Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34336 * 126.44404 * 2 1 4 4 N 1.34476 * 107.66780 * 179.72978 * 3 2 1 5 5 C 1.30256 * 108.70244 * 0.41986 * 4 3 2 6 6 C 1.50697 * 125.61938 * 179.83479 * 5 4 3 7 7 H 1.08999 * 109.46982 * 194.70059 * 6 5 4 8 8 C 1.53003 * 109.47016 * 74.70206 * 6 5 4 9 9 N 1.46907 * 109.47524 * 314.70035 * 6 5 4 10 10 C 1.46898 * 110.99763 * 315.08833 * 9 6 5 11 11 C 1.46892 * 111.00179 * 191.13347 * 9 6 5 12 12 H 1.08998 * 109.47182 * 158.20517 * 11 9 6 13 13 C 1.53004 * 109.47113 * 38.20926 * 11 9 6 14 14 C 1.52997 * 109.47268 * 278.20938 * 11 9 6 15 15 N 1.46505 * 109.47089 * 301.65618 * 14 11 9 16 16 C 1.34779 * 120.00186 * 174.95055 * 15 14 11 17 17 O 1.21280 * 119.99576 * 359.73471 * 16 15 14 18 18 C 1.50700 * 119.99673 * 180.02562 * 16 15 14 19 19 S 1.81007 * 109.46627 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99744 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99554 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99896 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99738 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00016 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46870 * 60.00584 * 24 22 20 26 26 H 1.48499 * 109.47113 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47238 * 300.00647 * 24 22 20 28 28 O 1.33963 * 108.75906 * 359.58170 * 5 4 3 29 29 H 1.09007 * 109.46959 * 270.02367 * 1 2 3 30 30 H 1.09001 * 109.47542 * 30.01604 * 1 2 3 31 31 H 1.09000 * 109.47636 * 150.02391 * 1 2 3 32 32 H 1.07999 * 126.16419 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.46753 * 38.05842 * 8 6 5 34 34 H 1.09000 * 109.47036 * 158.06228 * 8 6 5 35 35 H 1.08998 * 109.46916 * 278.05896 * 8 6 5 36 36 H 1.08997 * 109.47526 * 302.54987 * 10 9 6 37 37 H 1.09006 * 109.46768 * 62.55003 * 10 9 6 38 38 H 1.09001 * 109.47150 * 182.54502 * 10 9 6 39 39 H 1.08996 * 109.47108 * 172.57787 * 13 11 9 40 40 H 1.09010 * 109.46944 * 292.57510 * 13 11 9 41 41 H 1.08993 * 109.47443 * 52.57236 * 13 11 9 42 42 H 1.09001 * 109.47298 * 181.65901 * 14 11 9 43 43 H 1.09002 * 109.47810 * 61.65757 * 14 11 9 44 44 H 0.97001 * 119.99842 * 354.95738 * 15 14 11 45 45 H 1.08996 * 109.46967 * 299.99708 * 18 16 15 46 46 H 1.08996 * 109.47294 * 60.00483 * 18 16 15 47 47 H 0.97004 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0060 5 6 3.5764 -0.6547 0.0006 6 6 4.8004 -1.5339 0.0010 7 1 4.5163 -2.5521 -0.2649 8 6 5.4321 -1.5281 1.3945 9 7 5.7697 -1.0244 -0.9782 10 6 5.1077 -0.6778 -2.2429 11 6 6.8531 -1.9916 -1.1988 12 1 7.3246 -1.7955 -2.1618 13 6 6.2797 -3.4101 -1.1913 14 6 7.8928 -1.8558 -0.0847 15 7 8.4131 -0.4864 -0.0665 16 6 9.2704 -0.1040 0.9006 17 8 9.6074 -0.8922 1.7585 18 6 9.8052 1.3048 0.9195 19 16 10.9237 1.5066 2.3282 20 6 11.3873 3.1927 2.1116 21 1 10.9862 3.7611 1.2856 22 6 12.2680 3.7902 3.0026 23 7 12.7572 3.0971 4.0090 24 14 12.7601 5.5774 2.7726 25 1 11.5500 6.4359 2.8343 26 1 13.7039 5.9734 3.8486 27 1 13.4181 5.7437 1.4517 28 8 2.3074 -1.0840 0.0003 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9821 2.1113 -0.0004 33 1 4.6460 -1.5219 2.1496 34 1 6.0477 -2.4191 1.5181 35 1 6.0524 -0.6392 1.5085 36 1 4.5887 -1.5532 -2.6332 37 1 4.3891 0.1232 -2.0692 38 1 5.8541 -0.3461 -2.9647 39 1 7.0556 -4.1172 -1.4846 40 1 5.9261 -3.6538 -0.1893 41 1 5.4489 -3.4700 -1.8942 42 1 8.7111 -2.5531 -0.2644 43 1 7.4282 -2.0807 0.8754 44 1 8.1405 0.1451 -0.7505 45 1 10.3476 1.4999 -0.0055 46 1 8.9763 2.0068 1.0098 47 1 13.3724 3.5148 4.6319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755294113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 6.331597 kcal Electronic energy + Delta-G solvation = -27712.384283 eV Core-core repulsion = 23831.190448 eV Total energy + Delta-G solvation = -3881.193834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64419 -39.86996 -38.47205 -35.03777 -34.37281 -33.09730 -32.34784 -31.61506 -31.34679 -29.22300 -27.12573 -26.10682 -25.42331 -25.25230 -23.73733 -22.37849 -21.41878 -20.17926 -19.76381 -17.73449 -17.65001 -17.10542 -16.37382 -16.15765 -16.04827 -15.30061 -14.95025 -14.73179 -14.67295 -14.53145 -14.01844 -13.98466 -13.69323 -13.45776 -13.43189 -13.18851 -12.90378 -12.76496 -12.72277 -12.67438 -12.34728 -12.30421 -12.01460 -11.85040 -11.55584 -11.46009 -11.22384 -10.97665 -10.96048 -10.82139 -10.69448 -10.62342 -9.73505 -9.23745 -8.98287 -8.93391 -8.68518 -8.58363 -8.13250 -6.39747 -6.13657 -3.82879 1.12947 2.20667 2.45924 3.16574 3.28657 3.29903 3.33166 3.38757 3.49857 3.71771 3.91099 4.28806 4.39400 4.49439 4.54445 4.68557 4.72250 4.77579 4.89145 4.94119 4.96067 5.07658 5.15037 5.16996 5.21217 5.28947 5.31953 5.39061 5.45190 5.48423 5.61319 5.65320 5.67327 5.71042 5.75278 5.82275 5.94414 6.03972 6.05823 6.21850 6.30490 6.59255 6.66088 6.87927 7.54830 7.67560 7.97311 8.43471 8.82439 9.31609 10.93743 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.002464 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.288197 B =11360.350625 C =12659.704728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.043 4.043 4 N -0.449 5.449 5 C 0.190 3.810 6 C 0.178 3.822 7 H 0.078 0.922 8 C -0.147 4.147 9 N -0.513 5.513 10 C 0.018 3.982 11 C 0.069 3.931 12 H 0.093 0.907 13 C -0.186 4.186 14 C 0.118 3.882 15 N -0.723 5.723 16 C 0.532 3.468 17 O -0.526 6.526 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 O -0.205 6.205 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.402 0.598 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.918 -11.462 -14.184 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C -0.182 4.182 4 N -0.177 5.177 5 C -0.017 4.017 6 C 0.069 3.931 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.238 5.238 10 C -0.130 4.130 11 C -0.039 4.039 12 H 0.111 0.889 13 C -0.245 4.245 14 C -0.007 4.007 15 N -0.377 5.377 16 C 0.318 3.682 17 O -0.401 6.401 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 O -0.092 6.092 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.200 0.800 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.236 0.764 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.493 -12.033 -12.396 29.162 hybrid contribution -1.332 1.405 -1.849 2.677 sum -24.825 -10.629 -14.245 30.532 Atomic orbital electron populations 1.20255 0.84025 1.04248 1.03806 1.23471 0.94968 0.84684 1.07700 1.23223 0.88003 1.00405 1.06574 1.70546 1.22188 1.08859 1.16144 1.26029 0.83762 0.90515 1.01422 1.20085 0.83862 0.93305 0.95828 0.90432 1.22167 1.01247 1.04595 0.92474 1.62199 1.10321 1.41592 1.09736 1.22546 0.99726 1.00167 0.90533 1.22072 0.91860 0.90062 0.99956 0.88872 1.22413 1.02003 0.97348 1.02724 1.21668 0.95172 0.84665 0.99187 1.45750 1.47645 1.13040 1.31231 1.20232 0.77937 0.89451 0.80586 1.90683 1.58180 1.54135 1.37109 1.23507 1.04379 0.95450 1.06877 1.85336 1.53199 1.15117 1.29897 1.22842 1.32385 0.96933 1.15989 0.91028 1.24981 0.95264 0.98854 0.94526 1.70015 1.29944 1.36591 1.13881 0.86241 0.78419 0.83003 0.77935 1.19959 1.20885 1.19985 1.84365 1.17851 1.36820 1.70166 0.89811 0.88955 0.90508 0.80020 0.92068 0.90466 0.89362 0.95857 0.90560 0.90701 0.90969 0.91366 0.92146 0.91667 0.89980 0.76372 0.89493 0.89208 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.07 16 2 C -0.06 -0.49 7.39 -35.69 -0.26 -0.76 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.45 -5.71 10.12 -11.10 -0.11 -5.82 16 5 C 0.19 2.16 5.47 -12.95 -0.07 2.09 16 6 C 0.18 1.73 2.17 -68.86 -0.15 1.58 16 7 H 0.08 0.63 5.56 -51.93 -0.29 0.34 16 8 C -0.15 -1.59 7.67 37.16 0.29 -1.30 16 9 N -0.51 -4.83 4.20 -228.30 -0.96 -5.79 16 10 C 0.02 0.16 8.81 60.06 0.53 0.69 16 11 C 0.07 0.57 2.36 -67.72 -0.16 0.41 16 12 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 13 C -0.19 -1.19 7.84 37.16 0.29 -0.90 16 14 C 0.12 1.34 4.69 -4.04 -0.02 1.32 16 15 N -0.72 -10.08 5.39 -60.29 -0.32 -10.41 16 16 C 0.53 10.25 7.85 -10.98 -0.09 10.16 16 17 O -0.53 -12.12 15.86 5.56 0.09 -12.03 16 18 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 20 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 24 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 28 O -0.20 -2.21 10.77 5.37 0.06 -2.15 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 34 H 0.08 0.74 5.31 -51.93 -0.28 0.46 16 35 H 0.09 1.21 7.81 -51.93 -0.41 0.80 16 36 H 0.02 0.18 7.53 -51.93 -0.39 -0.21 16 37 H 0.08 0.79 6.05 -51.93 -0.31 0.48 16 38 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.44 5.79 -51.92 -0.30 0.14 16 41 H 0.06 0.36 7.28 -51.93 -0.38 -0.02 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.01 4.27 -51.93 -0.22 0.79 16 44 H 0.40 4.90 8.34 -40.82 -0.34 4.56 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 47 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -36.65 391.25 -7.98 -44.62 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.06 Total: 2.26 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.94 Total: -3.55 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.66 Total: -48.00 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.15 Total: -14.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.65 -7.98 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755294113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.956 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds