Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40293 * 126.09217 * 2 1 4 4 C 1.31069 * 108.27182 * 180.02562 * 3 2 1 5 5 C 1.39301 * 108.07458 * 359.97438 * 4 3 2 6 6 C 1.34322 * 126.09127 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03273 * 359.88883 * 6 2 1 8 8 C 1.53367 * 108.38568 * 196.60661 * 7 6 2 9 9 C 1.53107 * 109.51292 * 310.07198 * 8 7 6 10 10 C 1.50847 * 127.89818 * 179.90953 * 5 4 3 11 11 H 1.09002 * 109.68233 * 76.88650 * 10 5 4 12 12 N 1.46502 * 109.67979 * 316.36794 * 10 5 4 13 13 S 1.65601 * 119.99848 * 95.00346 * 12 10 5 14 14 O 1.42096 * 104.27636 * 181.06787 * 13 12 10 15 15 O 1.42109 * 104.27672 * 308.92359 * 13 12 10 16 16 C 1.81398 * 104.45262 * 64.99703 * 13 12 10 17 17 C 1.52998 * 109.47115 * 179.97438 * 16 13 12 18 18 C 1.52992 * 109.47340 * 299.99891 * 17 16 13 19 19 C 1.53001 * 109.47157 * 60.00188 * 17 16 13 20 20 C 1.50707 * 109.46870 * 179.97438 * 17 16 13 21 21 H 1.08001 * 119.99774 * 359.97438 * 20 17 16 22 22 C 1.37875 * 119.99924 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99934 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00222 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46964 * 59.99513 * 24 22 20 26 26 H 1.48495 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46874 * 299.99845 * 24 22 20 28 28 H 1.08996 * 109.47267 * 270.00612 * 1 2 3 29 29 H 1.09006 * 109.46904 * 30.00576 * 1 2 3 30 30 H 1.09000 * 109.47350 * 149.99847 * 1 2 3 31 31 H 1.08000 * 125.96768 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.68386 * 76.88448 * 7 6 2 33 33 H 1.09000 * 109.71359 * 316.34788 * 7 6 2 34 34 H 1.09000 * 109.45943 * 70.08127 * 8 7 6 35 35 H 1.08998 * 109.46714 * 190.05628 * 8 7 6 36 36 H 1.08998 * 109.46090 * 190.27410 * 9 8 7 37 37 H 1.08997 * 109.46457 * 310.24508 * 9 8 7 38 38 H 0.96998 * 120.00161 * 274.99702 * 12 10 5 39 39 H 1.08999 * 109.46838 * 299.99855 * 16 13 12 40 40 H 1.08993 * 109.46969 * 59.99661 * 16 13 12 41 41 H 1.09000 * 109.47425 * 60.00139 * 18 17 16 42 42 H 1.08997 * 109.47599 * 180.02562 * 18 17 16 43 43 H 1.09008 * 109.47355 * 300.00254 * 18 17 16 44 44 H 1.08999 * 109.47468 * 59.99671 * 19 17 16 45 45 H 1.08993 * 109.47142 * 179.97438 * 19 17 16 46 46 H 1.08996 * 109.46986 * 299.99860 * 19 17 16 47 47 H 0.97001 * 120.00167 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5454 -0.6605 -0.0003 6 6 2.2563 -1.0854 0.0005 7 6 1.8437 -2.5362 0.0034 8 6 3.0535 -3.3823 0.4188 9 6 4.2702 -2.9812 -0.4195 10 6 4.7399 -1.5818 -0.0027 11 1 5.1749 -1.6214 0.9960 12 7 5.7383 -1.0927 -0.9567 13 16 6.9816 -0.1315 -0.4342 14 8 7.7171 0.1621 -1.6140 15 8 6.3409 0.8991 0.3053 16 6 7.9473 -1.2001 0.6685 17 6 9.1396 -0.4172 1.2220 18 6 10.0230 0.0524 0.0645 19 6 8.6339 0.7974 2.0030 20 6 9.9416 -1.3048 2.1386 21 1 9.6315 -2.3251 2.3096 22 6 11.0704 -0.8140 2.7597 23 7 11.4476 0.4287 2.5519 24 14 12.0649 -1.9144 3.8953 25 1 12.5562 -3.0930 3.1372 26 1 13.2220 -1.1544 4.4326 27 1 11.2072 -2.3707 5.0184 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4106 1.3706 -0.0011 32 1 1.5177 -2.8272 -0.9951 33 1 1.0301 -2.6856 0.7133 34 1 3.2685 -3.2149 1.4742 35 1 2.8321 -4.4371 0.2562 36 1 5.0753 -3.6977 -0.2570 37 1 3.9978 -2.9744 -1.4749 38 1 5.6713 -1.3319 -1.8943 39 1 7.3178 -1.5350 1.4929 40 1 8.3079 -2.0652 0.1121 41 1 9.4428 0.6946 -0.5981 42 1 10.8727 0.6098 0.4588 43 1 10.3833 -0.8129 -0.4919 44 1 8.0045 0.4629 2.8276 45 1 9.4832 1.3549 2.3976 46 1 8.0536 1.4395 1.3404 47 1 12.2420 0.7739 2.9885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295235942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -1.530917 kcal Electronic energy + Delta-G solvation = -29291.093058 eV Core-core repulsion = 25409.558280 eV Total energy + Delta-G solvation = -3881.534779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51578 -37.34553 -36.46494 -36.24337 -35.28683 -34.42421 -32.88054 -31.64662 -29.60522 -28.53680 -26.68655 -26.57121 -25.68152 -25.20599 -23.25394 -22.09669 -20.80462 -19.65180 -18.83881 -18.65177 -17.26327 -17.11626 -16.07424 -15.92616 -15.46492 -15.25614 -14.81193 -14.72835 -14.49821 -14.09251 -13.87928 -13.82691 -13.22687 -13.10418 -12.97849 -12.93617 -12.65079 -12.46407 -12.10583 -12.08893 -11.84909 -11.36608 -11.29483 -11.23975 -11.10291 -11.01904 -10.93272 -10.75209 -10.63370 -10.54943 -10.36595 -10.22959 -10.08881 -9.63273 -9.61338 -9.26426 -9.18188 -8.65655 -8.37855 -8.26082 -6.01367 -4.13489 0.90138 1.85354 2.50292 2.89160 3.28027 3.32043 3.33772 3.35063 4.28975 4.31817 4.38130 4.43720 4.57837 4.66366 4.80889 4.85667 4.92370 5.07155 5.12602 5.17793 5.23053 5.24287 5.36788 5.43854 5.54114 5.61837 5.71322 5.74928 5.87490 5.92493 6.06706 6.18662 6.28367 6.41396 6.73476 6.83013 6.89645 6.94238 7.01140 7.06888 7.23333 7.35083 7.53728 7.69789 7.81830 8.01363 8.12190 8.35452 8.84769 9.51821 10.99838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.003289 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.187431 B = 8512.345559 C = 8947.705285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.376 5.376 3 N -0.309 5.309 4 C 0.074 3.926 5 C -0.254 4.254 6 C 0.086 3.914 7 C -0.055 4.055 8 C -0.112 4.112 9 C -0.126 4.126 10 C 0.234 3.766 11 H 0.091 0.909 12 N -1.121 6.121 13 S 2.592 3.408 14 O -0.966 6.966 15 O -0.961 6.961 16 C -0.582 4.582 17 C 0.083 3.917 18 C -0.164 4.164 19 C -0.163 4.163 20 C -0.503 4.503 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.883 5.883 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.207 0.793 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.030 0.970 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.280 -8.181 -5.672 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.157 5.157 3 N -0.130 5.130 4 C -0.111 4.111 5 C -0.267 4.267 6 C -0.044 4.044 7 C -0.094 4.094 8 C -0.151 4.151 9 C -0.165 4.165 10 C 0.126 3.874 11 H 0.109 0.891 12 N -0.876 5.876 13 S 2.691 3.309 14 O -0.956 6.956 15 O -0.951 6.951 16 C -0.715 4.715 17 C 0.081 3.919 18 C -0.222 4.222 19 C -0.221 4.221 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.137 4.137 23 N -0.521 5.521 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.223 0.777 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.047 0.953 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.958 -6.033 -5.706 22.544 hybrid contribution 1.021 -1.946 0.569 2.270 sum -19.937 -7.979 -5.137 22.080 Atomic orbital electron populations 1.21767 0.74960 1.04096 1.03090 1.48277 1.06232 1.03796 1.57440 1.77612 1.01810 1.06903 1.26653 1.24466 0.95464 0.95150 0.96015 1.20259 0.93754 0.94539 1.18153 1.20855 0.91024 0.90505 1.02015 1.20348 0.99039 0.87531 1.02473 1.21536 0.93494 0.99128 1.00900 1.21931 0.98141 0.95735 1.00658 1.18958 0.85632 0.90843 0.92017 0.89101 1.55928 1.41999 1.71915 1.17732 1.05605 0.73687 0.75885 0.75761 1.93553 1.71816 1.83401 1.46855 1.93446 1.73611 1.53816 1.74220 1.30525 1.12657 1.14501 1.13861 1.17911 0.87955 0.92412 0.93637 1.22277 1.03093 1.00356 0.96458 1.22266 1.01477 0.98573 0.99779 1.20916 1.09208 0.97573 1.26544 0.92367 1.24934 0.97181 0.95115 0.96483 1.69794 1.25046 1.14133 1.43172 0.86609 0.79592 0.80516 0.80971 1.20293 1.21213 1.20276 0.90987 0.89426 0.89935 0.77708 0.89920 0.90348 0.90794 0.90432 0.90260 0.90934 0.75602 0.86502 0.86280 0.95346 0.88677 0.94524 0.94499 0.88765 0.95151 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.32 59.85 0.68 1.43 16 2 N -0.38 -4.68 4.00 -63.88 -0.26 -4.94 16 3 N -0.31 -5.00 12.59 30.55 0.38 -4.61 16 4 C 0.07 1.24 11.26 -17.48 -0.20 1.04 16 5 C -0.25 -3.54 5.60 -105.05 -0.59 -4.13 16 6 C 0.09 1.00 6.73 -82.33 -0.55 0.44 16 7 C -0.05 -0.40 5.83 -27.63 -0.16 -0.56 16 8 C -0.11 -0.78 5.90 -26.49 -0.16 -0.94 16 9 C -0.13 -1.09 5.44 -26.47 -0.14 -1.23 16 10 C 0.23 2.87 2.91 -68.81 -0.20 2.67 16 11 H 0.09 1.11 7.17 -51.93 -0.37 0.74 16 12 N -1.12 -15.06 5.25 -5.64 -0.03 -15.09 16 13 S 2.59 46.62 4.42 -107.50 -0.48 46.14 16 14 O -0.97 -20.08 15.70 -57.54 -0.90 -20.98 16 15 O -0.96 -19.09 12.21 -57.54 -0.70 -19.79 16 16 C -0.58 -11.03 4.90 37.16 0.18 -10.85 16 17 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 18 C -0.16 -4.04 7.78 37.15 0.29 -3.75 16 19 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 20 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 23 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 24 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.38 7.90 -51.93 -0.41 -0.03 16 31 H 0.21 3.70 5.33 -52.49 -0.28 3.43 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.41 4.73 8.79 -34.47 -0.30 4.42 16 39 H 0.12 1.98 7.44 -51.92 -0.39 1.59 16 40 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 41 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 42 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 43 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 46 H 0.03 0.70 5.46 -51.93 -0.28 0.41 16 47 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -33.93 368.75 -9.08 -43.01 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.14 Total: 8.17 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -1.01 Total: -29.40 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.62 Total: -48.22 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.61 Total: -40.77 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 46.62 SS G_CDS: -0.48 Total: 46.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.93 -9.08 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295235942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.475 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds