Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30259 * 125.61709 * 2 1 4 4 C 1.34472 * 108.69809 * 179.78240 * 3 2 1 5 5 C 1.50709 * 126.16630 * 180.27605 * 4 3 2 6 6 C 1.34332 * 107.67014 * 0.39218 * 4 3 2 7 7 C 1.50704 * 126.44241 * 179.87898 * 6 4 3 8 8 N 1.46898 * 109.47041 * 89.71425 * 7 6 4 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00074 * 89.99766 * 12 11 10 14 14 C 1.34779 * 119.99719 * 269.99926 * 12 11 10 15 15 O 1.21282 * 120.00564 * 0.02562 * 14 12 11 16 16 C 1.50708 * 119.99716 * 179.97438 * 14 12 11 17 17 S 1.80999 * 109.47002 * 180.02562 * 16 14 12 18 18 C 1.76200 * 99.99754 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00385 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99617 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00156 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99600 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47100 * 59.99993 * 22 20 18 24 24 H 1.48504 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47295 * 300.00056 * 22 20 18 26 26 O 1.33968 * 125.62160 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46825 * 269.97118 * 1 2 3 28 28 H 1.09001 * 109.47246 * 29.96977 * 1 2 3 29 29 H 1.09002 * 109.47150 * 149.97368 * 1 2 3 30 30 H 1.09004 * 109.46505 * 270.14063 * 5 4 3 31 31 H 1.09003 * 109.46809 * 30.13959 * 5 4 3 32 32 H 1.09000 * 109.47194 * 150.14232 * 5 4 3 33 33 H 1.08997 * 109.46924 * 329.71337 * 7 6 4 34 34 H 1.08995 * 109.46962 * 209.71491 * 7 6 4 35 35 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 36 36 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 37 37 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 38 38 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 39 39 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 40 40 H 1.08996 * 109.47261 * 300.00171 * 11 10 9 41 41 H 1.09000 * 109.46870 * 59.99782 * 11 10 9 42 42 H 1.09002 * 109.47156 * 90.00140 * 13 12 11 43 43 H 1.09002 * 109.47201 * 210.00104 * 13 12 11 44 44 H 1.09001 * 109.47041 * 330.00278 * 13 12 11 45 45 H 1.09001 * 109.46855 * 300.00175 * 16 14 12 46 46 H 1.09004 * 109.46610 * 60.00215 * 16 14 12 47 47 H 0.96999 * 119.99411 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 0.0048 5 6 4.7570 1.5728 0.0124 6 6 3.5697 -0.6756 -0.0009 7 6 4.7937 -1.5548 -0.0011 8 7 5.1913 -1.8408 1.3839 9 6 6.3837 -2.6981 1.4229 10 6 6.7661 -2.9740 2.8783 11 6 8.0075 -3.8673 2.9190 12 7 8.3740 -4.1310 4.3127 13 6 7.8162 -5.2926 5.0096 14 6 9.2244 -3.3048 4.9537 15 8 9.6858 -2.3429 4.3770 16 6 9.6010 -3.5757 6.3876 17 16 10.7482 -2.2989 6.9616 18 6 11.0137 -2.8471 8.6150 19 1 10.5177 -3.7362 8.9754 20 6 11.8597 -2.1357 9.4546 21 7 12.4638 -1.0518 9.0155 22 14 12.1406 -2.7165 11.2076 23 1 12.7200 -4.0837 11.1892 24 1 13.0793 -1.7908 11.8914 25 1 10.8466 -2.7371 11.9357 26 8 2.2873 -1.0890 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 5.0505 1.7954 -1.0135 31 1 4.5113 2.5003 0.5296 32 1 5.5805 1.0772 0.5265 33 1 5.6080 -1.0438 -0.5147 34 1 4.5696 -2.4894 -0.5151 35 1 4.4305 -2.2565 1.9000 36 1 6.1701 -3.6407 0.9188 37 1 7.2092 -2.1954 0.9190 38 1 6.9795 -2.0316 3.3828 39 1 5.9404 -3.4768 3.3819 40 1 7.7937 -4.8096 2.4147 41 1 8.8333 -3.3649 2.4153 42 1 8.4714 -6.1517 4.8658 43 1 7.7338 -5.0726 6.0740 44 1 6.8283 -5.5176 4.6076 45 1 8.7043 -3.5633 7.0073 46 1 10.0788 -4.5529 6.4593 47 1 13.0552 -0.5549 9.6022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754358550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = -48.335746 kcal Electronic energy + Delta-G solvation = -25960.509219 eV Core-core repulsion = 22076.944830 eV Total energy + Delta-G solvation = -3883.564388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.37956 -40.83837 -38.05621 -36.66977 -36.19916 -34.58351 -34.32483 -32.86091 -30.81628 -30.20012 -28.90154 -27.68941 -27.54427 -25.66656 -24.23382 -22.80090 -22.59885 -21.56495 -20.59439 -19.51689 -18.07050 -17.91825 -17.75119 -17.34432 -16.89757 -16.85004 -16.74187 -15.98256 -15.69048 -15.48299 -15.45663 -14.77294 -14.48714 -14.47385 -14.30985 -14.20777 -13.85879 -13.82603 -13.58925 -13.53647 -13.46457 -13.26176 -13.16451 -12.95813 -12.90633 -12.86018 -12.72530 -12.63346 -12.46870 -11.92125 -11.77030 -11.66623 -11.54397 -11.12681 -10.86726 -10.26793 -9.73139 -9.64440 -9.42658 -8.67288 -8.34164 -6.12807 0.34878 1.26513 1.44015 1.46418 1.54970 1.56912 1.60264 1.65212 2.15658 2.28234 2.99700 3.03934 3.18977 3.28446 3.66196 3.73600 3.84921 4.01709 4.04494 4.16440 4.23797 4.27331 4.34050 4.38695 4.48182 4.49319 4.51827 4.60541 4.61829 4.67563 4.70143 4.70409 4.80643 4.82004 4.91331 4.94560 5.01746 5.16002 5.16626 5.23048 5.41201 5.41295 5.63332 5.87363 6.19531 6.23864 6.29483 6.71050 7.06644 7.17527 8.74832 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.001670 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.930558 B =16758.938403 C =17371.883225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.521 5.521 4 C -0.011 4.011 5 C -0.071 4.071 6 C -0.063 4.063 7 C 0.155 3.845 8 N -0.699 5.699 9 C 0.072 3.928 10 C -0.123 4.123 11 C 0.118 3.882 12 N -0.612 5.612 13 C 0.071 3.929 14 C 0.528 3.472 15 O -0.564 6.564 16 C -0.124 4.124 17 S -0.154 6.154 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 O -0.211 6.211 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.345 0.655 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.864 -8.719 -20.254 32.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.252 5.252 4 C -0.131 4.131 5 C -0.128 4.128 6 C -0.115 4.115 7 C 0.027 3.973 8 N -0.331 5.331 9 C -0.057 4.057 10 C -0.162 4.162 11 C -0.005 4.005 12 N -0.346 5.346 13 C -0.071 4.071 14 C 0.315 3.685 15 O -0.442 6.442 16 C -0.275 4.275 17 S 0.073 5.927 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 O -0.099 6.099 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.163 0.837 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.960 -6.052 -21.024 31.714 hybrid contribution -0.203 -2.244 1.529 2.723 sum -23.162 -8.296 -19.495 31.391 Atomic orbital electron populations 1.20536 0.78139 1.06540 1.06067 1.27226 0.97940 0.78106 0.98516 1.70384 1.02546 1.31632 1.20635 1.21923 0.93604 0.93128 1.04472 1.20185 0.91634 0.97537 1.03467 1.23317 0.83706 0.95069 1.09437 1.20290 0.89235 0.96914 0.90895 1.60421 1.08867 1.51263 1.12532 1.21814 0.92385 0.95601 0.95902 1.21788 0.97867 0.99480 0.97091 1.21514 0.96851 1.01073 0.81065 1.47875 1.45365 1.27574 1.13781 1.22089 1.00394 0.86671 0.97924 1.20151 0.78394 0.82136 0.87780 1.90678 1.54907 1.30292 1.68365 1.23385 1.03744 1.04368 0.96030 1.85587 1.57173 1.35888 1.14060 1.23167 1.33453 1.15293 0.97593 0.89912 1.26143 0.94254 0.94512 1.04239 1.70183 1.28843 1.17281 1.38431 0.85002 0.78585 0.78426 0.75965 1.18551 1.20395 1.18662 1.84356 1.16909 1.38130 1.70475 0.87480 0.87211 0.87243 0.89506 0.91294 0.89732 0.86709 0.91649 0.83656 0.92106 0.90671 0.94351 0.90622 0.86710 0.91867 0.90967 0.91084 0.88018 0.87639 0.87525 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.19 3.54 8.34 88.34 0.74 4.27 16 3 N -0.52 -12.51 11.29 -291.97 -3.30 -15.81 16 4 C -0.01 -0.26 7.11 41.26 0.29 0.04 16 5 C -0.07 -1.32 10.05 71.24 0.72 -0.60 16 6 C -0.06 -1.24 6.90 24.79 0.17 -1.07 16 7 C 0.16 2.22 5.84 85.56 0.50 2.72 16 8 N -0.70 -11.42 6.49 -517.93 -3.36 -14.78 16 9 C 0.07 1.04 5.68 86.30 0.49 1.53 16 10 C -0.12 -2.37 5.80 30.59 0.18 -2.19 16 11 C 0.12 2.38 5.41 86.38 0.47 2.85 16 12 N -0.61 -15.66 2.87 -846.76 -2.43 -18.09 16 13 C 0.07 1.17 10.24 127.77 1.31 2.48 16 14 C 0.53 20.04 7.69 87.66 0.67 20.72 16 15 O -0.56 -26.67 15.44 -3.03 -0.05 -26.72 16 16 C -0.12 -5.04 4.71 71.24 0.34 -4.70 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 18 C -0.55 -31.54 9.50 67.96 0.65 -30.89 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 22 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 O -0.21 -4.18 10.78 -3.66 -0.04 -4.22 16 27 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 33 H 0.11 1.42 7.81 -2.39 -0.02 1.40 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.35 5.44 8.72 -89.69 -0.78 4.66 16 36 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 41 H 0.06 1.60 7.42 -2.39 -0.02 1.58 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 44 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 45 H 0.11 3.90 7.40 -2.40 -0.02 3.88 16 46 H 0.11 3.91 8.11 -2.39 -0.02 3.89 16 47 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -85.01 410.33 -0.11 -85.12 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.19 Total: 18.14 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 7.73 Total: -3.32 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -8.81 Total: -104.87 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.09 Total: -30.94 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -85.01 -0.11 -85.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.782 kcal (2) G-P(sol) polarization free energy of solvation -85.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds