Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47628 * 2 1 4 4 C 1.50705 * 109.47122 * 119.99872 * 2 1 3 5 5 H 1.07998 * 120.00297 * 119.71937 * 4 2 1 6 6 C 1.37877 * 119.99803 * 299.99711 * 4 2 1 7 7 N 1.31518 * 119.99926 * 359.72517 * 6 4 2 8 8 Si 1.86800 * 120.00013 * 179.72407 * 6 4 2 9 9 H 1.48495 * 109.47171 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47191 * 120.00204 * 8 6 4 11 11 H 1.48509 * 109.47050 * 240.00026 * 8 6 4 12 12 C 1.52998 * 109.47088 * 239.99555 * 2 1 3 13 13 S 1.81400 * 109.47169 * 60.00046 * 12 2 1 14 14 O 1.42101 * 110.54409 * 291.62977 * 13 12 2 15 15 O 1.42103 * 110.53672 * 68.37744 * 13 12 2 16 16 N 1.65600 * 104.44952 * 179.97438 * 13 12 2 17 17 C 1.46923 * 120.63260 * 263.89817 * 16 13 12 18 18 C 1.53624 * 108.54295 * 126.37057 * 17 16 13 19 19 C 1.53032 * 109.24168 * 54.85774 * 18 17 16 20 20 C 1.53043 * 109.53804 * 298.50715 * 19 18 17 21 21 C 1.46923 * 120.62800 * 84.18161 * 16 13 12 22 22 H 1.08996 * 109.58865 * 113.79547 * 21 16 13 23 23 C 1.50700 * 109.58839 * 353.36771 * 21 16 13 24 24 C 1.39874 * 125.89643 * 111.17731 * 23 21 16 25 25 C 1.35315 * 107.92013 * 180.02562 * 24 23 21 26 26 N 1.34949 * 107.74630 * 359.97438 * 25 24 23 27 27 H 0.96998 * 126.03757 * 179.97438 * 26 25 24 28 28 N 1.30836 * 125.90330 * 290.87461 * 23 21 16 29 29 H 1.09007 * 109.46934 * 300.00636 * 1 2 3 30 30 H 1.09001 * 109.46720 * 59.99800 * 1 2 3 31 31 H 1.08995 * 109.47574 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47528 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46581 * 299.99804 * 3 2 1 34 34 H 1.08998 * 109.47557 * 59.99558 * 3 2 1 35 35 H 0.97000 * 120.00085 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47026 * 180.02562 * 12 2 1 37 37 H 1.09009 * 109.46696 * 300.00226 * 12 2 1 38 38 H 1.08995 * 109.58945 * 246.20583 * 17 16 13 39 39 H 1.09004 * 109.58814 * 6.63159 * 17 16 13 40 40 H 1.09005 * 109.63407 * 294.86605 * 18 17 16 41 41 H 1.09005 * 109.42877 * 174.72678 * 18 17 16 42 42 H 1.09001 * 109.46123 * 178.49293 * 19 18 17 43 43 H 1.08999 * 109.45113 * 58.52808 * 19 18 17 44 44 H 1.08999 * 109.50200 * 301.41717 * 20 19 18 45 45 H 1.09000 * 109.49630 * 181.31612 * 20 19 18 46 46 H 1.08000 * 126.03863 * 0.02753 * 24 23 21 47 47 H 1.07993 * 126.12800 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9477 0.8332 2.6033 8 14 2.3156 -1.1242 4.0080 9 1 3.1355 -2.2945 3.6040 10 1 3.1433 -0.1954 4.8187 11 1 1.1571 -1.5867 4.8140 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1337 -2.7304 14 8 0.0279 -0.0184 -2.8543 15 8 2.0481 1.4098 -2.8544 16 7 2.0541 -0.7403 -3.9935 17 6 3.3008 -0.3256 -4.6512 18 6 4.2719 -1.5160 -4.6525 19 6 3.5901 -2.7222 -5.3022 20 6 2.3535 -3.1109 -4.4886 21 6 1.3636 -1.9417 -4.4819 22 1 0.9975 -1.7670 -5.4936 23 6 0.2067 -2.2646 -3.5717 24 6 -1.1490 -2.1599 -3.8998 25 6 -1.8694 -2.5385 -2.8188 26 7 -1.0005 -2.8715 -1.8415 27 1 -1.2332 -3.1805 -0.9519 28 7 0.2969 -2.6966 -2.3400 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 0.7137 1.1649 3.4843 36 1 3.1300 -0.7217 -1.2489 37 1 1.6765 -1.7491 -1.2490 38 1 3.0895 -0.0217 -5.6764 39 1 3.7427 0.5076 -4.1046 40 1 4.5496 -1.7633 -3.6278 41 1 5.1655 -1.2543 -5.2191 42 1 4.2854 -3.5613 -5.3292 43 1 3.2906 -2.4661 -6.3184 44 1 2.6492 -3.3431 -3.4655 45 1 1.8817 -3.9844 -4.9387 46 1 -1.5498 -1.8344 -4.8484 47 1 -2.9467 -2.5694 -2.7506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295974338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 14.562396 kcal Electronic energy + Delta-G solvation = -31035.357113 eV Core-core repulsion = 27154.520192 eV Total energy + Delta-G solvation = -3880.836920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97363 -38.34828 -36.41373 -36.13167 -35.08734 -32.80373 -32.10215 -31.56876 -29.65033 -29.58772 -26.47223 -25.64317 -25.16678 -24.59789 -23.61893 -21.30791 -20.31847 -19.95148 -19.17788 -18.02314 -17.89080 -16.89046 -15.90299 -15.87026 -15.20742 -14.75902 -14.53795 -14.35330 -14.31393 -14.15705 -13.56398 -13.43879 -13.31636 -13.16681 -13.00896 -12.73825 -12.39867 -12.09667 -11.88560 -11.73071 -11.34189 -11.20959 -11.07580 -11.03875 -11.00975 -10.82525 -10.77867 -10.63150 -10.51223 -10.29176 -10.24906 -10.13885 -9.94668 -9.52951 -9.43748 -8.97106 -8.76735 -8.47757 -8.35682 -8.19568 -5.98346 -4.08965 1.07499 2.22219 2.91809 3.19513 3.25415 3.34060 3.37615 3.46843 4.38595 4.50736 4.58928 4.75631 4.87178 4.90726 5.00180 5.14217 5.26300 5.28950 5.33688 5.36351 5.60562 5.70502 5.79274 5.83924 5.87231 5.98333 6.00754 6.07808 6.09020 6.13462 6.27570 6.34763 6.40111 6.59680 6.81984 6.85442 6.89543 6.97433 7.02982 7.12875 7.40209 7.58596 7.66597 7.73280 7.94251 8.03494 8.17654 8.41416 8.90234 9.55480 11.02752 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.005175 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.934444 B = 5409.614089 C = 5980.766823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 C -0.164 4.164 4 C -0.492 4.492 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.587 4.587 13 S 2.589 3.411 14 O -0.948 6.948 15 O -0.976 6.976 16 N -1.004 6.004 17 C 0.120 3.880 18 C -0.138 4.138 19 C -0.115 4.115 20 C -0.128 4.128 21 C 0.247 3.753 22 H 0.089 0.911 23 C 0.054 3.946 24 C -0.222 4.222 25 C 0.061 3.939 26 N -0.458 5.458 27 H 0.439 0.561 28 N -0.282 5.282 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.093 0.907 35 H 0.260 0.740 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -8.383 -15.615 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.085 3.915 3 C -0.222 4.222 4 C -0.532 4.532 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.722 4.722 13 S 2.690 3.310 14 O -0.937 6.937 15 O -0.966 6.966 16 N -0.840 5.840 17 C -0.005 4.005 18 C -0.177 4.177 19 C -0.152 4.152 20 C -0.167 4.167 21 C 0.139 3.861 22 H 0.107 0.893 23 C -0.113 4.113 24 C -0.251 4.251 25 C -0.086 4.086 26 N -0.166 5.166 27 H 0.283 0.717 28 N -0.109 5.109 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.157 0.843 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.343 -7.770 -14.716 16.645 hybrid contribution -0.042 -0.777 1.060 1.315 sum -0.385 -8.547 -13.656 16.115 Atomic orbital electron populations 1.22155 0.97136 1.00060 1.01654 1.17827 0.92617 0.91732 0.89315 1.22285 0.99575 0.98297 1.02019 1.21010 1.31191 1.11600 0.89399 0.92398 1.24936 0.95079 0.95042 0.98801 1.69828 1.36936 1.22604 1.23103 0.86538 0.78598 0.79724 0.83132 1.19862 1.21004 1.21102 1.30767 1.10304 1.15102 1.15978 1.05811 0.75098 0.74492 0.75612 1.93596 1.28966 1.85899 1.85249 1.93494 1.78559 1.38526 1.86027 1.58161 1.35361 1.39966 1.50536 1.21471 0.83563 0.96978 0.98504 1.22038 0.98070 0.95630 1.01998 1.21464 0.96874 0.97887 0.99010 1.21969 0.95672 0.96961 1.02146 1.19016 0.87388 0.84823 0.94914 0.89288 1.21981 0.95392 1.00696 0.93231 1.20949 0.91502 1.11865 1.00808 1.22330 0.96661 1.00559 0.89043 1.46062 1.03430 1.53245 1.13876 0.71680 1.76986 1.00298 1.23343 1.10307 0.89337 0.95707 0.94819 0.94716 0.95653 0.88832 0.92999 0.87620 0.83521 0.91439 0.88856 0.91149 0.90942 0.91728 0.91850 0.90363 0.90915 0.84301 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 7.78 37.16 0.29 -3.50 16 2 C 0.09 2.19 0.52 -155.66 -0.08 2.11 16 3 C -0.16 -4.26 7.77 37.16 0.29 -3.97 16 4 C -0.49 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -24.62 9.35 55.43 0.52 -24.10 16 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.59 -12.63 4.85 37.16 0.18 -12.45 16 13 S 2.59 52.35 3.84 -107.50 -0.41 51.94 16 14 O -0.95 -20.15 11.30 -57.54 -0.65 -20.80 16 15 O -0.98 -22.19 14.14 -57.54 -0.81 -23.01 16 16 N -1.00 -15.62 3.21 -107.46 -0.35 -15.96 16 17 C 0.12 1.56 6.38 -3.49 -0.02 1.53 16 18 C -0.14 -1.45 6.10 -26.39 -0.16 -1.61 16 19 C -0.11 -1.08 5.88 -26.69 -0.16 -1.23 16 20 C -0.13 -1.45 5.32 -26.61 -0.14 -1.59 16 21 C 0.25 3.33 3.35 -68.75 -0.23 3.10 16 22 H 0.09 1.03 8.13 -51.93 -0.42 0.60 16 23 C 0.05 0.83 3.24 -82.40 -0.27 0.56 16 24 C -0.22 -3.15 9.42 -40.01 -0.38 -3.52 16 25 C 0.06 0.80 11.99 -17.22 -0.21 0.59 16 26 N -0.46 -6.64 7.07 30.44 0.22 -6.43 16 27 H 0.44 5.50 8.96 -182.61 -1.64 3.86 16 28 N -0.28 -4.69 8.81 33.67 0.30 -4.39 16 29 H 0.09 2.39 6.08 -51.92 -0.32 2.08 16 30 H 0.02 0.60 5.46 -51.93 -0.28 0.31 16 31 H 0.03 0.77 7.86 -51.93 -0.41 0.37 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.02 0.63 5.46 -51.92 -0.28 0.35 16 34 H 0.09 2.59 6.06 -51.93 -0.31 2.28 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.11 2.16 8.14 -51.92 -0.42 1.74 16 37 H 0.15 3.06 5.14 -51.92 -0.27 2.79 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.31 6.92 -51.93 -0.36 0.95 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -33.49 359.72 -10.52 -44.01 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.48 Total: 9.28 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -1.25 Total: -31.96 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.69 Total: -50.88 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.46 Total: -43.80 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.41 Total: 51.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.49 -10.52 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295974338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.570 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds