Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61842 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46834 * 195.02551 * 6 5 4 8 8 C 1.53001 * 109.47386 * 75.02588 * 6 5 4 9 9 N 1.46896 * 109.47156 * 315.02127 * 6 5 4 10 10 C 1.46903 * 111.00316 * 303.95663 * 9 6 5 11 11 C 1.46904 * 111.00105 * 180.02562 * 9 6 5 12 12 H 1.09003 * 109.47136 * 310.00645 * 11 9 6 13 13 C 1.53002 * 109.46908 * 70.00238 * 11 9 6 14 14 C 1.53002 * 109.47002 * 190.00200 * 11 9 6 15 15 N 1.46495 * 109.47120 * 55.00534 * 14 11 9 16 16 C 1.34775 * 120.00206 * 179.97438 * 15 14 11 17 17 O 1.21284 * 119.99850 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00304 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00099 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99688 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00196 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99741 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47466 * 60.00076 * 24 22 20 26 26 H 1.48505 * 109.46922 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47145 * 299.99614 * 24 22 20 28 28 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 30 30 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 31 31 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 32 32 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 33 33 H 1.08989 * 109.47203 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.46591 * 299.99924 * 8 6 5 35 35 H 1.08998 * 109.46674 * 59.99373 * 8 6 5 36 36 H 1.09001 * 109.46559 * 60.00153 * 10 9 6 37 37 H 1.09004 * 109.46761 * 179.97438 * 10 9 6 38 38 H 1.08998 * 109.47167 * 299.99874 * 10 9 6 39 39 H 1.09001 * 109.46922 * 300.00345 * 13 11 9 40 40 H 1.09003 * 109.46889 * 60.00256 * 13 11 9 41 41 H 1.08999 * 109.46779 * 179.97438 * 13 11 9 42 42 H 1.09003 * 109.46594 * 174.99882 * 14 11 9 43 43 H 1.08997 * 109.47496 * 295.00008 * 14 11 9 44 44 H 0.97004 * 120.00019 * 359.97438 * 15 14 11 45 45 H 1.09003 * 109.47318 * 300.00102 * 18 16 15 46 46 H 1.09000 * 109.47342 * 60.00149 * 18 16 15 47 47 H 0.96994 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0174 7 1 4.5153 -2.5513 -0.2859 8 6 5.4376 -1.5332 1.3736 9 7 5.7658 -1.0209 -0.9985 10 6 5.1576 -0.9190 -2.3319 11 6 6.9743 -1.8554 -1.0340 12 1 7.3438 -2.0031 -0.0192 13 6 6.6391 -3.2120 -1.6572 14 6 8.0493 -1.1607 -1.8723 15 7 8.2847 0.1859 -1.3456 16 6 9.1969 0.9880 -1.9296 17 8 9.8232 0.5947 -2.8909 18 6 9.4386 2.3734 -1.3883 19 16 10.7115 3.1947 -2.3789 20 6 10.7900 4.7475 -1.5499 21 1 10.1537 4.9376 -0.6982 22 6 11.6694 5.7263 -1.9915 23 7 12.4446 5.4947 -3.0299 24 14 11.7530 7.3723 -1.1121 25 1 12.1383 7.1570 0.3058 26 1 12.7630 8.2365 -1.7743 27 1 10.4239 8.0321 -1.1693 28 8 2.3075 -1.0840 -0.0073 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3633 0.8928 -0.5091 31 1 -0.3633 -0.8871 -0.5187 32 1 1.9821 2.1112 0.0037 33 1 6.3225 -2.1694 1.3683 34 1 5.7226 -0.5159 1.6420 35 1 4.7211 -1.9138 2.1016 36 1 4.3059 -0.2400 -2.2917 37 1 5.8939 -0.5363 -3.0387 38 1 4.8219 -1.9045 -2.6544 39 1 5.8732 -3.7068 -1.0600 40 1 6.2696 -3.0643 -2.6720 41 1 7.5359 -3.8310 -1.6839 42 1 8.9741 -1.7358 -1.8258 43 1 7.7153 -1.0928 -2.9076 44 1 7.7840 0.5003 -0.5766 45 1 8.5138 2.9484 -1.4354 46 1 9.7720 2.3059 -0.3527 47 1 13.0594 6.1786 -3.3382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755294111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = -32.603678 kcal Electronic energy + Delta-G solvation = -27443.585669 eV Core-core repulsion = 23560.703474 eV Total energy + Delta-G solvation = -3882.882195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.34714 -40.83612 -39.71334 -35.99058 -35.53305 -34.57154 -33.95987 -32.54509 -31.49806 -30.66102 -27.78854 -27.72419 -26.88014 -26.35476 -24.76492 -23.02327 -21.91413 -21.59788 -20.40990 -19.72015 -18.29680 -18.05523 -17.65442 -17.38217 -17.17188 -16.86546 -16.39689 -16.10767 -15.74940 -15.71137 -15.19970 -14.79962 -14.65098 -14.48451 -14.31368 -14.21692 -13.89384 -13.70744 -13.45553 -13.33055 -13.27993 -13.20645 -13.15236 -12.93223 -12.85715 -12.73805 -12.58327 -12.52097 -12.25786 -12.13708 -11.73456 -11.59652 -11.39517 -11.11768 -10.90002 -10.26549 -9.98496 -9.62110 -9.37658 -8.64485 -8.33060 -6.10811 0.42980 1.28805 1.44517 1.47637 1.53249 1.58889 1.69406 1.72518 2.28427 2.38651 2.81096 3.00484 3.05498 3.35753 3.70103 3.81186 3.93525 4.00737 4.05457 4.11841 4.13969 4.23601 4.30661 4.33571 4.42194 4.49870 4.54943 4.59823 4.63304 4.65899 4.72586 4.74217 4.82024 4.84633 4.99318 5.04966 5.07736 5.17934 5.23700 5.30704 5.36445 5.42817 5.53435 5.88384 5.96500 6.21209 6.63055 6.81817 7.07802 7.33934 8.76006 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.002436 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.607532 B =11491.976001 C =13126.871489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.048 4.048 3 C -0.071 4.071 4 N -0.482 5.482 5 C 0.181 3.819 6 C 0.184 3.816 7 H 0.087 0.913 8 C -0.142 4.142 9 N -0.526 5.526 10 C 0.026 3.974 11 C 0.075 3.925 12 H 0.118 0.882 13 C -0.183 4.183 14 C 0.130 3.870 15 N -0.699 5.699 16 C 0.533 3.467 17 O -0.571 6.571 18 C -0.128 4.128 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.263 1.263 28 O -0.215 6.215 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.196 0.804 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.417 0.583 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.146 -19.511 10.799 34.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C -0.209 4.209 4 N -0.210 5.210 5 C -0.026 4.026 6 C 0.075 3.925 7 H 0.104 0.896 8 C -0.200 4.200 9 N -0.251 5.251 10 C -0.122 4.122 11 C -0.032 4.032 12 H 0.136 0.864 13 C -0.242 4.242 14 C 0.006 3.994 15 N -0.352 5.352 16 C 0.318 3.682 17 O -0.450 6.450 18 C -0.279 4.279 19 S 0.079 5.921 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.188 1.188 28 O -0.102 6.102 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.213 0.787 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.254 0.746 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.340 -19.332 9.251 32.431 hybrid contribution -1.496 0.759 1.069 1.989 sum -25.836 -18.573 10.321 33.451 Atomic orbital electron populations 1.20475 0.81077 1.05588 1.05058 1.24202 0.96469 0.83869 1.05557 1.23566 0.87780 1.01653 1.07890 1.70464 1.23597 1.09951 1.17010 1.26317 0.84318 0.90404 1.01603 1.19956 0.83753 0.93097 0.95696 0.89572 1.21941 1.01865 1.03866 0.92326 1.61993 1.05638 1.50965 1.06547 1.22339 0.99276 1.00418 0.90133 1.22093 0.88552 0.91005 1.01572 0.86441 1.22382 1.03733 0.96384 1.01687 1.21474 0.98213 0.82231 0.97483 1.45608 1.39928 1.15132 1.34574 1.19974 0.79293 0.86213 0.82676 1.90673 1.49884 1.75806 1.28658 1.23344 1.03909 0.96238 1.04408 1.85481 1.48533 1.14449 1.43659 1.23170 1.27399 1.00391 1.18549 0.90176 1.26131 0.93946 1.03241 0.95839 1.70176 1.23188 1.36079 1.25297 0.85009 0.78490 0.76111 0.78407 1.18599 1.20211 1.18809 1.84366 1.18030 1.37449 1.70385 0.88325 0.87216 0.89661 0.78731 0.88606 0.91938 0.90866 0.93385 0.91756 0.93446 0.90388 0.92206 0.90155 0.90901 0.92881 0.74602 0.88104 0.87484 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.43 71.24 0.74 0.30 16 2 C -0.05 -0.78 7.39 24.79 0.18 -0.59 16 3 C -0.07 -1.39 11.80 83.40 0.98 -0.40 16 4 N -0.48 -11.66 10.95 -303.83 -3.33 -14.98 16 5 C 0.18 3.65 5.60 88.34 0.49 4.14 16 6 C 0.18 2.69 2.41 44.17 0.11 2.80 16 7 H 0.09 0.95 6.62 -2.38 -0.02 0.94 16 8 C -0.14 -1.66 8.97 71.98 0.65 -1.01 16 9 N -0.53 -8.87 4.00 -876.15 -3.51 -12.38 16 10 C 0.03 0.51 8.37 127.69 1.07 1.57 16 11 C 0.08 1.05 2.28 44.92 0.10 1.16 16 12 H 0.12 1.26 5.83 -2.39 -0.01 1.25 16 13 C -0.18 -1.85 8.44 71.98 0.61 -1.24 16 14 C 0.13 2.88 4.85 86.38 0.42 3.30 16 15 N -0.70 -19.29 5.39 -463.07 -2.50 -21.79 16 16 C 0.53 20.90 7.85 87.66 0.69 21.59 16 17 O -0.57 -27.44 15.86 -3.04 -0.05 -27.49 16 18 C -0.13 -5.45 6.16 71.23 0.44 -5.01 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -32.38 9.50 67.95 0.65 -31.73 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -57.18 13.22 21.65 0.29 -56.90 16 24 Si 1.00 44.81 29.55 68.60 2.03 46.84 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 O -0.21 -4.15 10.78 -3.73 -0.04 -4.19 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.10 0.71 6.20 -2.39 -0.01 0.70 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.10 6.73 -2.39 -0.02 1.09 16 37 H 0.06 1.43 6.40 -2.39 -0.02 1.42 16 38 H 0.05 0.73 6.45 -2.39 -0.02 0.72 16 39 H 0.08 0.56 6.69 -2.39 -0.02 0.55 16 40 H 0.06 0.71 6.41 -2.39 -0.02 0.69 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.34 6.71 -2.39 -0.02 1.33 16 44 H 0.42 9.94 8.14 -92.71 -0.75 9.18 16 45 H 0.10 4.06 8.14 -2.39 -0.02 4.05 16 46 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 47 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -82.83 394.82 -0.44 -83.27 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.24 Total: 21.23 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 7.59 Total: -3.89 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -9.04 Total: -106.05 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.09 Total: -31.67 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -82.83 -0.44 -83.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755294111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.664 kcal (2) G-P(sol) polarization free energy of solvation -82.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds