Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61842 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46834 * 195.02551 * 6 5 4 8 8 C 1.53001 * 109.47386 * 75.02588 * 6 5 4 9 9 N 1.46896 * 109.47156 * 315.02127 * 6 5 4 10 10 C 1.46903 * 111.00316 * 303.95663 * 9 6 5 11 11 C 1.46904 * 111.00105 * 180.02562 * 9 6 5 12 12 H 1.09003 * 109.47136 * 310.00645 * 11 9 6 13 13 C 1.53002 * 109.46908 * 70.00238 * 11 9 6 14 14 C 1.53002 * 109.47002 * 190.00200 * 11 9 6 15 15 N 1.46495 * 109.47120 * 55.00534 * 14 11 9 16 16 C 1.34775 * 120.00206 * 179.97438 * 15 14 11 17 17 O 1.21284 * 119.99850 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00304 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00099 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99688 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00196 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99741 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47466 * 60.00076 * 24 22 20 26 26 H 1.48505 * 109.46922 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47145 * 299.99614 * 24 22 20 28 28 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 30 30 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 31 31 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 32 32 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 33 33 H 1.08989 * 109.47203 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.46591 * 299.99924 * 8 6 5 35 35 H 1.08998 * 109.46674 * 59.99373 * 8 6 5 36 36 H 1.09001 * 109.46559 * 60.00153 * 10 9 6 37 37 H 1.09004 * 109.46761 * 179.97438 * 10 9 6 38 38 H 1.08998 * 109.47167 * 299.99874 * 10 9 6 39 39 H 1.09001 * 109.46922 * 300.00345 * 13 11 9 40 40 H 1.09003 * 109.46889 * 60.00256 * 13 11 9 41 41 H 1.08999 * 109.46779 * 179.97438 * 13 11 9 42 42 H 1.09003 * 109.46594 * 174.99882 * 14 11 9 43 43 H 1.08997 * 109.47496 * 295.00008 * 14 11 9 44 44 H 0.97004 * 120.00019 * 359.97438 * 15 14 11 45 45 H 1.09003 * 109.47318 * 300.00102 * 18 16 15 46 46 H 1.09000 * 109.47342 * 60.00149 * 18 16 15 47 47 H 0.96994 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0174 7 1 4.5153 -2.5513 -0.2859 8 6 5.4376 -1.5332 1.3736 9 7 5.7658 -1.0209 -0.9985 10 6 5.1576 -0.9190 -2.3319 11 6 6.9743 -1.8554 -1.0340 12 1 7.3438 -2.0031 -0.0192 13 6 6.6391 -3.2120 -1.6572 14 6 8.0493 -1.1607 -1.8723 15 7 8.2847 0.1859 -1.3456 16 6 9.1969 0.9880 -1.9296 17 8 9.8232 0.5947 -2.8909 18 6 9.4386 2.3734 -1.3883 19 16 10.7115 3.1947 -2.3789 20 6 10.7900 4.7475 -1.5499 21 1 10.1537 4.9376 -0.6982 22 6 11.6694 5.7263 -1.9915 23 7 12.4446 5.4947 -3.0299 24 14 11.7530 7.3723 -1.1121 25 1 12.1383 7.1570 0.3058 26 1 12.7630 8.2365 -1.7743 27 1 10.4239 8.0321 -1.1693 28 8 2.3075 -1.0840 -0.0073 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3633 0.8928 -0.5091 31 1 -0.3633 -0.8871 -0.5187 32 1 1.9821 2.1112 0.0037 33 1 6.3225 -2.1694 1.3683 34 1 5.7226 -0.5159 1.6420 35 1 4.7211 -1.9138 2.1016 36 1 4.3059 -0.2400 -2.2917 37 1 5.8939 -0.5363 -3.0387 38 1 4.8219 -1.9045 -2.6544 39 1 5.8732 -3.7068 -1.0600 40 1 6.2696 -3.0643 -2.6720 41 1 7.5359 -3.8310 -1.6839 42 1 8.9741 -1.7358 -1.8258 43 1 7.7153 -1.0928 -2.9076 44 1 7.7840 0.5003 -0.5766 45 1 8.5138 2.9484 -1.4354 46 1 9.7720 2.3059 -0.3527 47 1 13.0594 6.1786 -3.3382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755294111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -3.663497 kcal Electronic energy + Delta-G solvation = -27442.330728 eV Core-core repulsion = 23560.703474 eV Total energy + Delta-G solvation = -3881.627254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.63792 -39.77648 -38.49815 -35.09560 -34.59028 -33.08858 -32.34908 -31.87761 -30.68515 -29.23293 -27.22543 -26.10853 -25.62700 -25.27707 -24.05002 -22.33118 -21.17342 -20.09467 -19.62205 -17.79785 -17.47384 -17.33601 -16.60027 -16.11615 -16.04054 -15.27480 -15.15581 -14.73308 -14.72612 -14.52625 -14.16000 -13.92803 -13.72147 -13.58440 -13.27902 -13.14852 -12.82003 -12.78079 -12.76163 -12.64012 -12.43180 -12.35202 -12.05706 -11.93646 -11.61432 -11.49432 -11.38218 -10.97710 -10.96357 -10.90944 -10.69468 -10.64211 -9.73737 -9.25343 -8.98483 -8.96060 -8.73234 -8.62301 -8.13608 -6.40228 -6.13786 -3.83172 1.11098 2.17651 2.45641 3.15437 3.27226 3.29492 3.32967 3.37579 3.50107 3.67980 3.90561 4.28641 4.39713 4.45561 4.52793 4.59981 4.71275 4.75138 4.88963 4.91691 4.94638 5.02169 5.11547 5.19768 5.21057 5.27670 5.28497 5.34451 5.39440 5.42954 5.55362 5.62908 5.68050 5.71450 5.77051 5.82071 5.87713 5.96130 6.04634 6.05568 6.30447 6.57466 6.61535 6.86456 7.53745 7.67536 7.97479 8.43445 8.80948 9.31452 10.93640 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.002436 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.607532 B =11491.976001 C =13126.871489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.054 4.054 3 C -0.042 4.042 4 N -0.446 5.446 5 C 0.190 3.810 6 C 0.182 3.818 7 H 0.068 0.932 8 C -0.147 4.147 9 N -0.513 5.513 10 C 0.018 3.982 11 C 0.065 3.935 12 H 0.099 0.901 13 C -0.188 4.188 14 C 0.134 3.866 15 N -0.725 5.725 16 C 0.531 3.469 17 O -0.526 6.526 18 C -0.151 4.151 19 S -0.063 6.063 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 O -0.206 6.206 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.406 0.594 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.245 -18.683 8.685 31.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C -0.181 4.181 4 N -0.174 5.174 5 C -0.018 4.018 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.204 4.204 9 N -0.239 5.239 10 C -0.130 4.130 11 C -0.043 4.043 12 H 0.117 0.883 13 C -0.247 4.247 14 C 0.009 3.991 15 N -0.380 5.380 16 C 0.317 3.683 17 O -0.402 6.402 18 C -0.301 4.301 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 O -0.093 6.093 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.241 0.759 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.388 -18.474 7.101 29.882 hybrid contribution -1.960 0.591 1.712 2.669 sum -24.349 -17.883 8.813 31.469 Atomic orbital electron populations 1.20258 0.84030 1.04344 1.03726 1.23471 0.94960 0.84666 1.07646 1.23227 0.87988 1.00428 1.06491 1.70520 1.22196 1.08814 1.15852 1.25916 0.83643 0.90472 1.01755 1.19808 0.84614 0.92844 0.95436 0.91399 1.21950 1.00948 1.04509 0.93035 1.62070 1.05027 1.49972 1.06789 1.22496 1.00501 1.00088 0.89874 1.22152 0.90112 0.90862 1.01217 0.88299 1.22419 1.02786 0.97541 1.01929 1.21252 0.96771 0.83818 0.97304 1.45814 1.42112 1.14738 1.35338 1.20269 0.78569 0.86435 0.82990 1.90686 1.47753 1.75120 1.26614 1.23502 1.06133 0.95568 1.04944 1.85337 1.44901 1.12800 1.40571 1.22844 1.26908 1.00115 1.18272 0.91000 1.24984 0.94715 0.98791 0.95134 1.70013 1.22376 1.34511 1.23552 0.86239 0.78006 0.81864 0.79471 1.19966 1.20887 1.19959 1.84359 1.17879 1.36831 1.70262 0.89869 0.88911 0.90488 0.80013 0.90588 0.90132 0.91726 0.91516 0.90059 0.95085 0.92156 0.91568 0.91038 0.91058 0.91736 0.75868 0.89213 0.89387 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.43 36.00 0.38 0.08 16 2 C -0.05 -0.47 7.39 -35.69 -0.26 -0.73 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.45 -5.43 10.95 -11.10 -0.12 -5.55 16 5 C 0.19 2.00 5.60 -12.94 -0.07 1.92 16 6 C 0.18 1.51 2.41 -68.87 -0.17 1.35 16 7 H 0.07 0.48 6.62 -51.92 -0.34 0.14 16 8 C -0.15 -1.03 8.97 37.16 0.33 -0.69 16 9 N -0.51 -4.72 4.00 -228.28 -0.91 -5.63 16 10 C 0.02 0.18 8.37 60.07 0.50 0.68 16 11 C 0.06 0.52 2.28 -67.71 -0.15 0.37 16 12 H 0.10 0.70 5.83 -51.93 -0.30 0.40 16 13 C -0.19 -1.21 8.44 37.16 0.31 -0.90 16 14 C 0.13 1.55 4.85 -4.04 -0.02 1.53 16 15 N -0.73 -10.33 5.39 -60.30 -0.32 -10.65 16 16 C 0.53 10.39 7.85 -10.99 -0.09 10.30 16 17 O -0.53 -12.33 15.86 5.55 0.09 -12.24 16 18 C -0.15 -3.22 6.16 36.00 0.22 -2.99 16 19 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 20 C -0.53 -15.62 9.50 30.94 0.29 -15.33 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.75 13.22 55.49 0.73 -26.01 16 24 Si 0.92 21.93 29.55 -169.99 -5.02 16.90 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 O -0.21 -2.11 10.78 5.36 0.06 -2.05 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.08 0.42 6.20 -51.94 -0.32 0.09 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.76 6.73 -51.93 -0.35 0.41 16 37 H 0.08 0.90 6.40 -51.93 -0.33 0.56 16 38 H 0.03 0.26 6.45 -51.93 -0.34 -0.08 16 39 H 0.06 0.33 6.69 -51.93 -0.35 -0.02 16 40 H 0.07 0.46 6.41 -51.93 -0.33 0.13 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.82 6.71 -51.93 -0.35 0.47 16 44 H 0.41 5.15 8.14 -40.82 -0.33 4.82 16 45 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -36.80 394.82 -7.91 -44.71 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.12 Total: 1.57 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.97 Total: -3.01 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.63 Total: -47.85 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.15 Total: -14.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.80 -7.91 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755294111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds