.83 -3.43 -14.01 16 5 C 0.19 3.91 7.19 88.34 0.64 4.54 16 6 C 0.18 3.00 3.13 44.17 0.14 3.13 16 7 H 0.10 1.69 7.80 -2.39 -0.02 1.67 16 8 C -0.17 -2.28 9.14 71.98 0.66 -1.62 16 9 N -0.68 -10.35 6.22 -495.45 -3.08 -13.43 16 10 C 0.06 0.92 5.37 86.30 0.46 1.38 16 11 C -0.11 -1.42 5.01 30.59 0.15 -1.27 16 12 C 0.14 2.94 2.57 44.99 0.12 3.05 16 13 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 14 C -0.16 -3.16 9.48 71.98 0.68 -2.48 16 15 N -0.71 -16.19 4.53 -442.54 -2.00 -18.19 16 16 C 0.53 18.94 7.81 87.66 0.68 19.62 16 17 O -0.57 -25.72 15.52 -3.02 -0.05 -25.76 16 18 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 19 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 20 C -0.55 -30.93 9.50 67.96 0.65 -30.28 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 24 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 O -0.22 -4.62 10.77 -3.68 -0.04 -4.66 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 34 H 0.08 0.99 7.46 -2.38 -0.02 0.97 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.36 4.89 8.47 -89.69 -0.76 4.13 16 37 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.04 0.63 7.05 -2.39 -0.02 0.62 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.41 6.59 8.60 -92.71 -0.80 5.79 16 45 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 46 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 47 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -81.26 410.35 -1.03 -82.29 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.58 Total: 21.32 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 6.99 Total: -7.81 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -8.22 Total: -101.26 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.09 Total: -30.43 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -81.26 -1.03 -82.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753951083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.787 kcal (2) G-P(sol) polarization free energy of solvation -81.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds