Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34331 * 126.44234 * 2 1 4 4 N 1.34477 * 107.66842 * 179.76519 * 3 2 1 5 5 C 1.30254 * 108.69963 * 0.42598 * 4 3 2 6 6 C 1.50698 * 125.61795 * 179.84025 * 5 4 3 7 7 H 1.08999 * 109.47461 * 164.69167 * 6 5 4 8 8 C 1.53005 * 109.46941 * 284.68987 * 6 5 4 9 9 N 1.46896 * 109.47533 * 44.68817 * 6 5 4 10 10 C 1.46898 * 111.00146 * 155.00194 * 9 6 5 11 11 C 1.52999 * 109.47103 * 179.97438 * 10 9 6 12 12 C 1.52999 * 109.47283 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46751 * 55.00473 * 12 11 10 14 14 C 1.52997 * 109.47284 * 175.00170 * 12 11 10 15 15 N 1.46499 * 109.47481 * 295.00693 * 12 11 10 16 16 C 1.34777 * 120.00199 * 154.99940 * 15 12 11 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 12 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 12 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47506 * 89.99666 * 24 22 20 26 26 H 1.48498 * 109.47217 * 210.00061 * 24 22 20 27 27 H 1.48502 * 109.46767 * 329.99807 * 24 22 20 28 28 O 1.33966 * 108.75878 * 359.57033 * 5 4 3 29 29 H 1.09002 * 109.46948 * 269.97229 * 1 2 3 30 30 H 1.09003 * 109.47256 * 29.97265 * 1 2 3 31 31 H 1.08997 * 109.47211 * 149.97506 * 1 2 3 32 32 H 1.08006 * 126.16517 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47298 * 60.00191 * 8 6 5 34 34 H 1.09001 * 109.47134 * 180.02562 * 8 6 5 35 35 H 1.09002 * 109.46638 * 300.00049 * 8 6 5 36 36 H 1.00900 * 110.99713 * 278.95865 * 9 6 5 37 37 H 1.08997 * 109.47108 * 59.99912 * 10 9 6 38 38 H 1.08998 * 109.46850 * 299.99823 * 10 9 6 39 39 H 1.09006 * 109.46883 * 59.99973 * 11 10 9 40 40 H 1.08995 * 109.47704 * 300.00226 * 11 10 9 41 41 H 1.09006 * 109.47495 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.47320 * 300.00586 * 14 12 11 43 43 H 1.08993 * 109.47268 * 60.00476 * 14 12 11 44 44 H 0.97000 * 119.99484 * 334.99037 * 15 12 11 45 45 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 46 46 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 47 47 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0013 7 1 4.5165 -2.5521 0.2645 8 6 5.4321 -1.5279 -1.3948 9 7 5.7698 -1.0244 0.9779 10 6 6.6589 -2.0963 1.4452 11 6 7.6525 -1.5284 2.4606 12 6 8.5781 -2.6449 2.9479 13 1 9.0561 -3.1203 2.0913 14 6 9.6494 -2.0546 3.8670 15 7 7.7964 -3.6405 3.6854 16 6 8.2362 -4.9113 3.7748 17 8 9.2790 -5.2308 3.2442 18 6 7.4289 -5.9368 4.5283 19 16 8.2725 -7.5368 4.4611 20 6 7.1436 -8.5172 5.3934 21 1 6.2492 -8.0700 5.8013 22 6 7.4034 -9.8644 5.6027 23 7 8.4928 -10.4099 5.1044 24 14 6.2063 -10.9040 6.5905 25 1 5.1948 -11.4957 5.6783 26 1 6.9467 -11.9908 7.2802 27 1 5.5255 -10.0519 7.5983 28 8 2.3074 -1.0839 -0.0004 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.9821 2.1113 0.0004 33 1 5.7161 -0.5097 -1.6607 34 1 6.3171 -2.1642 -1.3953 35 1 4.7128 -1.9059 -2.1213 36 1 6.2999 -0.2558 0.5955 37 1 7.2038 -2.5118 0.5975 38 1 6.0662 -2.8807 1.9158 39 1 7.1078 -1.1126 3.3084 40 1 8.2451 -0.7442 1.9897 41 1 10.3092 -2.8500 4.2137 42 1 10.2311 -1.3139 3.3182 43 1 9.1715 -1.5794 4.7235 44 1 6.9623 -3.3849 4.1095 45 1 7.3241 -5.6247 5.5674 46 1 6.4420 -6.0270 4.0747 47 1 8.6745 -11.3514 5.2509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753951086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = -56.424232 kcal Electronic energy + Delta-G solvation = -26331.258371 eV Core-core repulsion = 22447.343240 eV Total energy + Delta-G solvation = -3883.915131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.29540 -40.78024 -38.67015 -36.94207 -35.62660 -34.58324 -33.83035 -32.94539 -31.71137 -29.96082 -28.52833 -27.70654 -27.65263 -24.82353 -23.85734 -22.63368 -22.36740 -21.65160 -21.47939 -19.82749 -18.28977 -17.88439 -17.71271 -17.36588 -16.87787 -16.52782 -16.35906 -16.09479 -15.97439 -15.63235 -15.12749 -14.73527 -14.69619 -14.50817 -14.31509 -14.22002 -14.05336 -13.86558 -13.68826 -13.30058 -13.21529 -13.16245 -13.08144 -12.95113 -12.89117 -12.59606 -12.44427 -12.31684 -12.25026 -12.09950 -11.75185 -11.69481 -11.47493 -11.14224 -10.87470 -10.26810 -10.07673 -9.66531 -9.48946 -8.65693 -8.34536 -6.12143 0.46124 1.27896 1.42063 1.47517 1.57985 1.58477 1.66385 1.73891 2.26781 2.35411 2.99410 3.05268 3.13138 3.33391 3.78906 3.88423 3.93972 4.01680 4.03609 4.10028 4.14091 4.14938 4.31434 4.40585 4.46423 4.52103 4.54752 4.57888 4.66403 4.67781 4.73060 4.76919 4.85537 4.93449 5.03191 5.09822 5.12212 5.20293 5.23647 5.34785 5.38794 5.41947 5.60952 5.83383 6.19941 6.33754 6.56558 6.78684 7.06803 7.30533 8.74559 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.002080 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.443088 B =13459.598878 C =15364.695558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.057 4.057 3 C -0.063 4.063 4 N -0.489 5.489 5 C 0.189 3.811 6 C 0.183 3.817 7 H 0.104 0.896 8 C -0.170 4.170 9 N -0.677 5.677 10 C 0.062 3.938 11 C -0.108 4.108 12 C 0.144 3.856 13 H 0.068 0.932 14 C -0.159 4.159 15 N -0.708 5.708 16 C 0.536 3.464 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 O -0.220 6.220 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.205 0.795 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.357 0.643 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.413 0.587 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 26.685 -10.650 32.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C -0.201 4.201 4 N -0.218 5.218 5 C -0.019 4.019 6 C 0.071 3.929 7 H 0.122 0.878 8 C -0.229 4.229 9 N -0.310 5.310 10 C -0.067 4.067 11 C -0.146 4.146 12 C 0.039 3.961 13 H 0.086 0.914 14 C -0.218 4.218 15 N -0.362 5.362 16 C 0.322 3.678 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.183 1.183 28 O -0.107 6.107 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.178 0.822 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.250 0.750 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.328 26.310 -11.015 31.072 hybrid contribution -1.881 -0.965 0.556 2.186 sum -14.209 25.345 -10.459 30.881 Atomic orbital electron populations 1.20477 0.81296 1.05652 1.04888 1.24252 0.96564 0.84033 1.06093 1.23568 0.87507 1.01615 1.07438 1.70319 1.23883 1.09507 1.18043 1.26461 0.84315 0.90477 1.00607 1.19691 0.85136 0.94869 0.93215 0.87751 1.22405 1.01894 1.03606 0.94971 1.60089 1.19692 1.10958 1.40226 1.22011 0.93842 0.93232 0.97610 1.21728 0.96451 0.96712 0.99699 1.20998 0.92298 0.88338 0.94442 0.91351 1.22132 0.98457 1.00680 1.00481 1.45928 1.26831 1.07724 1.55759 1.19987 0.85004 0.83424 0.79424 1.90686 1.25373 1.80536 1.47745 1.23390 1.03187 0.97696 1.03970 1.85544 1.34095 1.00995 1.71625 1.23200 1.09902 0.97349 1.38940 0.90044 1.26125 0.97829 0.98374 0.96880 1.70183 1.26638 1.13473 1.44423 0.84963 0.77556 0.77401 0.78120 1.19288 1.20280 1.18275 1.84382 1.18279 1.37817 1.70243 0.88728 0.86639 0.90024 0.77851 0.91279 0.89884 0.91375 0.82250 0.94293 0.91238 0.89536 0.88340 0.94987 0.89655 0.91134 0.74977 0.87549 0.87406 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.43 71.24 0.74 0.26 16 2 C -0.06 -0.93 7.39 24.79 0.18 -0.75 16 3 C -0.06 -1.10 11.80 83.39 0.98 -0.11 16 4 N -0.49 -10.60 11.27 -303.83 -3.43 -14.02 16 5 C 0.19 3.93 7.19 88.34 0.64 4.57 16 6 C 0.18 2.99 3.13 44.17 0.14 3.13 16 7 H 0.10 1.71 7.80 -2.39 -0.02 1.69 16 8 C -0.17 -2.23 9.14 71.98 0.66 -1.57 16 9 N -0.68 -10.35 6.22 -495.46 -3.08 -13.43 16 10 C 0.06 0.92 5.37 86.30 0.46 1.38 16 11 C -0.11 -1.44 5.01 30.59 0.15 -1.28 16 12 C 0.14 2.93 2.57 44.99 0.12 3.04 16 13 H 0.07 1.71 7.58 -2.39 -0.02 1.70 16 14 C -0.16 -3.15 9.48 71.98 0.68 -2.47 16 15 N -0.71 -17.04 4.53 -442.54 -2.00 -19.05 16 16 C 0.54 19.35 7.81 87.66 0.68 20.03 16 17 O -0.57 -25.74 15.52 -3.04 -0.05 -25.79 16 18 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 19 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 20 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 24 Si 1.00 43.75 29.55 68.60 2.03 45.77 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 28 O -0.22 -4.71 10.77 -3.63 -0.04 -4.75 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.08 0.96 7.45 -2.39 -0.02 0.94 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.36 4.94 8.47 -89.69 -0.76 4.18 16 37 H 0.04 0.59 7.44 -2.39 -0.02 0.58 16 38 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.41 7.52 8.60 -92.71 -0.80 6.72 16 45 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 46 H 0.11 3.83 8.14 -2.40 -0.02 3.82 16 47 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -80.95 410.35 -1.03 -81.98 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.58 Total: 22.53 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 6.99 Total: -7.96 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -8.22 Total: -102.30 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.09 Total: -30.53 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -80.95 -1.03 -81.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753951086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.559 kcal (2) G-P(sol) polarization free energy of solvation -80.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds