Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.50703 * 109.47101 * 120.00242 * 2 1 3 5 5 H 1.08000 * 119.99932 * 119.72659 * 4 2 1 6 6 C 1.37873 * 119.99540 * 299.99768 * 4 2 1 7 7 N 1.31509 * 120.00800 * 359.72366 * 6 4 2 8 8 Si 1.86803 * 119.99421 * 179.72802 * 6 4 2 9 9 H 1.48498 * 109.47157 * 60.00146 * 8 6 4 10 10 H 1.48503 * 109.46868 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47269 * 299.99457 * 8 6 4 12 12 C 1.52996 * 109.46603 * 240.00143 * 2 1 3 13 13 S 1.81398 * 109.47601 * 60.00000 * 12 2 1 14 14 O 1.42097 * 110.54298 * 291.62192 * 13 12 2 15 15 O 1.42101 * 110.54130 * 68.36886 * 13 12 2 16 16 N 1.65597 * 104.45128 * 179.97438 * 13 12 2 17 17 C 1.46923 * 120.63391 * 95.11528 * 16 13 12 18 18 C 1.52762 * 109.01092 * 233.58406 * 17 16 13 19 19 C 1.53034 * 109.38251 * 305.58615 * 18 17 16 20 20 C 1.53041 * 109.53979 * 61.23502 * 19 18 17 21 21 C 1.46928 * 120.63106 * 275.39162 * 16 13 12 22 22 H 1.08999 * 109.59018 * 246.16183 * 21 16 13 23 23 C 1.50707 * 109.58564 * 6.58262 * 21 16 13 24 24 N 1.30495 * 125.64727 * 35.90515 * 23 21 16 25 25 C 1.34132 * 109.25257 * 179.97438 * 24 23 21 26 26 C 1.34666 * 108.02308 * 0.02562 * 25 24 23 27 27 N 1.35038 * 125.64765 * 215.59538 * 23 21 16 28 28 H 0.97003 * 126.39882 * 0.02562 * 27 23 21 29 29 H 1.08998 * 109.46777 * 299.99794 * 1 2 3 30 30 H 1.09002 * 109.47231 * 60.00026 * 1 2 3 31 31 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46824 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47166 * 300.00013 * 3 2 1 34 34 H 1.08998 * 109.47246 * 60.00493 * 3 2 1 35 35 H 0.96999 * 120.00577 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46975 * 179.97438 * 12 2 1 37 37 H 1.08999 * 109.47443 * 299.99319 * 12 2 1 38 38 H 1.09001 * 109.58096 * 353.41774 * 17 16 13 39 39 H 1.08998 * 109.59193 * 113.83977 * 17 16 13 40 40 H 1.09000 * 109.56536 * 185.54644 * 18 17 16 41 41 H 1.08998 * 109.35663 * 65.49408 * 18 17 16 42 42 H 1.08999 * 109.45970 * 301.22029 * 19 18 17 43 43 H 1.08991 * 109.45051 * 181.25201 * 19 18 17 44 44 H 1.09002 * 109.49896 * 178.68364 * 20 19 18 45 45 H 1.09003 * 109.52016 * 58.60331 * 20 19 18 46 46 H 1.07998 * 125.98593 * 179.97438 * 25 24 23 47 47 H 1.07993 * 126.59394 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6496 -1.5911 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9478 0.8330 2.6034 8 14 2.3157 -1.1245 4.0078 9 1 3.8007 -1.1309 4.0102 10 1 1.8213 -0.4240 5.2204 11 1 1.8145 -2.5223 4.0055 12 6 2.0399 -0.7212 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0478 1.4100 -2.8544 16 7 2.0539 -0.7400 -3.9936 17 6 1.2561 -1.7922 -4.6379 18 6 2.0593 -3.0917 -4.6450 19 6 3.4199 -2.8441 -5.3003 20 6 4.1944 -1.7999 -4.4929 21 6 3.4134 -0.4821 -4.4876 22 1 3.3645 -0.0822 -5.5004 23 6 4.1001 0.5086 -3.5830 24 7 3.9578 0.5816 -2.2879 25 6 4.7191 1.5795 -1.8149 26 6 5.3569 2.1467 -2.8565 27 7 4.9691 1.4639 -3.9777 28 1 5.2618 1.6359 -4.8864 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7137 1.1647 3.4844 36 1 3.1299 -0.7209 -1.2496 37 1 1.6767 -1.7489 -1.2493 38 1 0.3298 -1.9399 -4.0827 39 1 1.0276 -1.5015 -5.6632 40 1 1.5177 -3.8524 -5.2072 41 1 2.2056 -3.4316 -3.6198 42 1 3.2725 -2.4805 -6.3172 43 1 3.9852 -3.7756 -5.3261 44 1 5.1726 -1.6413 -4.9468 45 1 4.3212 -2.1518 -3.4690 46 1 4.8048 1.8766 -0.7801 47 1 6.0460 2.9772 -2.8147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296368337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 3.278702 kcal Electronic energy + Delta-G solvation = -31163.547314 eV Core-core repulsion = 27282.221096 eV Total energy + Delta-G solvation = -3881.326218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.95859 -39.40935 -37.98782 -37.93734 -36.62203 -33.68070 -33.55668 -33.21718 -32.77916 -29.39838 -28.10097 -27.59218 -27.17237 -25.50480 -24.46852 -22.42282 -21.74131 -21.49510 -20.85860 -19.76885 -19.13023 -17.98417 -17.67463 -17.07430 -16.78703 -16.55647 -15.93088 -15.75879 -15.57918 -15.28933 -14.88099 -14.81769 -14.59467 -14.44893 -14.38427 -14.25270 -13.96504 -13.75703 -13.35457 -13.26466 -12.81560 -12.75500 -12.73501 -12.63716 -12.44464 -12.24586 -12.12556 -12.03529 -11.91112 -11.76017 -11.58487 -11.43031 -11.40780 -11.12791 -10.53678 -10.50013 -10.38184 -10.28600 -9.85072 -9.05569 -7.95773 -6.13459 -0.30523 1.26048 1.44233 1.45339 1.52719 1.89025 2.35461 2.39057 2.47714 3.18040 3.25054 3.35981 3.60598 3.70754 4.03717 4.09703 4.17144 4.27406 4.34823 4.40044 4.50394 4.55375 4.65264 4.74938 4.77766 4.78245 4.87200 4.96787 4.98268 5.02978 5.05831 5.19952 5.22620 5.25277 5.29228 5.36083 5.44048 5.52819 5.56360 5.62549 5.70562 5.77145 6.02368 6.17411 6.26056 6.46001 6.71829 6.90360 7.25164 7.52922 9.03492 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.005165 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.454051 B = 5419.709726 C = 6014.559162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 C -0.136 4.136 4 C -0.508 4.508 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.573 4.573 13 S 2.627 3.373 14 O -1.019 7.019 15 O -0.975 6.975 16 N -0.998 5.998 17 C 0.110 3.890 18 C -0.138 4.138 19 C -0.108 4.108 20 C -0.123 4.123 21 C 0.245 3.755 22 H 0.116 0.884 23 C 0.180 3.820 24 N -0.511 5.511 25 C -0.036 4.036 26 C -0.033 4.033 27 N -0.538 5.538 28 H 0.435 0.565 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.259 0.741 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.155 0.845 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -4.513 -20.413 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.193 4.193 4 C -0.547 4.547 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.549 5.549 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.706 4.706 13 S 2.727 3.273 14 O -1.010 7.010 15 O -0.964 6.964 16 N -0.837 5.837 17 C -0.014 4.014 18 C -0.177 4.177 19 C -0.146 4.146 20 C -0.163 4.163 21 C 0.137 3.863 22 H 0.134 0.866 23 C -0.085 4.085 24 N -0.234 5.234 25 C -0.183 4.183 26 C -0.168 4.168 27 N -0.142 5.142 28 H 0.276 0.724 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.185 0.815 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.173 0.827 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 9.913 -4.095 -19.913 22.618 hybrid contribution 0.666 0.092 1.057 1.253 sum 10.580 -4.002 -18.857 21.989 Atomic orbital electron populations 1.22233 0.99198 0.99598 1.00634 1.17755 0.90815 0.92691 0.90913 1.22025 1.00579 0.97386 0.99353 1.21230 1.31136 1.11681 0.90675 0.92824 1.25652 0.95331 0.95731 1.01442 1.69965 1.37708 1.23702 1.23561 0.85725 0.78786 0.78691 0.79064 1.19668 1.21098 1.19971 1.30791 1.15506 1.09611 1.14713 1.04267 0.71963 0.75349 0.75671 1.93421 1.33142 1.87614 1.86790 1.93533 1.76950 1.40601 1.85345 1.57705 1.23416 1.52624 1.49946 1.21594 0.93528 0.87036 0.99242 1.21925 0.97429 0.96384 1.01986 1.21471 0.94764 0.99006 0.99337 1.21998 0.99259 0.93112 1.01902 1.19275 0.79679 0.92688 0.94619 0.86607 1.23163 0.97854 0.95530 0.91928 1.69763 1.22907 1.22783 1.07951 1.22199 0.99043 0.97042 1.00036 1.23037 1.06407 1.02124 0.85186 1.42683 1.35127 1.25510 1.10914 0.72434 0.91243 0.95815 0.95037 0.92900 0.96284 0.92584 0.93142 0.81481 0.88776 0.90783 0.88970 0.88179 0.92691 0.89564 0.89719 0.88291 0.92464 0.82717 0.77116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.82 7.78 71.98 0.56 -8.26 16 2 C 0.08 4.28 0.52 -52.93 -0.03 4.25 16 3 C -0.14 -7.27 7.20 71.98 0.52 -6.76 16 4 C -0.51 -28.73 8.01 25.60 0.21 -28.52 16 5 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 6 C 0.02 0.96 5.15 84.65 0.44 1.39 16 7 N -0.91 -53.36 9.35 21.44 0.20 -53.16 16 8 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 C -0.57 -25.82 4.44 71.98 0.32 -25.50 16 13 S 2.63 109.73 3.80 -56.49 -0.21 109.52 16 14 O -1.02 -48.45 14.18 -127.65 -1.81 -50.26 16 15 O -0.98 -43.54 10.94 -127.65 -1.40 -44.93 16 16 N -1.00 -29.28 3.22 -495.42 -1.60 -30.88 16 17 C 0.11 2.58 6.32 86.22 0.54 3.13 16 18 C -0.14 -2.37 6.06 30.53 0.19 -2.19 16 19 C -0.11 -1.37 5.89 30.62 0.18 -1.19 16 20 C -0.12 -2.07 5.35 30.67 0.16 -1.91 16 21 C 0.24 5.49 3.41 44.23 0.15 5.64 16 22 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 23 C 0.18 5.02 5.08 138.13 0.70 5.72 16 24 N -0.51 -18.28 3.52 -188.13 -0.66 -18.94 16 25 C -0.04 -1.21 10.25 83.52 0.86 -0.36 16 26 C -0.03 -0.79 12.04 83.08 1.00 0.21 16 27 N -0.54 -11.14 6.15 -186.27 -1.15 -12.29 16 28 H 0.43 4.93 8.96 -92.71 -0.83 4.10 16 29 H 0.07 4.12 6.08 -2.39 -0.01 4.10 16 30 H 0.02 1.27 5.46 -2.39 -0.01 1.26 16 31 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.05 2.67 5.25 -2.39 -0.01 2.66 16 33 H 0.02 0.99 5.46 -2.39 -0.01 0.97 16 34 H 0.06 3.26 6.06 -2.39 -0.01 3.24 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.17 7.35 5.33 -2.39 -0.01 7.34 16 37 H 0.09 4.05 8.14 -2.39 -0.02 4.03 16 38 H 0.07 2.05 6.95 -2.39 -0.02 2.04 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.16 5.43 6.85 -2.91 -0.02 5.41 16 47 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -79.68 351.45 1.36 -78.32 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.16 Total: 30.39 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 5.79 Total: -54.34 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -3.20 Total: -115.26 kcal Atomic # 8 Polarization: -91.99 SS G_CDS: -3.21 Total: -95.20 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 109.73 SS G_CDS: -0.21 Total: 109.52 kcal Total: -79.68 1.36 -78.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296368337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.602 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds