Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.09003 * 109.47107 * 55.00131 * 3 2 1 5 5 C 1.50702 * 109.47477 * 174.99828 * 3 2 1 6 6 C 1.38644 * 120.78851 * 65.44389 * 5 3 2 7 7 C 1.38202 * 119.16195 * 179.75651 * 6 5 3 8 8 N 1.31867 * 120.76681 * 0.52839 * 7 6 5 9 9 C 1.31874 * 121.72173 * 359.74415 * 8 7 6 10 10 C 1.38203 * 120.76638 * 359.97438 * 9 8 7 11 11 N 1.46497 * 109.47083 * 295.00160 * 3 2 1 12 12 C 1.46498 * 120.00199 * 305.93153 * 11 3 2 13 13 S 1.65607 * 120.00010 * 125.93209 * 11 3 2 14 14 O 1.42093 * 106.40197 * 336.45824 * 13 11 3 15 15 O 1.42098 * 106.39968 * 203.53844 * 13 11 3 16 16 N 1.65600 * 107.21704 * 90.00111 * 13 11 3 17 17 C 1.46501 * 119.99670 * 269.72299 * 16 13 11 18 18 C 1.46495 * 120.00044 * 90.00164 * 16 13 11 19 19 H 1.09006 * 109.47140 * 359.71854 * 18 16 13 20 20 C 1.53007 * 109.46967 * 239.72258 * 18 16 13 21 21 C 1.50701 * 109.47535 * 119.72432 * 18 16 13 22 22 H 1.07999 * 119.99733 * 35.00609 * 21 18 16 23 23 C 1.37874 * 119.99818 * 215.01734 * 21 18 16 24 24 N 1.31523 * 119.99629 * 184.89109 * 23 21 18 25 25 Si 1.86800 * 120.00582 * 4.88892 * 23 21 18 26 26 H 1.48501 * 109.46940 * 84.79579 * 25 23 21 27 27 H 1.48497 * 109.47305 * 204.80050 * 25 23 21 28 28 H 1.48500 * 109.46744 * 324.79990 * 25 23 21 29 29 H 1.08997 * 109.47511 * 60.00182 * 1 2 3 30 30 H 1.09004 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46973 * 299.99876 * 1 2 3 32 32 H 1.08999 * 109.47699 * 239.99962 * 2 1 3 33 33 H 1.09005 * 109.47159 * 119.99793 * 2 1 3 34 34 H 1.08002 * 120.41987 * 0.02562 * 6 5 3 35 35 H 1.08007 * 119.61652 * 180.24946 * 7 6 5 36 36 H 1.08005 * 119.61794 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.42354 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47131 * 274.59368 * 12 11 3 39 39 H 1.09002 * 109.46684 * 34.58587 * 12 11 3 40 40 H 1.08998 * 109.47733 * 154.58935 * 12 11 3 41 41 H 1.09004 * 109.46860 * 270.27329 * 17 16 13 42 42 H 1.08997 * 109.47369 * 30.27685 * 17 16 13 43 43 H 1.09004 * 109.46835 * 150.28182 * 17 16 13 44 44 H 1.09001 * 109.46895 * 54.83773 * 20 18 16 45 45 H 1.09007 * 109.47121 * 174.83277 * 20 18 16 46 46 H 1.08998 * 109.46941 * 294.83658 * 20 18 16 47 47 H 0.97002 * 119.99889 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 6 4.3376 0.9189 -0.8826 7 6 5.7117 0.9426 -0.7362 8 7 6.2659 1.4472 0.3487 9 6 5.5403 1.9503 1.3281 10 6 4.1606 1.9663 1.2496 11 7 1.6524 2.0974 -1.2518 12 6 2.0035 1.4878 -2.5368 13 16 0.8174 3.5271 -1.2142 14 8 0.1629 3.5765 0.0460 15 8 0.1271 3.6211 -2.4527 16 7 1.9360 4.7481 -1.2086 17 6 2.4445 5.2697 0.0625 18 6 2.4126 5.3109 -2.4744 19 1 1.9258 4.8000 -3.3052 20 6 3.9276 5.1234 -2.5776 21 6 2.0836 6.7806 -2.5263 22 1 2.1143 7.3730 -1.6238 23 6 1.7432 7.3689 -3.7259 24 7 1.5500 8.6683 -3.7896 25 14 1.5563 6.3205 -5.2606 26 1 0.1850 5.7525 -5.3081 27 1 1.7867 7.1593 -6.4642 28 1 2.5487 5.2162 -5.2295 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8896 0.5005 -1.7717 35 1 6.3387 0.5389 -1.5176 36 1 6.0298 2.3546 2.2019 37 1 3.5717 2.3801 2.0548 38 1 3.0116 1.7910 -2.8194 39 1 1.9624 0.4023 -2.4471 40 1 1.2979 1.8164 -3.2998 41 1 1.8101 6.0899 0.3985 42 1 2.4383 4.4760 0.8095 43 1 3.4636 5.6314 -0.0748 44 1 4.1729 4.0693 -2.4482 45 1 4.2693 5.4584 -3.5570 46 1 4.4198 5.7090 -1.8011 47 1 1.3109 9.0822 -4.6337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283080711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -31.452760 kcal Electronic energy + Delta-G solvation = -30402.739522 eV Core-core repulsion = 26519.907235 eV Total energy + Delta-G solvation = -3882.832287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.47777 -37.69357 -36.87101 -36.33058 -35.34822 -32.80525 -32.48947 -32.13698 -31.30133 -29.96418 -27.77116 -25.79871 -25.48828 -25.12649 -23.50408 -22.80953 -20.97329 -20.53219 -18.65220 -17.63017 -17.46473 -16.99394 -16.48653 -16.24355 -16.00550 -15.54881 -15.07663 -14.80607 -14.28085 -14.00357 -13.84728 -13.80771 -13.55278 -13.30661 -13.14605 -12.72087 -12.61538 -12.54189 -12.51418 -12.05311 -11.95749 -11.86512 -11.79659 -11.64717 -11.43172 -11.26863 -11.22636 -11.10908 -10.98916 -10.92501 -10.66120 -10.36326 -9.83586 -9.70314 -9.68915 -9.38080 -9.24054 -9.00436 -8.61664 -8.08800 -6.18588 -4.18907 0.91264 1.04784 1.19760 3.22687 3.29889 3.33863 3.42117 3.73206 3.91490 4.27813 4.35615 4.37140 4.54664 4.70508 4.79643 4.88485 4.98454 5.04092 5.07408 5.14137 5.22587 5.36802 5.42971 5.48303 5.50629 5.60868 5.65108 5.73977 5.77369 5.85045 5.89476 5.95882 5.98914 6.13530 6.15689 6.27945 6.33012 6.37506 6.50171 6.52333 6.58829 6.62603 6.90591 7.17829 7.46000 7.63172 7.87691 8.41728 8.86503 9.42839 10.93448 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.005159 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.692710 B = 5426.415174 C = 6256.922539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C 0.186 3.814 4 H 0.111 0.889 5 C -0.047 4.047 6 C -0.160 4.160 7 C 0.097 3.903 8 N -0.487 5.487 9 C 0.100 3.900 10 C -0.164 4.164 11 N -1.004 6.004 12 C 0.076 3.924 13 S 2.766 3.234 14 O -0.988 6.988 15 O -0.972 6.972 16 N -0.982 5.982 17 C 0.111 3.889 18 C 0.236 3.764 19 H 0.055 0.945 20 C -0.144 4.144 21 C -0.516 4.516 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.888 5.888 25 Si 0.866 3.134 26 H -0.264 1.264 27 H -0.286 1.286 28 H -0.264 1.264 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -18.870 7.790 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.079 3.921 4 H 0.129 0.871 5 C -0.057 4.057 6 C -0.180 4.180 7 C -0.059 4.059 8 N -0.196 5.196 9 C -0.057 4.057 10 C -0.184 4.184 11 N -0.840 5.840 12 C -0.070 4.070 13 S 2.778 3.222 14 O -0.971 6.971 15 O -0.956 6.956 16 N -0.824 5.824 17 C -0.035 4.035 18 C 0.133 3.867 19 H 0.072 0.928 20 C -0.204 4.204 21 C -0.556 4.556 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.525 5.525 25 Si 0.692 3.308 26 H -0.189 1.189 27 H -0.212 1.212 28 H -0.189 1.189 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.896 -18.637 7.742 20.767 hybrid contribution -0.549 -0.324 -1.017 1.200 sum 4.347 -18.962 6.725 20.583 Atomic orbital electron populations 1.21777 0.94902 1.01731 1.02792 1.21804 0.96827 0.94783 1.02789 1.19859 0.89207 0.95610 0.87402 0.87123 1.20634 0.96363 0.94865 0.93809 1.22202 0.94926 1.00968 0.99925 1.22727 0.92648 0.95495 0.95073 1.67656 1.41157 1.09368 1.01436 1.22713 0.90732 0.95294 0.96944 1.22086 0.96422 1.01061 0.98845 1.58271 1.74618 1.40821 1.10326 1.21715 1.01536 0.99242 0.84464 1.02552 0.74204 0.72335 0.73142 1.93524 1.72929 1.86622 1.44073 1.93581 1.70916 1.85878 1.45221 1.57968 1.62192 1.49186 1.13077 1.21137 1.00454 0.98404 0.83488 1.19097 0.91307 0.95681 0.80617 0.92753 1.22214 0.98766 0.97976 1.01448 1.21135 1.46861 0.91180 0.96435 0.90054 1.24996 0.93944 0.94868 0.98798 1.69889 1.46323 1.09518 1.26754 0.87025 0.80294 0.80674 0.82788 1.18934 1.21186 1.18878 0.92586 0.92390 0.91973 0.90995 0.90757 0.84433 0.83014 0.82826 0.84664 0.92455 0.90893 0.89620 0.92795 0.93495 0.91208 0.95688 0.92761 0.92899 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.80 37.15 0.36 -1.19 16 2 C -0.12 -1.12 5.07 -26.74 -0.14 -1.26 16 3 C 0.19 2.12 2.40 -69.08 -0.17 1.96 16 4 H 0.11 1.34 6.65 -51.93 -0.35 0.99 16 5 C -0.05 -0.51 4.98 -104.32 -0.52 -1.03 16 6 C -0.16 -1.64 8.33 -39.44 -0.33 -1.97 16 7 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 8 N -0.49 -5.89 10.36 -13.25 -0.14 -6.02 16 9 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 10 C -0.16 -1.68 9.76 -39.44 -0.39 -2.07 16 11 N -1.00 -13.93 2.57 -115.86 -0.30 -14.23 16 12 C 0.08 0.90 8.63 59.85 0.52 1.41 16 13 S 2.77 52.77 6.07 -107.50 -0.65 52.12 16 14 O -0.99 -19.61 15.73 -57.17 -0.90 -20.51 16 15 O -0.97 -21.97 15.26 -57.17 -0.87 -22.84 16 16 N -0.98 -19.73 3.12 -115.85 -0.36 -20.09 16 17 C 0.11 1.94 9.38 59.85 0.56 2.51 16 18 C 0.24 5.40 2.28 -69.08 -0.16 5.24 16 19 H 0.05 1.31 4.07 -51.93 -0.21 1.10 16 20 C -0.14 -2.87 9.04 37.16 0.34 -2.53 16 21 C -0.52 -14.05 8.82 -34.44 -0.30 -14.36 16 22 H 0.08 2.37 7.67 -52.49 -0.40 1.97 16 23 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 24 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 25 Si 0.87 21.55 26.99 -169.99 -4.59 16.96 16 26 H -0.26 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.26 -6.08 6.82 56.52 0.39 -5.69 16 29 H 0.06 0.65 7.75 -51.93 -0.40 0.24 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.58 6.20 -51.93 -0.32 0.26 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.14 1.18 5.27 -52.49 -0.28 0.91 16 35 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.14 1.14 8.01 -52.49 -0.42 0.72 16 38 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 39 H 0.07 0.63 5.65 -51.93 -0.29 0.34 16 40 H 0.09 1.14 6.92 -51.93 -0.36 0.78 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 43 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.03 6.88 -51.93 -0.36 0.67 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -33.82 380.88 -9.02 -42.84 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.02 Total: 1.28 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.71 Total: -9.45 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.02 Total: -66.14 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.77 Total: -43.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.96 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -0.65 Total: 52.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.82 -9.02 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283080711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.390 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds