Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30179 * 126.80619 * 2 1 4 4 O 1.20917 * 111.60484 * 180.25340 * 3 2 1 5 5 C 1.34041 * 111.56808 * 359.74161 * 4 3 2 6 6 C 1.50706 * 126.77769 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44873 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.00934 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.46633 * 90.00497 * 8 7 5 10 10 C 1.46902 * 110.99714 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46873 * 324.99101 * 10 9 8 12 12 C 1.52997 * 109.47472 * 84.99502 * 10 9 8 13 13 C 1.52999 * 109.47278 * 205.00011 * 10 9 8 14 14 H 1.09001 * 109.46751 * 299.99680 * 13 10 9 15 15 C 1.52997 * 109.47284 * 59.99377 * 13 10 9 16 16 N 1.46499 * 109.47481 * 179.97438 * 13 10 9 17 17 C 1.34777 * 120.00199 * 154.99940 * 16 13 10 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.09001 * 109.47566 * 270.17126 * 1 2 3 30 30 H 1.09007 * 109.47200 * 30.16311 * 1 2 3 31 31 H 1.08998 * 109.47629 * 150.16817 * 1 2 3 32 32 H 1.08998 * 109.47187 * 270.00091 * 6 5 4 33 33 H 1.09001 * 109.46541 * 29.99935 * 6 5 4 34 34 H 1.08997 * 109.47030 * 149.99571 * 6 5 4 35 35 H 1.08999 * 109.47091 * 330.00385 * 8 7 5 36 36 H 1.08998 * 109.46949 * 209.99818 * 8 7 5 37 37 H 1.00895 * 110.99982 * 303.94583 * 9 8 7 38 38 H 1.08993 * 109.47268 * 60.00029 * 12 10 9 39 39 H 1.09007 * 109.46797 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47048 * 299.99625 * 12 10 9 41 41 H 1.08993 * 109.47268 * 60.00476 * 15 13 10 42 42 H 1.09006 * 109.47495 * 180.02562 * 15 13 10 43 43 H 1.09007 * 109.47320 * 300.00586 * 15 13 10 44 44 H 0.97000 * 119.99484 * 334.99037 * 16 13 10 45 45 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 46 46 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 47 47 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0034 6 6 4.9021 -1.3698 -0.0077 7 6 2.3539 -1.1321 0.0028 8 6 1.9589 -2.5864 0.0064 9 7 1.8367 -3.0571 1.3926 10 6 1.4526 -4.4744 1.4353 11 1 0.7791 -4.6934 0.6066 12 6 2.7047 -5.3459 1.3190 13 6 0.7455 -4.7715 2.7591 14 1 1.4189 -4.5525 3.5878 15 6 -0.5065 -3.9000 2.8755 16 7 0.3619 -6.1848 2.8015 17 6 0.1987 -6.8035 3.9877 18 8 0.3698 -6.1903 5.0201 19 6 -0.1899 -8.2589 4.0312 20 16 -0.3221 -8.7967 5.7544 21 6 -0.7749 -10.4826 5.5147 22 1 -0.8863 -10.8750 4.5147 23 6 -0.9875 -11.3067 6.6112 24 7 -0.8503 -10.8289 7.8300 25 14 -1.4668 -13.0942 6.3572 26 1 -0.4025 -13.7876 5.5881 27 1 -1.6346 -13.7541 7.6769 28 1 -2.7452 -13.1616 5.6045 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8886 -0.5164 31 1 -0.3634 -0.8914 -0.5112 32 1 5.2111 -1.5554 -1.0364 33 1 5.6681 -0.7852 0.5019 34 1 4.7672 -2.3203 0.5083 35 1 2.7203 -3.1709 -0.5101 36 1 1.0026 -2.7044 -0.5030 37 1 2.6914 -2.8990 1.9048 38 1 3.3781 -5.1269 2.1475 39 1 2.4196 -6.3976 1.3511 40 1 3.2083 -5.1343 0.3757 41 1 -1.1799 -4.1190 2.0469 42 1 -1.0101 -4.1114 3.8189 43 1 -0.2215 -2.8483 2.8438 44 1 0.2253 -6.6751 1.9758 45 1 -1.1504 -8.3935 3.5338 46 1 0.5692 -8.8529 3.5224 47 1 -0.9992 -11.4047 8.5963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = -14.689848 kcal Electronic energy + Delta-G solvation = -26832.263779 eV Core-core repulsion = 22950.158387 eV Total energy + Delta-G solvation = -3882.105393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.88118 -40.83751 -38.81337 -36.60346 -35.13645 -34.56943 -34.28844 -32.27406 -30.68802 -29.81371 -29.55686 -28.60719 -27.63717 -26.41848 -24.46741 -22.52793 -21.84910 -21.51656 -20.99157 -19.80992 -18.66182 -18.09259 -17.82748 -17.34654 -16.86436 -16.37289 -16.22628 -16.04138 -15.69023 -15.21211 -14.95951 -14.74390 -14.64165 -14.41551 -14.25840 -14.19251 -13.93003 -13.75528 -13.61491 -13.47105 -13.33792 -13.16522 -13.14372 -13.05871 -12.85187 -12.64037 -12.57648 -12.48721 -12.17789 -11.88123 -11.75412 -11.58306 -11.11528 -10.89899 -10.80326 -10.25127 -10.14482 -10.09740 -9.30441 -8.64695 -8.33002 -6.10936 0.51533 1.21460 1.29445 1.44767 1.48609 1.58259 1.68574 2.22806 2.27845 2.32303 3.00895 3.23673 3.33747 3.46815 3.58080 3.69930 3.84795 4.00290 4.06944 4.17201 4.28280 4.33757 4.40624 4.53646 4.54574 4.56129 4.63972 4.67720 4.68451 4.72974 4.78389 4.86910 4.89730 4.92281 4.96254 5.04166 5.14831 5.17635 5.29850 5.33994 5.42343 5.42914 5.60101 6.03948 6.20965 6.39068 6.59090 7.08089 7.33547 7.35701 8.75822 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.001758 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.086858 B =15924.209332 C =16231.668757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 N -0.409 5.409 4 O 0.076 5.924 5 C -0.024 4.024 6 C -0.075 4.075 7 C -0.206 4.206 8 C 0.147 3.853 9 N -0.680 5.680 10 C 0.095 3.905 11 H 0.104 0.896 12 C -0.182 4.182 13 C 0.154 3.846 14 H 0.058 0.942 15 C -0.144 4.144 16 N -0.706 5.706 17 C 0.536 3.464 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.154 6.154 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.345 0.655 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.081 0.919 44 H 0.415 0.585 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 16.828 -24.851 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 N -0.119 5.119 4 O 0.015 5.985 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.210 4.210 8 C 0.018 3.982 9 N -0.312 5.312 10 C -0.015 4.015 11 H 0.122 0.878 12 C -0.241 4.241 13 C 0.049 3.951 14 H 0.076 0.924 15 C -0.203 4.203 16 N -0.360 5.360 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.280 4.280 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.100 0.900 44 H 0.252 0.748 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.242 19.393 -22.912 31.128 hybrid contribution 0.139 -2.733 -1.094 2.947 sum 8.381 16.660 -24.006 30.399 Atomic orbital electron populations 1.20228 0.84675 1.04275 1.03873 1.23935 1.00024 0.88593 1.00705 1.73855 0.89918 1.25384 1.22703 1.84762 1.21461 1.23831 1.68402 1.25012 0.99676 0.83284 1.00824 1.20556 0.88613 0.98594 1.05470 1.21028 0.91171 0.97844 1.10952 1.20126 1.02217 0.86305 0.89531 1.60315 1.40385 1.16941 1.13552 1.21575 0.96605 0.87240 0.96110 0.87770 1.22489 0.98004 1.01094 1.02469 1.20834 0.96416 0.79256 0.98554 0.92394 1.21956 0.97047 1.00906 1.00343 1.45743 1.70624 1.12048 1.07568 1.20004 0.75984 0.87967 0.83908 1.90697 1.51224 1.67567 1.34933 1.23373 1.05945 0.95768 1.02926 1.85609 1.90960 1.11799 1.04300 1.23176 1.54330 0.95731 0.96139 0.89849 1.26139 0.94576 1.04583 0.93967 1.70184 1.47331 1.38399 0.98894 0.85007 0.79260 0.75986 0.77766 1.18572 1.20526 1.18669 0.89941 0.90876 0.88259 0.87635 0.88902 0.87934 0.91667 0.88751 0.83588 0.93187 0.91844 0.90375 0.91446 0.96091 0.89980 0.74838 0.87357 0.87164 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.39 71.23 0.74 -0.20 16 2 C 0.03 0.47 7.33 43.58 0.32 0.79 16 3 N -0.41 -9.12 12.07 -49.55 -0.60 -9.72 16 4 O 0.08 1.48 11.20 71.63 0.80 2.29 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.34 10.25 71.24 0.73 0.39 16 7 C -0.21 -2.74 5.83 -19.73 -0.12 -2.86 16 8 C 0.15 1.22 5.73 85.56 0.49 1.71 16 9 N -0.68 -7.44 5.47 -495.57 -2.71 -10.15 16 10 C 0.10 1.08 2.22 44.91 0.10 1.18 16 11 H 0.10 0.84 7.80 -2.38 -0.02 0.83 16 12 C -0.18 -1.91 9.00 71.98 0.65 -1.27 16 13 C 0.15 3.16 2.34 44.99 0.11 3.27 16 14 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 15 C -0.14 -3.10 9.33 71.98 0.67 -2.43 16 16 N -0.71 -16.11 4.38 -442.54 -1.94 -18.05 16 17 C 0.54 19.02 7.81 87.66 0.68 19.71 16 18 O -0.57 -25.93 15.53 -3.04 -0.05 -25.98 16 19 C -0.13 -4.94 6.16 71.24 0.44 -4.51 16 20 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 21 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.01 0.68 5.49 84.86 0.47 1.15 16 24 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 25 Si 1.00 43.20 29.55 68.60 2.03 45.22 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 0.87 7.65 -2.39 -0.02 0.85 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 0.21 8.05 -2.39 -0.02 0.19 16 35 H 0.07 0.32 7.37 -2.39 -0.02 0.30 16 36 H 0.09 0.68 7.57 -2.39 -0.02 0.66 16 37 H 0.35 3.91 8.46 -89.70 -0.76 3.16 16 38 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 39 H 0.06 0.76 7.45 -2.38 -0.02 0.74 16 40 H 0.08 0.49 7.45 -2.39 -0.02 0.47 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 1.64 7.60 -2.38 -0.02 1.63 16 44 H 0.41 6.39 8.39 -92.71 -0.78 5.62 16 45 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 46 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -81.26 406.94 2.22 -79.04 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.55 Total: 16.10 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 6.11 Total: -13.43 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.96 Total: -93.60 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.75 Total: -23.69 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -81.26 2.22 -79.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.350 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds