Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47574 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47233 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47017 * 179.97438 * 19 18 17 21 21 O 1.20832 * 120.00247 * 0.02562 * 20 19 18 22 22 O 1.34222 * 119.99985 * 180.02562 * 20 19 18 23 23 C 1.45208 * 116.99948 * 180.02562 * 22 20 19 24 24 C 1.52995 * 109.47365 * 59.99846 * 23 22 20 25 25 C 1.53003 * 109.46845 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.46664 * 299.99335 * 23 22 20 27 27 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 29 29 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 32 32 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 33 33 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 34 34 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 35 35 H 1.08994 * 109.47070 * 300.00446 * 18 17 16 36 36 H 1.09006 * 109.46700 * 59.99768 * 18 17 16 37 37 H 1.08990 * 109.47323 * 300.00348 * 19 18 17 38 38 H 1.09002 * 109.46644 * 60.00508 * 19 18 17 39 39 H 1.08994 * 109.47446 * 60.00186 * 24 23 22 40 40 H 1.08998 * 109.46963 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47068 * 299.99890 * 24 23 22 42 42 H 1.09000 * 109.47419 * 59.99738 * 25 23 22 43 43 H 1.09000 * 109.47016 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.47176 * 299.99330 * 25 23 22 45 45 H 1.09000 * 109.47051 * 60.00549 * 26 23 22 46 46 H 1.09000 * 109.46723 * 180.02562 * 26 23 22 47 47 H 1.09000 * 109.47481 * 300.00189 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 6 4.5845 -5.7912 0.0043 19 6 4.3949 -7.3094 0.0032 20 6 5.7425 -7.9839 0.0083 21 8 6.7511 -7.3186 0.0129 22 8 5.8223 -9.3238 0.0078 23 6 7.1530 -9.9048 0.0135 24 6 7.9034 -9.4488 1.2664 25 6 7.0431 -11.4309 0.0126 26 6 7.9146 -9.4472 -1.2321 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.5753 4.9451 0.0298 31 1 3.9654 -3.2905 -0.8867 32 1 3.9562 -3.2921 0.8932 33 1 2.6570 -5.4037 0.8856 34 1 2.6659 -5.4028 -0.8945 35 1 5.1434 -5.4938 -0.8829 36 1 5.1353 -5.4948 0.8970 37 1 3.8361 -7.6064 0.8906 38 1 3.8439 -7.6060 -0.8893 39 1 7.3609 -9.7749 2.1537 40 1 8.9024 -9.8847 1.2703 41 1 7.9817 -8.3616 1.2674 42 1 6.5084 -11.7562 -0.8798 43 1 8.0420 -11.8671 0.0164 44 1 6.5007 -11.7566 0.9001 45 1 7.9929 -8.3600 -1.2311 46 1 8.9133 -9.8838 -1.2281 47 1 7.3800 -9.7721 -2.1247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279989596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -74.137285 kcal Electronic energy + Delta-G solvation = -26318.959306 eV Core-core repulsion = 22434.276079 eV Total energy + Delta-G solvation = -3884.683227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.84703 -41.83084 -38.31718 -36.42744 -35.94327 -35.39580 -35.04310 -32.07551 -31.66843 -28.45448 -28.39459 -28.29784 -27.36795 -26.30433 -23.45927 -23.10196 -22.12344 -21.68857 -20.54896 -20.20129 -18.34091 -18.03208 -17.47543 -17.40625 -17.03638 -16.89648 -16.36537 -15.98984 -15.69269 -15.37597 -15.29014 -15.04768 -14.71021 -14.57098 -14.44192 -14.18658 -13.80770 -13.58774 -13.37673 -13.16332 -13.11555 -12.95127 -12.90934 -12.86192 -12.64098 -12.58064 -12.32798 -12.31464 -12.10678 -11.94530 -11.63966 -11.60028 -11.49672 -11.39791 -11.37552 -10.94939 -10.90260 -10.56873 -10.37552 -9.50234 -8.66943 -6.87015 0.33909 0.97781 1.21529 1.26479 1.52360 1.58686 1.75853 1.91924 2.11444 2.21074 2.40655 3.03052 3.63662 3.70503 3.76302 3.78643 3.90854 3.93508 3.95604 4.23010 4.24692 4.33858 4.41897 4.47788 4.55980 4.58233 4.59261 4.66644 4.70477 4.73376 4.74782 4.75827 4.81937 4.87412 4.96559 5.02294 5.12551 5.21922 5.22414 5.24725 5.29509 5.36049 5.36692 5.61799 5.69229 5.99545 6.38174 6.56321 6.86622 7.91490 8.15116 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.001823 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.211774 B =15357.269420 C =16455.010927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.516 5.516 3 C 0.324 3.676 4 C -0.509 4.509 5 H 0.085 0.915 6 C 0.043 3.957 7 N -0.822 5.822 8 Si 1.145 2.855 9 H -0.296 1.296 10 H -0.279 1.279 11 H -0.296 1.296 12 N -0.450 5.450 13 N -0.314 5.314 14 C 0.080 3.920 15 S 0.005 5.995 16 C -0.096 4.096 17 C -0.090 4.090 18 C -0.098 4.098 19 C -0.107 4.107 20 C 0.457 3.543 21 O -0.532 6.532 22 O -0.356 6.356 23 C 0.105 3.895 24 C -0.181 4.181 25 C -0.136 4.136 26 C -0.181 4.181 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.287 0.713 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -32.079 -0.060 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.216 5.216 3 C 0.076 3.924 4 C -0.550 4.550 5 H 0.103 0.897 6 C -0.177 4.177 7 N -0.447 5.447 8 Si 0.974 3.026 9 H -0.225 1.225 10 H -0.206 1.206 11 H -0.224 1.224 12 N -0.299 5.299 13 N -0.156 5.156 14 C -0.295 4.295 15 S 0.232 5.768 16 C -0.245 4.245 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.144 4.144 20 C 0.302 3.698 21 O -0.422 6.422 22 O -0.274 6.274 23 C 0.070 3.930 24 C -0.238 4.238 25 C -0.193 4.193 26 C -0.238 4.238 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.632 -31.697 -0.175 31.806 hybrid contribution -1.608 0.853 0.192 1.831 sum 1.023 -30.843 0.017 30.860 Atomic orbital electron populations 1.21916 0.74570 1.04673 1.03781 1.46228 1.08450 1.04155 1.62746 1.21816 0.85746 0.89998 0.94796 1.19402 0.97474 0.87563 1.50597 0.89720 1.27698 1.09556 0.91541 0.88895 1.70662 1.21894 1.18378 1.33774 0.82211 0.69849 0.71774 0.78775 1.22510 1.20629 1.22369 1.73858 1.17166 1.02331 1.36499 1.74199 1.17353 1.04819 1.19236 1.26705 0.90180 0.96309 1.16318 1.84267 1.12352 0.85705 1.94431 1.23521 0.95717 0.99405 1.05864 1.21311 0.97796 0.88613 1.05239 1.21291 0.96642 0.92667 1.03178 1.21489 0.90882 0.93870 1.08201 1.24269 0.93300 0.80891 0.71297 1.90616 1.39207 1.66185 1.46184 1.86550 1.34781 1.22433 1.83635 1.22441 0.79274 0.95143 0.96167 1.22458 1.01658 1.02869 0.96815 1.21862 1.04235 0.89468 1.03722 1.22460 1.01594 1.02865 0.96882 0.90290 0.88077 0.89952 0.90209 0.90402 0.90415 0.88812 0.88821 0.92010 0.92019 0.85192 0.85202 0.91591 0.89541 0.92312 0.91097 0.88701 0.91090 0.92301 0.89542 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.07 10.89 127.77 1.39 4.46 16 2 N -0.52 -23.57 3.26 -543.63 -1.77 -25.34 16 3 C 0.32 17.64 7.27 133.23 0.97 18.60 16 4 C -0.51 -27.97 9.50 23.09 0.22 -27.75 16 5 H 0.08 4.48 7.46 -2.91 -0.02 4.46 16 6 C 0.04 2.40 5.52 85.29 0.47 2.87 16 7 N -0.82 -44.77 13.65 21.86 0.30 -44.48 16 8 Si 1.14 59.51 25.90 68.60 1.78 61.29 16 9 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 10 H -0.28 -15.25 6.76 99.48 0.67 -14.58 16 11 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 12 N -0.45 -25.88 7.52 -55.02 -0.41 -26.29 16 13 N -0.31 -16.45 11.62 -56.17 -0.65 -17.11 16 14 C 0.08 3.55 8.09 179.18 1.45 5.00 16 15 S 0.01 0.16 21.79 -56.49 -1.23 -1.07 16 16 C -0.10 -2.53 5.22 71.98 0.38 -2.16 16 17 C -0.09 -1.45 5.22 30.59 0.16 -1.29 16 18 C -0.10 -1.63 4.50 30.59 0.14 -1.49 16 19 C -0.11 -1.25 5.81 29.85 0.17 -1.07 16 20 C 0.46 8.37 7.27 71.24 0.52 8.89 16 21 O -0.53 -13.17 11.48 21.95 0.25 -12.92 16 22 O -0.36 -5.97 9.89 -51.34 -0.51 -6.48 16 23 C 0.11 1.52 1.13 -10.79 -0.01 1.51 16 24 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 25 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 26 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 28 H 0.10 2.71 7.85 -2.39 -0.02 2.69 16 29 H 0.08 2.69 7.48 -2.39 -0.02 2.67 16 30 H 0.29 14.82 8.72 -92.71 -0.81 14.01 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 2.32 8.14 -2.40 -0.02 2.30 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 37 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.22 5.89 -2.39 -0.01 1.20 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 1.22 5.89 -2.39 -0.01 1.21 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -74.33 395.56 6.33 -68.01 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 0.88 Total: 1.59 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 7.69 Total: 2.80 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -2.54 Total: -113.22 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.26 Total: -19.40 kcal Atomic # 14 Polarization: 59.51 SS G_CDS: 1.78 Total: 61.29 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.23 Total: -1.07 kcal Total: -74.33 6.33 -68.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279989596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.131 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds