Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34331 * 126.44471 * 2 1 4 4 N 1.34475 * 107.66711 * 180.02562 * 3 2 1 5 5 C 1.30252 * 108.70194 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61512 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46930 * 195.02080 * 6 5 4 8 8 C 1.53000 * 109.47484 * 75.02360 * 6 5 4 9 9 N 1.46900 * 109.47457 * 315.01905 * 6 5 4 10 10 C 1.46894 * 111.00559 * 205.00488 * 9 6 5 11 11 C 1.52997 * 109.47515 * 180.02562 * 10 9 6 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99895 * 12 11 10 14 14 C 1.53002 * 109.46776 * 174.99999 * 12 11 10 15 15 N 1.46506 * 109.46901 * 294.99627 * 12 11 10 16 16 C 1.34777 * 119.99688 * 155.00173 * 15 12 11 17 17 O 1.21279 * 119.99974 * 0.02562 * 16 15 12 18 18 C 1.50698 * 119.99799 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.46963 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99954 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99931 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00100 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47212 * 59.99182 * 24 22 20 26 26 H 1.48500 * 109.47022 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46859 * 299.99375 * 24 22 20 28 28 O 1.33959 * 108.76122 * 0.22695 * 5 4 3 29 29 H 1.09000 * 109.47238 * 89.97781 * 1 2 3 30 30 H 1.09001 * 109.47226 * 209.97516 * 1 2 3 31 31 H 1.09001 * 109.46898 * 329.98152 * 1 2 3 32 32 H 1.08003 * 126.16641 * 0.05298 * 3 2 1 33 33 H 1.09001 * 109.47164 * 179.97438 * 8 6 5 34 34 H 1.08998 * 109.46626 * 299.99909 * 8 6 5 35 35 H 1.09002 * 109.47075 * 59.99868 * 8 6 5 36 36 H 1.00899 * 110.99900 * 81.04539 * 9 6 5 37 37 H 1.09002 * 109.47104 * 59.99767 * 10 9 6 38 38 H 1.08998 * 109.46828 * 300.00600 * 10 9 6 39 39 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 40 40 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 41 41 H 1.09004 * 109.46964 * 179.97438 * 14 12 11 42 42 H 1.08994 * 109.47359 * 299.99610 * 14 12 11 43 43 H 1.09000 * 109.47312 * 60.00037 * 14 12 11 44 44 H 0.96993 * 119.99992 * 335.00033 * 15 12 11 45 45 H 1.08995 * 109.47366 * 299.99979 * 18 16 15 46 46 H 1.08996 * 109.47113 * 60.00496 * 18 16 15 47 47 H 0.97003 * 120.00173 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5764 -0.6548 -0.0015 6 6 4.8004 -1.5340 -0.0029 7 1 4.5162 -2.5520 -0.2698 8 6 5.4331 -1.5298 1.3902 9 7 5.7691 -1.0234 -0.9822 10 6 6.6578 -2.0947 -1.4515 11 6 7.6505 -1.5256 -2.4671 12 6 8.5757 -2.6416 -2.9564 13 1 7.9773 -3.4643 -3.3476 14 6 9.4855 -2.1019 -4.0618 15 7 9.3950 -3.1212 -1.8404 16 6 9.8957 -4.3723 -1.8610 17 8 9.6685 -5.1009 -2.8035 18 6 10.7379 -4.8658 -0.7129 19 16 11.2559 -6.5702 -1.0336 20 6 12.1958 -6.8836 0.4234 21 1 12.2997 -6.1148 1.1748 22 6 12.8027 -8.1185 0.6056 23 7 12.6757 -9.0557 -0.3100 24 14 13.7986 -8.4510 2.1506 25 1 12.9270 -8.3001 3.3433 26 1 14.3379 -9.8338 2.1038 27 1 14.9222 -7.4835 2.2330 28 8 2.3075 -1.0839 -0.0065 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 1.9822 2.1113 0.0008 33 1 6.3181 -2.1661 1.3892 34 1 5.7173 -0.5119 1.6570 35 1 4.7144 -1.9088 2.1168 36 1 6.2995 -0.2552 -0.5993 37 1 6.0647 -2.8785 -1.9226 38 1 7.2033 -2.5113 -0.6048 39 1 8.2436 -0.7420 -1.9956 40 1 7.1053 -1.1088 -3.3139 41 1 10.1449 -2.8968 -4.4101 42 1 8.8761 -1.7451 -4.8921 43 1 10.0839 -1.2792 -3.6706 44 1 9.5770 -2.5383 -1.0869 45 1 11.6182 -4.2316 -0.6091 46 1 10.1543 -4.8309 0.2070 47 1 13.0995 -9.9189 -0.1826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753951085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = -56.353078 kcal Electronic energy + Delta-G solvation = -26285.447842 eV Core-core repulsion = 22401.535796 eV Total energy + Delta-G solvation = -3883.912046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -44.29649 -40.78078 -38.66974 -36.93967 -35.62818 -34.57609 -33.82760 -32.95080 -31.70771 -29.95475 -28.52647 -27.70309 -27.64438 -24.82231 -23.86183 -22.63965 -22.34839 -21.70502 -21.44571 -19.82165 -18.27688 -17.89797 -17.71765 -17.31125 -16.87015 -16.60107 -16.28716 -16.11435 -15.99315 -15.63619 -15.11729 -14.80721 -14.70749 -14.42881 -14.34534 -14.13506 -14.02758 -13.90117 -13.68095 -13.26611 -13.21831 -13.16035 -13.11084 -12.95282 -12.86147 -12.59661 -12.45128 -12.32969 -12.30019 -11.99488 -11.79669 -11.70985 -11.47344 -11.12222 -10.86881 -10.25900 -10.09251 -9.66239 -9.47285 -8.65150 -8.33675 -6.11500 0.46005 1.28331 1.43931 1.47866 1.57649 1.58421 1.67287 1.73649 2.27518 2.35360 3.00291 3.05538 3.13567 3.34164 3.78647 3.87571 3.93723 4.00704 4.03611 4.10098 4.12802 4.22606 4.32484 4.40978 4.44632 4.52254 4.54159 4.57550 4.66620 4.67998 4.73184 4.77813 4.83813 4.97794 5.04385 5.09673 5.14690 5.19758 5.21556 5.34643 5.38739 5.42243 5.61072 5.83587 6.20286 6.34475 6.57930 6.78674 7.07533 7.31985 8.75143 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.001866 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.792051 B =15002.455152 C =16248.828018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.057 4.057 3 C -0.064 4.064 4 N -0.489 5.489 5 C 0.189 3.811 6 C 0.183 3.817 7 H 0.104 0.896 8 C -0.170 4.170 9 N -0.677 5.677 10 C 0.062 3.938 11 C -0.107 4.107 12 C 0.145 3.855 13 H 0.065 0.935 14 C -0.159 4.159 15 N -0.707 5.707 16 C 0.535 3.465 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 O -0.220 6.220 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.205 0.795 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.358 0.642 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.031 0.969 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.414 0.586 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.364 24.415 2.580 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.201 4.201 4 N -0.218 5.218 5 C -0.019 4.019 6 C 0.072 3.928 7 H 0.122 0.878 8 C -0.229 4.229 9 N -0.311 5.311 10 C -0.066 4.066 11 C -0.145 4.145 12 C 0.040 3.960 13 H 0.083 0.917 14 C -0.217 4.217 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.444 6.444 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.187 1.187 28 O -0.107 6.107 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.221 0.779 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.178 0.822 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.251 0.749 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.622 23.329 0.410 31.811 hybrid contribution 0.899 -0.082 2.632 2.783 sum -20.722 23.247 3.043 31.291 Atomic orbital electron populations 1.20478 0.81224 1.05660 1.04913 1.24264 0.96588 0.84018 1.06098 1.23569 0.87506 1.01635 1.07440 1.70318 1.23919 1.09518 1.18048 1.26468 0.84334 0.90489 1.00592 1.19687 0.85140 0.94827 0.93194 0.87770 1.22409 1.01935 1.03631 0.94941 1.60080 1.19799 1.11030 1.40159 1.22002 0.93719 0.93119 0.97802 1.21718 0.95931 0.96693 1.00172 1.20969 0.91590 0.96679 0.86799 0.91673 1.22128 1.00052 1.00835 0.98715 1.45884 1.52874 1.13185 1.24149 1.20017 0.79170 0.82135 0.86609 1.90692 1.59743 1.57029 1.36972 1.23381 1.02715 1.01425 1.00601 1.85588 1.66280 1.09984 1.30645 1.23177 1.37143 1.02861 1.06292 0.89922 1.26116 0.97246 0.94686 1.01081 1.70181 1.43391 1.05242 1.35933 0.85023 0.78275 0.77553 0.77272 1.18641 1.20466 1.18685 1.84378 1.18258 1.37814 1.70251 0.88664 0.89982 0.86680 0.77866 0.89781 0.91276 0.91471 0.82187 0.91716 0.93796 0.89123 0.88803 0.94997 0.89987 0.90850 0.74864 0.87424 0.87261 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.43 71.24 0.74 0.30 16 2 C -0.06 -0.91 7.39 24.79 0.18 -0.73 16 3 C -0.06 -1.09 11.80 83.40 0.98 -0.11 16 4 N -0.49 -10.59 11.28 -303.84 -3.43 -14.02 16 5 C 0.19 3.91 7.19 88.34 0.64 4.55 16 6 C 0.18 3.00 3.13 44.17 0.14 3.14 16 7 H 0.10 1.69 7.80 -2.38 -0.02 1.67 16 8 C -0.17 -2.28 9.14 71.98 0.66 -1.62 16 9 N -0.68 -10.35 6.22 -495.45 -3.08 -13.43 16 10 C 0.06 0.92 5.37 86.30 0.46 1.39 16 11 C -0.11 -1.42 5.01 30.59 0.15 -1.27 16 12 C 0.14 2.94 2.57 44.99 0.12 3.05 16 13 H 0.07 1.69 7.58 -2.39 -0.02 1.68 16 14 C -0.16 -3.16 9.48 71.98 0.68 -2.48 16 15 N -0.71 -16.19 4.53 -442.53 -2.00 -18.19 16 16 C 0.53 18.94 7.81 87.66 0.68 19.63 16 17 O -0.57 -25.73 15.52 -3.03 -0.05 -25.77 16 18 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.55 16 20 C -0.55 -31.02 9.50 67.95 0.65 -30.38 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 24 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 O -0.22 -4.63 10.77 -3.63 -0.04 -4.67 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.08 0.99 7.45 -2.39 -0.02 0.97 16 34 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.36 4.89 8.47 -89.70 -0.76 4.13 16 37 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.04 0.63 7.05 -2.39 -0.02 0.62 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.41 6.59 8.60 -92.71 -0.80 5.79 16 45 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 46 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.18 410.36 -1.03 -82.21 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.58 Total: 21.54 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 6.99 Total: -7.87 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -8.23 Total: -101.27 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.09 Total: -30.44 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.18 -1.03 -82.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753951085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.856 kcal (2) G-P(sol) polarization free energy of solvation -81.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds