Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34331 * 126.44234 * 2 1 4 4 N 1.34477 * 107.66842 * 179.76519 * 3 2 1 5 5 C 1.30254 * 108.69963 * 0.42598 * 4 3 2 6 6 C 1.50698 * 125.61795 * 179.84025 * 5 4 3 7 7 H 1.08999 * 109.47461 * 164.69167 * 6 5 4 8 8 C 1.53005 * 109.46941 * 284.68987 * 6 5 4 9 9 N 1.46896 * 109.47533 * 44.68817 * 6 5 4 10 10 C 1.46898 * 111.00146 * 155.00194 * 9 6 5 11 11 C 1.52999 * 109.47103 * 179.97438 * 10 9 6 12 12 C 1.52999 * 109.47283 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46751 * 55.00473 * 12 11 10 14 14 C 1.52997 * 109.47284 * 175.00170 * 12 11 10 15 15 N 1.46499 * 109.47481 * 295.00693 * 12 11 10 16 16 C 1.34777 * 120.00199 * 154.99940 * 15 12 11 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 12 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 12 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47506 * 89.99666 * 24 22 20 26 26 H 1.48498 * 109.47217 * 210.00061 * 24 22 20 27 27 H 1.48502 * 109.46767 * 329.99807 * 24 22 20 28 28 O 1.33966 * 108.75878 * 359.57033 * 5 4 3 29 29 H 1.09002 * 109.46948 * 269.97229 * 1 2 3 30 30 H 1.09003 * 109.47256 * 29.97265 * 1 2 3 31 31 H 1.08997 * 109.47211 * 149.97506 * 1 2 3 32 32 H 1.08006 * 126.16517 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47298 * 60.00191 * 8 6 5 34 34 H 1.09001 * 109.47134 * 180.02562 * 8 6 5 35 35 H 1.09002 * 109.46638 * 300.00049 * 8 6 5 36 36 H 1.00900 * 110.99713 * 278.95865 * 9 6 5 37 37 H 1.08997 * 109.47108 * 59.99912 * 10 9 6 38 38 H 1.08998 * 109.46850 * 299.99823 * 10 9 6 39 39 H 1.09006 * 109.46883 * 59.99973 * 11 10 9 40 40 H 1.08995 * 109.47704 * 300.00226 * 11 10 9 41 41 H 1.09006 * 109.47495 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.47320 * 300.00586 * 14 12 11 43 43 H 1.08993 * 109.47268 * 60.00476 * 14 12 11 44 44 H 0.97000 * 119.99484 * 334.99037 * 15 12 11 45 45 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 46 46 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 47 47 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0013 7 1 4.5165 -2.5521 0.2645 8 6 5.4321 -1.5279 -1.3948 9 7 5.7698 -1.0244 0.9779 10 6 6.6589 -2.0963 1.4452 11 6 7.6525 -1.5284 2.4606 12 6 8.5781 -2.6449 2.9479 13 1 9.0561 -3.1203 2.0913 14 6 9.6494 -2.0546 3.8670 15 7 7.7964 -3.6405 3.6854 16 6 8.2362 -4.9113 3.7748 17 8 9.2790 -5.2308 3.2442 18 6 7.4289 -5.9368 4.5283 19 16 8.2725 -7.5368 4.4611 20 6 7.1436 -8.5172 5.3934 21 1 6.2492 -8.0700 5.8013 22 6 7.4034 -9.8644 5.6027 23 7 8.4928 -10.4099 5.1044 24 14 6.2063 -10.9040 6.5905 25 1 5.1948 -11.4957 5.6783 26 1 6.9467 -11.9908 7.2802 27 1 5.5255 -10.0519 7.5983 28 8 2.3074 -1.0839 -0.0004 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.9821 2.1113 0.0004 33 1 5.7161 -0.5097 -1.6607 34 1 6.3171 -2.1642 -1.3953 35 1 4.7128 -1.9059 -2.1213 36 1 6.2999 -0.2558 0.5955 37 1 7.2038 -2.5118 0.5975 38 1 6.0662 -2.8807 1.9158 39 1 7.1078 -1.1126 3.3084 40 1 8.2451 -0.7442 1.9897 41 1 10.3092 -2.8500 4.2137 42 1 10.2311 -1.3139 3.3182 43 1 9.1715 -1.5794 4.7235 44 1 6.9623 -3.3849 4.1095 45 1 7.3241 -5.6247 5.5674 46 1 6.4420 -6.0270 4.0747 47 1 8.6745 -11.3514 5.2509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753951086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = -28.412274 kcal Electronic energy + Delta-G solvation = -26330.043682 eV Core-core repulsion = 22447.343240 eV Total energy + Delta-G solvation = -3882.700442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.58964 -39.47249 -37.88668 -35.90452 -34.88233 -33.06716 -32.42435 -32.02911 -30.84368 -28.54640 -27.81649 -27.14940 -25.47818 -24.15009 -23.07231 -21.93750 -21.43703 -20.85248 -20.27931 -17.85767 -17.55617 -16.99527 -16.55267 -16.21679 -15.74781 -15.32997 -15.12623 -14.89457 -14.79956 -14.46295 -14.13401 -13.84947 -13.72590 -13.52029 -13.50404 -13.31192 -13.14673 -12.80817 -12.75830 -12.59682 -12.47817 -12.09460 -11.90833 -11.82772 -11.54275 -11.49215 -11.28705 -11.06011 -11.01976 -10.89822 -10.75047 -10.74208 -9.80733 -9.35467 -9.06685 -9.02712 -8.86649 -8.83899 -8.22809 -6.49213 -6.21296 -3.91594 1.14506 2.21859 2.43915 3.05984 3.12393 3.22496 3.28406 3.33167 3.69196 3.74954 3.79412 4.20998 4.39325 4.49748 4.58218 4.69884 4.72805 4.79993 4.83237 4.93677 4.96485 5.07708 5.13834 5.18801 5.22186 5.24304 5.35131 5.39280 5.41959 5.54332 5.61298 5.64324 5.67802 5.73211 5.76360 5.81945 5.90630 6.04043 6.08854 6.15791 6.23691 6.49388 6.71669 6.95273 7.49926 7.60087 7.75769 8.35709 8.65201 9.24112 10.86078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.002080 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.443088 B =13459.598878 C =15364.695558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.053 4.053 3 C -0.045 4.045 4 N -0.468 5.468 5 C 0.205 3.795 6 C 0.183 3.817 7 H 0.106 0.894 8 C -0.178 4.178 9 N -0.676 5.676 10 C 0.058 3.942 11 C -0.122 4.122 12 C 0.145 3.855 13 H 0.087 0.913 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 O -0.202 6.202 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.353 0.647 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 24.833 -11.172 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.183 4.183 4 N -0.197 5.197 5 C -0.003 4.003 6 C 0.071 3.929 7 H 0.124 0.876 8 C -0.237 4.237 9 N -0.308 5.308 10 C -0.070 4.070 11 C -0.161 4.161 12 C 0.039 3.961 13 H 0.105 0.895 14 C -0.221 4.221 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 O -0.088 6.088 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.198 0.802 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.231 0.769 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.989 24.395 -11.539 28.776 hybrid contribution -2.554 -0.557 0.762 2.723 sum -12.543 23.838 -10.778 29.013 Atomic orbital electron populations 1.20265 0.84065 1.04283 1.03851 1.23462 0.95023 0.84665 1.07489 1.23087 0.87978 1.00243 1.07038 1.70347 1.22672 1.09142 1.17502 1.26091 0.83884 0.90238 1.00088 1.19632 0.85505 0.95331 0.92434 0.87565 1.22479 1.01807 1.03555 0.95854 1.60137 1.19764 1.10903 1.40005 1.22080 0.93983 0.93429 0.97544 1.21845 0.96978 0.97738 0.99523 1.20840 0.91707 0.88319 0.95219 0.89472 1.22169 0.98910 1.01244 0.99817 1.46141 1.26510 1.09324 1.56915 1.20291 0.85826 0.82152 0.79843 1.90695 1.23454 1.79531 1.45606 1.23539 1.03193 1.01490 1.02251 1.85379 1.31325 0.95616 1.71073 1.22869 1.09751 0.96739 1.38958 0.90960 1.24993 0.95894 0.96915 0.95817 1.70020 1.24431 1.12995 1.42856 0.86173 0.80215 0.79454 0.79689 1.20286 1.20756 1.19703 1.84379 1.17820 1.36698 1.69936 0.89762 0.89051 0.90366 0.80188 0.91156 0.90613 0.91376 0.82727 0.94265 0.90213 0.90362 0.90426 0.91643 0.91964 0.92537 0.76853 0.89293 0.89335 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.01 0.38 0.06 16 2 C -0.05 -0.47 7.39 -35.69 -0.26 -0.73 16 3 C -0.04 -0.41 11.80 -17.77 -0.21 -0.62 16 4 N -0.47 -5.26 11.27 -11.10 -0.13 -5.38 16 5 C 0.20 2.18 7.19 -12.95 -0.09 2.09 16 6 C 0.18 1.56 3.13 -68.86 -0.22 1.35 16 7 H 0.11 0.89 7.80 -51.93 -0.40 0.48 16 8 C -0.18 -1.24 9.14 37.16 0.34 -0.90 16 9 N -0.68 -5.66 6.22 -107.96 -0.67 -6.33 16 10 C 0.06 0.48 5.37 -3.83 -0.02 0.46 16 11 C -0.12 -0.97 5.01 -26.73 -0.13 -1.11 16 12 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 13 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 14 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 15 N -0.73 -9.35 4.53 -53.81 -0.24 -9.60 16 16 C 0.53 9.66 7.81 -10.98 -0.09 9.58 16 17 O -0.52 -11.49 15.52 5.55 0.09 -11.40 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 O -0.20 -2.20 10.77 5.39 0.06 -2.14 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.07 0.48 7.45 -51.93 -0.39 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.35 2.74 8.47 -39.29 -0.33 2.40 16 37 H 0.04 0.33 7.44 -51.93 -0.39 -0.06 16 38 H 0.08 0.74 7.67 -51.93 -0.40 0.35 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.40 4.11 8.60 -40.82 -0.35 3.75 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 410.35 15.07 6.18 6.18 Total: -1.00 -35.97 410.35 -8.62 -44.59 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.69 Total: 2.57 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.29 Total: -5.62 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.31 Total: -46.74 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.14 Total: -13.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.97 -8.62 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753951086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.176 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds