Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47702 * 2 1 4 4 C 1.53007 * 109.46780 * 119.99773 * 2 1 3 5 5 N 1.46506 * 109.46911 * 64.99946 * 4 2 1 6 6 C 1.35042 * 126.39348 * 269.99726 * 5 4 2 7 7 N 1.30503 * 108.69729 * 179.76785 * 6 5 4 8 8 C 1.34133 * 109.25485 * 0.38242 * 7 6 5 9 9 S 1.76201 * 125.99012 * 179.88075 * 8 7 6 10 10 O 1.42099 * 106.40110 * 156.14907 * 9 8 7 11 11 O 1.42106 * 106.39815 * 23.23219 * 9 8 7 12 12 N 1.65593 * 107.21893 * 269.69345 * 9 8 7 13 13 C 1.36933 * 120.00184 * 269.99833 * 12 9 8 14 14 H 1.08002 * 120.00066 * 129.81860 * 13 12 9 15 15 C 1.38809 * 119.99985 * 309.82981 * 13 12 9 16 16 N 1.31623 * 120.00084 * 334.77527 * 15 13 12 17 17 Si 1.86802 * 120.00425 * 154.77685 * 15 13 12 18 18 H 1.48503 * 109.47026 * 89.99485 * 17 15 13 19 19 H 1.48491 * 109.47434 * 209.99716 * 17 15 13 20 20 H 1.48500 * 109.46940 * 329.99885 * 17 15 13 21 21 C 1.46503 * 120.00165 * 90.00106 * 12 9 8 22 22 C 1.55241 * 110.46729 * 239.22580 * 21 12 9 23 23 C 1.54889 * 102.58850 * 203.39328 * 22 21 12 24 24 C 1.54271 * 104.31162 * 37.92745 * 23 22 21 25 25 C 1.53872 * 106.60037 * 336.32577 * 24 23 22 26 26 C 1.34667 * 108.01809 * 359.62175 * 8 7 6 27 27 H 1.08996 * 109.47132 * 300.00582 * 1 2 3 28 28 H 1.09002 * 109.46560 * 60.00033 * 1 2 3 29 29 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47132 * 239.99418 * 2 1 3 31 31 H 1.08994 * 109.47623 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46774 * 300.00081 * 3 2 1 33 33 H 1.09008 * 109.46943 * 59.99611 * 3 2 1 34 34 H 1.08997 * 109.46838 * 305.00181 * 4 2 1 35 35 H 1.08996 * 109.47056 * 184.99771 * 4 2 1 36 36 H 1.07995 * 125.65497 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00128 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.43352 * 1.87002 * 21 12 9 39 39 H 1.08999 * 110.90326 * 85.10243 * 22 21 12 40 40 H 1.08998 * 110.76518 * 321.61933 * 22 21 12 41 41 H 1.09004 * 110.48600 * 279.19086 * 23 22 21 42 42 H 1.08995 * 110.49187 * 156.67308 * 23 22 21 43 43 H 1.09000 * 110.03204 * 95.61213 * 24 23 22 44 44 H 1.08997 * 110.03354 * 216.98924 * 24 23 22 45 45 H 1.09001 * 110.03103 * 119.28321 * 25 24 23 46 46 H 1.09000 * 110.03676 * 240.66409 * 25 24 23 47 47 H 1.07999 * 126.59236 * 180.20718 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1329 1.1907 6 6 0.5114 -2.6712 1.6727 7 7 0.5192 -3.9536 1.4309 8 6 1.6575 -4.2779 0.7998 9 16 2.1239 -5.8922 0.2697 10 8 3.0539 -5.7136 -0.7897 11 8 0.9188 -6.6322 0.1295 12 7 2.9614 -6.5939 1.5141 13 6 4.3207 -6.4482 1.5925 14 1 4.7768 -6.1258 2.5169 15 6 5.1123 -6.7147 0.4839 16 7 4.6868 -7.5450 -0.4445 17 14 6.7818 -5.8949 0.3095 18 1 7.8198 -6.7456 0.9454 19 1 7.0993 -5.7198 -1.1305 20 1 6.7535 -4.5678 0.9751 21 6 2.2480 -7.3706 2.5311 22 6 2.4771 -6.7601 3.9399 23 6 2.2126 -7.9648 4.8769 24 6 2.8127 -9.1712 4.1256 25 6 2.8352 -8.7934 2.6341 26 6 2.3788 -3.1523 0.6372 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6052 -0.2617 2.1370 35 1 3.1262 -0.6444 1.2953 36 1 -0.2785 -2.1295 2.1715 37 1 5.2402 -7.7315 -1.2190 38 1 1.1836 -7.4129 2.3003 39 1 1.7679 -5.9558 4.1353 40 1 3.5027 -6.4064 4.0457 41 1 1.1419 -8.1032 5.0272 42 1 2.7158 -7.8221 5.8331 43 1 3.8262 -9.3636 4.4774 44 1 2.1909 -10.0533 4.2787 45 1 3.8597 -8.8023 2.2622 46 1 2.2246 -9.4924 2.0625 47 1 3.3450 -3.0699 0.1618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175023770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = -23.007720 kcal Electronic energy + Delta-G solvation = -29484.134467 eV Core-core repulsion = 25601.668384 eV Total energy + Delta-G solvation = -3882.466083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.67162 -37.64555 -36.76127 -35.43158 -34.07266 -33.79523 -32.43777 -31.27101 -29.18665 -27.83373 -27.48839 -26.66679 -26.49415 -24.14001 -21.65175 -21.11723 -20.32936 -19.86463 -19.26702 -18.59376 -17.73086 -16.28701 -15.82049 -15.52221 -15.22585 -15.13540 -14.75855 -14.56383 -14.32847 -14.01025 -13.61380 -13.54266 -13.34089 -13.02071 -12.68749 -12.62209 -12.51366 -12.30892 -11.92748 -11.73161 -11.57266 -11.34852 -11.32202 -11.09875 -10.99373 -10.64854 -10.51214 -10.32620 -10.28288 -10.26435 -10.16940 -10.10103 -10.01580 -9.63496 -9.46925 -9.36186 -9.31797 -8.61097 -8.29037 -7.47909 -6.41553 -4.04300 2.10843 2.31516 2.98885 3.24243 3.29909 3.33403 3.34316 4.21943 4.36820 4.45497 4.66644 4.85937 4.92487 4.98691 5.03344 5.11761 5.20022 5.30544 5.32096 5.41996 5.44672 5.50044 5.56352 5.57423 5.67203 5.75038 5.80699 5.94075 5.97440 6.24696 6.26209 6.30368 6.36647 6.39643 6.47295 6.58256 6.62681 6.67701 6.81704 6.86096 7.03457 7.13975 7.32538 7.48663 7.54103 7.80764 8.35814 8.38483 9.04599 9.50381 10.64988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.004639 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.929362 B = 6034.535354 C = 7110.255036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.106 3.894 5 N -0.461 5.461 6 C 0.159 3.841 7 N -0.422 5.422 8 C -0.534 4.534 9 S 2.599 3.401 10 O -0.952 6.952 11 O -1.002 7.002 12 N -0.808 5.808 13 C -0.286 4.286 14 H 0.079 0.921 15 C 0.065 3.935 16 N -0.781 5.781 17 Si 0.913 3.087 18 H -0.278 1.278 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.158 3.842 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.121 4.121 26 C 0.048 3.952 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.199 0.801 37 H 0.277 0.723 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 12.536 6.018 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C -0.202 4.202 4 C -0.017 4.017 5 N -0.144 5.144 6 C -0.125 4.125 7 N -0.139 5.139 8 C -0.736 4.736 9 S 2.694 3.306 10 O -0.940 6.940 11 O -0.992 6.992 12 N -0.633 5.633 13 C -0.431 4.431 14 H 0.097 0.903 15 C -0.153 4.153 16 N -0.416 5.416 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.205 1.205 20 H -0.193 1.193 21 C 0.049 3.951 22 C -0.173 4.173 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.160 4.160 26 C -0.089 4.089 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.216 0.784 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.172 11.830 5.158 13.290 hybrid contribution 1.282 1.846 -0.013 2.247 sum -1.890 13.676 5.145 14.734 Atomic orbital electron populations 1.21912 0.94446 1.02647 1.01998 1.21532 0.97080 0.96676 0.98169 1.21770 1.01256 0.94806 1.02331 1.22008 1.01811 0.78405 0.99437 1.45754 1.17013 1.07847 1.43742 1.25104 0.91139 0.91467 1.04829 1.70351 1.19255 1.10903 1.13405 1.35414 0.98745 1.24503 1.14957 1.09009 0.72346 0.72246 0.77043 1.93425 1.61248 1.85572 1.53731 1.93312 1.48999 1.69979 1.86875 1.52737 1.12878 1.53400 1.44242 1.18797 0.79906 1.44785 0.99656 0.90340 1.25630 0.99402 0.93739 0.96481 1.69890 1.38034 1.24624 1.09033 0.86190 0.81852 0.80146 0.77938 1.20394 1.20487 1.19278 1.21571 0.95385 0.90597 0.87508 1.22898 1.02011 0.96642 0.95711 1.22277 0.99927 0.95945 0.97857 1.22081 0.99987 0.97128 0.96526 1.22346 1.03824 0.95682 0.94186 1.22655 0.98949 0.86555 1.00735 0.92461 0.92263 0.91966 0.90240 0.92247 0.91990 0.92343 0.88970 0.88956 0.78410 0.91246 0.90029 0.92740 0.90514 0.92371 0.92702 0.92431 0.92987 0.88899 0.92877 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.89 37.16 0.33 -1.09 16 2 C -0.12 -1.07 3.13 -90.62 -0.28 -1.35 16 3 C -0.14 -0.99 9.19 37.16 0.34 -0.65 16 4 C 0.11 1.07 5.58 -4.03 -0.02 1.05 16 5 N -0.46 -6.97 2.57 -118.57 -0.31 -7.28 16 6 C 0.16 2.60 10.86 -90.37 -0.98 1.61 16 7 N -0.42 -9.08 11.25 -13.86 -0.16 -9.24 16 8 C -0.53 -12.15 7.13 -17.81 -0.13 -12.27 16 9 S 2.60 68.37 5.61 -107.50 -0.60 67.77 16 10 O -0.95 -26.86 14.04 -57.17 -0.80 -27.66 16 11 O -1.00 -29.02 16.60 -57.17 -0.95 -29.97 16 12 N -0.81 -19.92 2.73 -51.64 -0.14 -20.06 16 13 C -0.29 -7.03 7.44 -15.06 -0.11 -7.14 16 14 H 0.08 1.83 6.85 -52.49 -0.36 1.47 16 15 C 0.07 1.66 3.99 -17.43 -0.07 1.59 16 16 N -0.78 -21.33 11.74 55.49 0.65 -20.67 16 17 Si 0.91 19.69 29.62 -169.99 -5.04 14.66 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C 0.16 3.48 3.27 -66.08 -0.22 3.27 16 22 C -0.13 -2.50 6.46 -24.55 -0.16 -2.66 16 23 C -0.12 -1.93 6.82 -25.07 -0.17 -2.10 16 24 C -0.12 -1.96 6.80 -25.61 -0.17 -2.13 16 25 C -0.12 -2.48 6.41 -25.62 -0.16 -2.65 16 26 C 0.05 0.92 11.31 -16.56 -0.19 0.73 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.72 6.50 -51.93 -0.34 0.39 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 37 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.90 6.96 -51.93 -0.36 1.54 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 2.10 6.95 -51.93 -0.36 1.74 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.18 3.26 8.06 -52.49 -0.42 2.83 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -33.66 385.07 -11.20 -44.86 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.66 Total: 5.59 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -2.00 Total: -23.79 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.05 Total: -57.25 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -1.75 Total: -57.63 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.04 Total: 14.66 kcal Atomic # 16 Polarization: 68.37 SS G_CDS: -0.60 Total: 67.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.66 -11.20 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175023770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.851 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds