Wall clock time and date at job start Sat Apr 11 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.50703 * 109.47101 * 120.00242 * 2 1 3 5 5 H 1.08000 * 119.99932 * 119.72659 * 4 2 1 6 6 C 1.37873 * 119.99540 * 299.99768 * 4 2 1 7 7 N 1.31509 * 120.00800 * 359.72366 * 6 4 2 8 8 Si 1.86803 * 119.99421 * 179.72802 * 6 4 2 9 9 H 1.48498 * 109.47157 * 60.00146 * 8 6 4 10 10 H 1.48503 * 109.46868 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47269 * 299.99457 * 8 6 4 12 12 C 1.52996 * 109.46603 * 240.00143 * 2 1 3 13 13 S 1.81398 * 109.47601 * 60.00000 * 12 2 1 14 14 O 1.42097 * 110.54298 * 291.62192 * 13 12 2 15 15 O 1.42101 * 110.54130 * 68.36886 * 13 12 2 16 16 N 1.65597 * 104.45128 * 179.97438 * 13 12 2 17 17 C 1.46923 * 120.63391 * 95.11528 * 16 13 12 18 18 C 1.52762 * 109.01092 * 233.58406 * 17 16 13 19 19 C 1.53034 * 109.38251 * 305.58615 * 18 17 16 20 20 C 1.53041 * 109.53979 * 61.23502 * 19 18 17 21 21 C 1.46928 * 120.63106 * 275.39162 * 16 13 12 22 22 H 1.08999 * 109.59018 * 246.16183 * 21 16 13 23 23 C 1.50707 * 109.58564 * 6.58262 * 21 16 13 24 24 N 1.30495 * 125.64727 * 35.90515 * 23 21 16 25 25 C 1.34132 * 109.25257 * 179.97438 * 24 23 21 26 26 C 1.34666 * 108.02308 * 0.02562 * 25 24 23 27 27 N 1.35038 * 125.64765 * 215.59538 * 23 21 16 28 28 H 0.97003 * 126.39882 * 0.02562 * 27 23 21 29 29 H 1.08998 * 109.46777 * 299.99794 * 1 2 3 30 30 H 1.09002 * 109.47231 * 60.00026 * 1 2 3 31 31 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46824 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47166 * 300.00013 * 3 2 1 34 34 H 1.08998 * 109.47246 * 60.00493 * 3 2 1 35 35 H 0.96999 * 120.00577 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46975 * 179.97438 * 12 2 1 37 37 H 1.08999 * 109.47443 * 299.99319 * 12 2 1 38 38 H 1.09001 * 109.58096 * 353.41774 * 17 16 13 39 39 H 1.08998 * 109.59193 * 113.83977 * 17 16 13 40 40 H 1.09000 * 109.56536 * 185.54644 * 18 17 16 41 41 H 1.08998 * 109.35663 * 65.49408 * 18 17 16 42 42 H 1.08999 * 109.45970 * 301.22029 * 19 18 17 43 43 H 1.08991 * 109.45051 * 181.25201 * 19 18 17 44 44 H 1.09002 * 109.49896 * 178.68364 * 20 19 18 45 45 H 1.09003 * 109.52016 * 58.60331 * 20 19 18 46 46 H 1.07998 * 125.98593 * 179.97438 * 25 24 23 47 47 H 1.07993 * 126.59394 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6496 -1.5911 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9478 0.8330 2.6034 8 14 2.3157 -1.1245 4.0078 9 1 3.8007 -1.1309 4.0102 10 1 1.8213 -0.4240 5.2204 11 1 1.8145 -2.5223 4.0055 12 6 2.0399 -0.7212 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0478 1.4100 -2.8544 16 7 2.0539 -0.7400 -3.9936 17 6 1.2561 -1.7922 -4.6379 18 6 2.0593 -3.0917 -4.6450 19 6 3.4199 -2.8441 -5.3003 20 6 4.1944 -1.7999 -4.4929 21 6 3.4134 -0.4821 -4.4876 22 1 3.3645 -0.0822 -5.5004 23 6 4.1001 0.5086 -3.5830 24 7 3.9578 0.5816 -2.2879 25 6 4.7191 1.5795 -1.8149 26 6 5.3569 2.1467 -2.8565 27 7 4.9691 1.4639 -3.9777 28 1 5.2618 1.6359 -4.8864 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7137 1.1647 3.4844 36 1 3.1299 -0.7209 -1.2496 37 1 1.6767 -1.7489 -1.2493 38 1 0.3298 -1.9399 -4.0827 39 1 1.0276 -1.5015 -5.6632 40 1 1.5177 -3.8524 -5.2072 41 1 2.2056 -3.4316 -3.6198 42 1 3.2725 -2.4805 -6.3172 43 1 3.9852 -3.7756 -5.3261 44 1 5.1726 -1.6413 -4.9468 45 1 4.3212 -2.1518 -3.4690 46 1 4.8048 1.8766 -0.7801 47 1 6.0460 2.9772 -2.8147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296368337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:07 Heat of formation + Delta-G solvation = 26.614695 kcal Electronic energy + Delta-G solvation = -31162.535389 eV Core-core repulsion = 27282.221096 eV Total energy + Delta-G solvation = -3880.314293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88889 -38.46387 -36.28714 -35.97143 -34.91210 -32.60427 -32.31837 -31.86327 -31.33530 -28.35867 -26.28745 -25.47399 -25.02273 -24.49627 -23.57146 -21.34153 -20.68594 -20.32001 -19.13178 -18.57399 -17.65083 -16.59953 -15.78176 -15.73096 -15.15288 -14.97023 -14.62904 -14.50216 -14.36410 -14.32963 -13.74150 -13.57995 -13.39729 -13.12994 -12.90485 -12.58207 -12.53694 -12.10449 -11.75685 -11.68702 -11.38805 -11.15367 -11.06545 -10.94287 -10.89538 -10.81518 -10.70141 -10.60641 -10.48246 -10.16738 -10.05266 -9.84602 -9.47807 -9.36096 -9.24202 -8.96096 -8.76349 -8.33864 -8.20281 -7.96344 -5.84306 -3.94344 1.27799 2.29622 3.05702 3.36985 3.41701 3.44073 3.46428 3.58265 4.30082 4.50016 4.62590 4.69682 4.85623 4.91592 4.98105 5.09027 5.25010 5.29991 5.35593 5.40399 5.56810 5.60573 5.69567 5.77467 5.83662 5.89557 5.95407 6.02876 6.12964 6.22775 6.26966 6.37713 6.41212 6.80065 6.84352 7.01033 7.11689 7.18945 7.30111 7.39918 7.54684 7.69611 7.81232 7.87254 8.23599 8.32997 8.35132 8.58078 9.04085 9.69020 11.16497 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.005165 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.454051 B = 5419.709726 C = 6014.559162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 C -0.151 4.151 4 C -0.489 4.489 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.569 4.569 13 S 2.606 3.394 14 O -0.987 6.987 15 O -0.958 6.958 16 N -1.002 6.002 17 C 0.121 3.879 18 C -0.140 4.140 19 C -0.114 4.114 20 C -0.127 4.127 21 C 0.252 3.748 22 H 0.082 0.918 23 C 0.194 3.806 24 N -0.470 5.470 25 C 0.017 3.983 26 C -0.062 4.062 27 N -0.554 5.554 28 H 0.412 0.588 29 H 0.091 0.909 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.259 0.741 36 H 0.162 0.838 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.172 0.828 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -3.479 -17.637 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.087 3.913 3 C -0.209 4.209 4 C -0.529 4.529 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.704 4.704 13 S 2.708 3.292 14 O -0.977 6.977 15 O -0.947 6.947 16 N -0.838 5.838 17 C -0.004 4.004 18 C -0.179 4.179 19 C -0.151 4.151 20 C -0.167 4.167 21 C 0.144 3.856 22 H 0.100 0.900 23 C -0.070 4.070 24 N -0.192 5.192 25 C -0.131 4.131 26 C -0.195 4.195 27 N -0.157 5.157 28 H 0.249 0.751 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.179 0.821 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.189 0.811 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.881 -3.054 -17.130 19.101 hybrid contribution 1.261 -0.250 0.285 1.317 sum 9.142 -3.304 -16.844 19.448 Atomic orbital electron populations 1.22300 0.98019 1.00091 1.01804 1.17778 0.91702 0.92499 0.89326 1.22203 1.00184 0.97470 1.01019 1.20944 1.30942 1.11492 0.89515 0.92635 1.24917 0.95189 0.95068 0.98657 1.69817 1.37008 1.22658 1.23078 0.86693 0.79084 0.79755 0.82594 1.20403 1.21406 1.20488 1.30810 1.15062 1.09766 1.14733 1.05309 0.72868 0.75509 0.75503 1.93469 1.30922 1.87079 1.86254 1.93565 1.76909 1.39237 1.84999 1.58117 1.21737 1.52301 1.51606 1.21282 0.94111 0.86376 0.98628 1.21904 0.96313 0.97465 1.02193 1.21452 0.96129 0.98691 0.98850 1.21988 0.97991 0.94167 1.02551 1.18759 0.81412 0.91548 0.93929 0.90032 1.22782 0.97227 0.94619 0.92352 1.70010 1.21589 1.21641 1.05969 1.22155 0.96425 0.95138 0.99396 1.22577 1.08008 1.02763 0.86128 1.42750 1.36250 1.26771 1.09956 0.75083 0.89080 0.95788 0.94971 0.93743 0.95966 0.89912 0.93052 0.82065 0.88949 0.88630 0.91734 0.90760 0.90914 0.91901 0.91470 0.91102 0.90046 0.81057 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 7.78 37.16 0.29 -4.08 16 2 C 0.09 2.29 0.52 -155.66 -0.08 2.21 16 3 C -0.15 -3.87 7.20 37.16 0.27 -3.60 16 4 C -0.49 -13.44 8.01 -34.44 -0.28 -13.72 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -25.16 9.35 55.43 0.52 -24.64 16 8 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.57 -12.42 4.44 37.16 0.16 -12.25 16 13 S 2.61 53.79 3.80 -107.50 -0.41 53.38 16 14 O -0.99 -22.93 14.18 -57.54 -0.82 -23.75 16 15 O -0.96 -21.23 10.94 -57.54 -0.63 -21.86 16 16 N -1.00 -15.39 3.22 -107.94 -0.35 -15.74 16 17 C 0.12 1.54 6.32 -3.93 -0.02 1.51 16 18 C -0.14 -1.38 6.06 -26.84 -0.16 -1.55 16 19 C -0.11 -0.96 5.89 -26.69 -0.16 -1.12 16 20 C -0.13 -1.28 5.35 -26.61 -0.14 -1.42 16 21 C 0.25 3.19 3.41 -68.75 -0.23 2.95 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 C 0.19 2.88 5.08 -155.42 -0.79 2.09 16 24 N -0.47 -8.40 3.52 -10.82 -0.04 -8.44 16 25 C 0.02 0.28 10.25 -17.81 -0.18 0.10 16 26 C -0.06 -0.80 12.04 -16.56 -0.20 -1.00 16 27 N -0.55 -6.55 6.15 -10.23 -0.06 -6.62 16 28 H 0.41 3.19 8.96 -40.82 -0.37 2.82 16 29 H 0.09 2.58 6.08 -51.93 -0.32 2.26 16 30 H 0.02 0.61 5.46 -51.93 -0.28 0.33 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 1.06 5.25 -51.93 -0.27 0.79 16 33 H 0.02 0.55 5.46 -51.93 -0.28 0.27 16 34 H 0.08 2.30 6.06 -51.93 -0.31 1.98 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.16 3.42 5.33 -51.92 -0.28 3.14 16 37 H 0.09 1.91 8.14 -51.92 -0.42 1.48 16 38 H 0.10 1.33 6.95 -51.93 -0.36 0.97 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.17 2.83 6.85 -52.49 -0.36 2.47 16 47 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -35.18 351.45 -10.15 -45.33 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.03 Total: 8.91 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -1.62 Total: -28.25 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.07 Total: -55.43 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.45 Total: -45.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.41 Total: 53.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.18 -10.15 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296368337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.948 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds