Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30173 * 126.80312 * 2 1 4 4 O 1.20924 * 111.60387 * 180.25471 * 3 2 1 5 5 C 1.34035 * 111.56656 * 359.74922 * 4 3 2 6 6 C 1.50705 * 126.77754 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.45055 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.01213 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.46943 * 90.00139 * 8 7 5 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47224 * 325.00460 * 10 9 8 12 12 C 1.53002 * 109.47102 * 85.00132 * 10 9 8 13 13 C 1.52996 * 109.46819 * 205.00022 * 10 9 8 14 14 H 1.08996 * 109.47054 * 65.00734 * 13 10 9 15 15 C 1.52999 * 109.47572 * 304.99982 * 13 10 9 16 16 N 1.46509 * 109.46788 * 184.99882 * 13 10 9 17 17 C 1.34773 * 119.99872 * 204.99975 * 16 13 10 18 18 O 1.21280 * 120.00477 * 0.02562 * 17 16 13 19 19 C 1.50708 * 119.99987 * 179.97438 * 17 16 13 20 20 S 1.80996 * 109.47030 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99811 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99856 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00239 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99554 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47461 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47288 * 120.00007 * 25 23 21 28 28 H 1.48501 * 109.46919 * 239.99809 * 25 23 21 29 29 H 1.09003 * 109.46836 * 270.15648 * 1 2 3 30 30 H 1.08996 * 109.46913 * 30.16336 * 1 2 3 31 31 H 1.09004 * 109.47003 * 150.16115 * 1 2 3 32 32 H 1.08999 * 109.46860 * 270.00152 * 6 5 4 33 33 H 1.09000 * 109.46834 * 29.99604 * 6 5 4 34 34 H 1.08997 * 109.47539 * 149.99780 * 6 5 4 35 35 H 1.09004 * 109.46763 * 330.00580 * 8 7 5 36 36 H 1.08995 * 109.47483 * 210.00237 * 8 7 5 37 37 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 38 38 H 1.08996 * 109.46950 * 299.99914 * 12 10 9 39 39 H 1.09003 * 109.46813 * 60.00077 * 12 10 9 40 40 H 1.08999 * 109.47105 * 180.02562 * 12 10 9 41 41 H 1.08990 * 109.46720 * 60.00067 * 15 13 10 42 42 H 1.08996 * 109.46944 * 180.02562 * 15 13 10 43 43 H 1.08998 * 109.46854 * 300.00173 * 15 13 10 44 44 H 0.96995 * 119.99975 * 25.00274 * 16 13 10 45 45 H 1.08997 * 109.46980 * 300.00717 * 19 17 16 46 46 H 1.09004 * 109.46619 * 59.99929 * 19 17 16 47 47 H 0.97000 * 119.99840 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 4.9022 -1.3697 -0.0080 7 6 2.3540 -1.1321 0.0037 8 6 1.9590 -2.5864 0.0075 9 7 1.8381 -3.0572 1.3937 10 6 1.4540 -4.4745 1.4367 11 1 0.7799 -4.6936 0.6086 12 6 2.7061 -5.3460 1.3193 13 6 0.7482 -4.7717 2.7612 14 1 -0.1893 -4.2175 2.8056 15 6 1.6470 -4.3477 3.9245 16 7 0.4716 -6.2073 2.8558 17 6 -0.5398 -6.6492 3.6292 18 8 -1.2214 -5.8584 4.2464 19 6 -0.8247 -8.1259 3.7260 20 16 -2.2318 -8.3977 4.8316 21 6 -2.3400 -10.1550 4.7626 22 1 -1.6452 -10.7154 4.1546 23 6 -3.3189 -10.8191 5.4889 24 7 -4.1660 -10.1360 6.2295 25 14 -3.4332 -12.6821 5.4163 26 1 -2.3732 -13.2086 4.5194 27 1 -3.2522 -13.2427 6.7795 28 1 -4.7655 -13.0762 4.8920 29 1 -0.3633 0.0028 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5114 32 1 5.2111 -1.5551 -1.0367 33 1 5.6682 -0.7852 0.5016 34 1 4.7673 -2.3203 0.5078 35 1 2.7201 -3.1709 -0.5096 36 1 1.0023 -2.7045 -0.5011 37 1 2.6933 -2.8990 1.9053 38 1 3.2089 -5.1343 0.3757 39 1 3.3801 -5.1270 2.1474 40 1 2.4211 -6.3976 1.3507 41 1 1.8526 -3.2797 3.8541 42 1 1.1442 -4.5598 4.8680 43 1 2.5844 -4.9020 3.8800 44 1 1.0165 -6.8397 2.3619 45 1 -1.0601 -8.5162 2.7360 46 1 0.0521 -8.6399 4.1201 47 1 -4.8499 -10.6001 6.7373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = -11.785395 kcal Electronic energy + Delta-G solvation = -26831.677186 eV Core-core repulsion = 22949.697740 eV Total energy + Delta-G solvation = -3881.979446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.89992 -40.90083 -38.93250 -36.66977 -35.12612 -34.57484 -34.28480 -32.32583 -30.47585 -29.62932 -29.58725 -28.62134 -27.65056 -26.55246 -25.19124 -22.53506 -21.95620 -21.01378 -20.77205 -19.84191 -18.67217 -18.20482 -17.82551 -17.19741 -16.87265 -16.56870 -16.35960 -15.99413 -15.69823 -15.55221 -14.92316 -14.82647 -14.72512 -14.41311 -14.28163 -14.14231 -13.90790 -13.73651 -13.59219 -13.35741 -13.26949 -13.17907 -13.12982 -13.10495 -12.91897 -12.89554 -12.60819 -12.45479 -11.93393 -11.83992 -11.74500 -11.66353 -11.15047 -10.89983 -10.82699 -10.24756 -10.16073 -10.07105 -9.32887 -8.65166 -8.33813 -6.11510 0.51291 1.19432 1.29126 1.42077 1.48796 1.59443 1.67202 2.22948 2.27292 2.31904 3.00380 3.21212 3.33177 3.43613 3.57114 3.78841 3.83697 3.91652 4.04357 4.12072 4.28232 4.32886 4.39222 4.48898 4.52671 4.53583 4.61734 4.64765 4.70182 4.70926 4.76640 4.79628 4.90085 4.92020 4.93591 5.03172 5.10125 5.17183 5.26220 5.31918 5.43145 5.47144 5.57872 6.01377 6.21053 6.44990 6.57076 7.07607 7.32108 7.35075 8.75603 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.001778 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.254679 B =15746.490951 C =16223.557462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.023 3.977 3 N -0.407 5.407 4 O 0.079 5.921 5 C -0.021 4.021 6 C -0.075 4.075 7 C -0.207 4.207 8 C 0.145 3.855 9 N -0.684 5.684 10 C 0.093 3.907 11 H 0.087 0.913 12 C -0.186 4.186 13 C 0.154 3.846 14 H 0.059 0.941 15 C -0.155 4.155 16 N -0.707 5.707 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.129 4.129 20 S -0.154 6.154 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.350 0.650 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.075 0.925 44 H 0.413 0.587 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.727 13.961 -18.172 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 N -0.116 5.116 4 O 0.018 5.982 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.211 4.211 8 C 0.017 3.983 9 N -0.316 5.316 10 C -0.017 4.017 11 H 0.105 0.895 12 C -0.244 4.244 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.213 4.213 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.073 5.927 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.170 0.830 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.252 0.748 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.636 16.842 -16.989 31.593 hybrid contribution 0.954 -2.909 -0.652 3.131 sum 21.590 13.933 -17.641 31.168 Atomic orbital electron populations 1.20205 0.85099 1.04121 1.03722 1.23890 0.99854 0.88832 1.00997 1.73856 0.89949 1.25234 1.22605 1.84761 1.21317 1.23876 1.68235 1.25038 0.99611 0.83214 1.00642 1.20585 0.88364 0.98677 1.05552 1.21004 0.91310 0.97679 1.11107 1.20108 1.01929 0.86547 0.89730 1.60283 1.40681 1.17139 1.13546 1.21531 0.97074 0.87524 0.95594 0.89491 1.22569 0.97650 1.00683 1.03520 1.20826 0.98569 0.79787 0.95927 0.92276 1.22100 0.99687 1.02568 0.96954 1.45906 1.33053 1.08901 1.48460 1.20053 0.79883 0.89560 0.78546 1.90697 1.50053 1.57763 1.45835 1.23379 1.03625 0.95919 1.05128 1.85623 1.38173 1.08988 1.59909 1.23243 1.20395 0.91598 1.33959 0.89825 1.26150 0.94098 1.05210 0.93886 1.70198 1.17901 1.38247 1.28497 0.84893 0.78600 0.75933 0.78441 1.17891 1.20018 1.20015 0.90171 0.90748 0.88732 0.87672 0.88671 0.87596 0.91206 0.89721 0.82957 0.90380 0.91013 0.91361 0.90141 0.95628 0.90613 0.74811 0.87196 0.87262 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.39 71.24 0.74 -0.42 16 2 C 0.02 0.44 7.33 43.58 0.32 0.76 16 3 N -0.41 -9.32 12.07 -49.55 -0.60 -9.91 16 4 O 0.08 1.53 11.20 71.68 0.80 2.33 16 5 C -0.02 -0.26 7.49 25.04 0.19 -0.07 16 6 C -0.07 -0.22 10.25 71.24 0.73 0.51 16 7 C -0.21 -2.91 5.83 -19.74 -0.12 -3.02 16 8 C 0.15 1.40 5.73 85.56 0.49 1.89 16 9 N -0.68 -7.77 5.60 -495.57 -2.77 -10.54 16 10 C 0.09 1.11 2.64 44.91 0.12 1.23 16 11 H 0.09 1.07 7.80 -2.39 -0.02 1.06 16 12 C -0.19 -1.25 8.68 71.98 0.62 -0.62 16 13 C 0.15 3.22 2.63 44.99 0.12 3.34 16 14 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 15 C -0.15 -3.14 8.86 71.98 0.64 -2.50 16 16 N -0.71 -16.52 4.99 -442.52 -2.21 -18.73 16 17 C 0.53 19.24 7.81 87.66 0.68 19.93 16 18 O -0.57 -26.21 15.52 -3.03 -0.05 -26.26 16 19 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 20 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 21 C -0.54 -30.86 9.50 67.96 0.65 -30.22 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.63 5.49 84.86 0.47 1.10 16 24 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 25 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.18 7.65 -2.38 -0.02 1.16 16 32 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.11 -0.03 8.05 -2.39 -0.02 -0.04 16 35 H 0.07 0.35 7.37 -2.39 -0.02 0.33 16 36 H 0.08 0.89 7.56 -2.39 -0.02 0.87 16 37 H 0.35 3.28 7.68 -89.69 -0.69 2.59 16 38 H 0.08 0.27 7.45 -2.39 -0.02 0.26 16 39 H 0.07 0.45 6.55 -2.39 -0.02 0.43 16 40 H 0.07 0.46 6.29 -2.39 -0.02 0.44 16 41 H 0.08 1.44 7.13 -2.39 -0.02 1.42 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.08 1.16 6.56 -2.39 -0.02 1.15 16 44 H 0.41 6.64 6.58 -92.71 -0.61 6.03 16 45 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 46 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -82.19 400.21 2.12 -80.07 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.30 Total: 15.81 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 6.09 Total: -12.65 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -5.29 Total: -94.97 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.76 Total: -23.92 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -82.19 2.12 -80.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.284 kcal (2) G-P(sol) polarization free energy of solvation -82.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds