Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00214 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 13 13 S 1.81396 * 109.47360 * 59.99690 * 12 2 1 14 14 O 1.42105 * 110.54588 * 291.62405 * 13 12 2 15 15 O 1.42102 * 110.54376 * 68.37298 * 13 12 2 16 16 N 1.65597 * 104.45473 * 180.02562 * 13 12 2 17 17 C 1.46931 * 120.63042 * 89.99500 * 16 13 12 18 18 C 1.53191 * 108.77304 * 126.37621 * 17 16 13 19 19 C 1.53046 * 109.31444 * 54.63232 * 18 17 16 20 20 C 1.53038 * 109.53970 * 298.63683 * 19 18 17 21 21 H 1.08995 * 109.49698 * 301.41173 * 20 19 18 22 22 C 1.50698 * 109.49770 * 181.31362 * 20 19 18 23 23 N 1.30494 * 125.65135 * 144.69151 * 22 20 19 24 24 C 1.34131 * 109.25880 * 179.89812 * 23 22 20 25 25 C 1.34669 * 108.01641 * 0.36808 * 24 23 22 26 26 N 1.35041 * 125.64806 * 325.00409 * 22 20 19 27 27 H 0.96997 * 126.40376 * 359.97438 * 26 22 20 28 28 C 1.46928 * 120.63148 * 269.72433 * 16 13 12 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47153 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47289 * 299.99953 * 12 2 1 38 38 H 1.08996 * 109.58722 * 246.16305 * 17 16 13 39 39 H 1.08997 * 109.58769 * 6.44624 * 17 16 13 40 40 H 1.08998 * 109.49906 * 174.58574 * 18 17 16 41 41 H 1.09001 * 109.49760 * 294.68461 * 18 17 16 42 42 H 1.09004 * 109.45364 * 58.66087 * 19 18 17 43 43 H 1.09000 * 109.45601 * 178.62510 * 19 18 17 44 44 H 1.07994 * 125.99003 * 180.18905 * 24 23 22 45 45 H 1.08000 * 126.58944 * 179.82055 * 25 24 23 46 46 H 1.09004 * 109.58272 * 353.41336 * 28 16 13 47 47 H 1.09000 * 109.58630 * 113.83635 * 28 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.1456 -2.2878 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1662 -1.5868 4.8159 12 6 2.0401 -0.7211 -1.2493 13 16 1.4354 0.1340 -2.7303 14 8 0.0280 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0530 -0.7405 -3.9937 17 6 1.2997 -1.8656 -4.5644 18 6 1.1665 -1.6536 -6.0757 19 6 2.5571 -1.4553 -6.6835 20 6 3.2082 -0.2104 -6.0767 21 1 2.5791 0.6590 -6.2678 22 6 4.5640 0.0023 -6.6992 23 7 5.1083 1.1593 -6.9596 24 6 6.3169 0.9662 -7.5083 25 6 6.5261 -0.3611 -7.5985 26 7 5.4144 -0.9730 -7.0854 27 1 5.2653 -1.9287 -7.0130 28 6 3.3620 -0.4025 -4.5690 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 0.7095 1.1617 3.4845 36 1 3.1301 -0.7207 -1.2495 37 1 1.6767 -1.7488 -1.2494 38 1 1.8319 -2.7970 -4.3716 39 1 0.3095 -1.9099 -4.1109 40 1 0.6941 -2.5269 -6.5254 41 1 0.5567 -0.7706 -6.2669 42 1 3.1741 -2.3283 -6.4707 43 1 2.4670 -1.3286 -7.7624 44 1 7.0009 1.7395 -7.8251 45 1 7.4029 -0.8489 -7.9982 46 1 3.7311 0.5197 -4.1203 47 1 4.0658 -1.2123 -4.3766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296484384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = -18.455176 kcal Electronic energy + Delta-G solvation = -29067.864115 eV Core-core repulsion = 25185.595446 eV Total energy + Delta-G solvation = -3882.268670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29777 -38.62880 -36.62758 -36.27097 -35.29173 -33.22322 -32.58477 -31.86031 -31.66530 -28.59083 -26.67718 -25.71424 -25.23908 -24.67487 -23.92250 -21.99416 -20.89430 -20.34142 -19.46065 -18.46506 -18.05760 -17.37934 -16.04199 -15.98786 -15.45337 -15.19089 -14.87777 -14.72439 -14.60067 -14.44445 -14.17001 -13.81917 -13.75572 -13.56435 -13.01158 -13.00438 -12.69879 -12.51088 -12.06779 -11.92023 -11.60917 -11.51419 -11.29437 -11.11145 -11.09575 -10.92544 -10.89856 -10.71134 -10.67444 -10.35671 -10.26970 -10.21839 -10.17175 -10.10435 -9.65415 -9.59256 -9.04746 -8.69179 -8.51257 -8.41004 -6.03939 -4.16071 0.79366 1.83435 2.86209 2.95714 3.08590 3.24286 3.32744 3.35092 4.03628 4.32182 4.39256 4.45874 4.53526 4.68205 4.75243 4.87754 4.99395 5.05086 5.13620 5.21209 5.21952 5.28482 5.39902 5.47510 5.56277 5.68522 5.69130 5.71737 5.78358 5.83355 5.90858 6.07800 6.11455 6.37396 6.53678 6.63083 6.70275 6.79753 6.90986 7.04735 7.12781 7.31556 7.50414 7.67468 7.93287 7.98182 8.09509 8.32636 8.82617 9.49461 10.97360 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.003102 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.523563 B = 9023.274680 C = 9634.960913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.581 4.581 13 S 2.590 3.410 14 O -0.960 6.960 15 O -0.957 6.957 16 N -1.008 6.008 17 C 0.114 3.886 18 C -0.129 4.129 19 C -0.114 4.114 20 C -0.016 4.016 21 H 0.109 0.891 22 C 0.221 3.779 23 N -0.483 5.483 24 C -0.027 4.027 25 C -0.060 4.060 26 N -0.565 5.565 27 H 0.417 0.583 28 C 0.129 3.871 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.104 0.896 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -8.040 -19.974 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.715 4.715 13 S 2.690 3.310 14 O -0.950 6.950 15 O -0.947 6.947 16 N -0.843 5.843 17 C -0.012 4.012 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.038 4.038 21 H 0.127 0.873 22 C -0.044 4.044 23 N -0.202 5.202 24 C -0.175 4.175 25 C -0.194 4.194 26 N -0.168 5.168 27 H 0.255 0.745 28 C 0.002 3.998 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.187 0.813 45 H 0.193 0.807 46 H 0.122 0.878 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.850 -6.334 -19.812 21.606 hybrid contribution 1.305 -2.293 0.913 2.792 sum 7.155 -8.627 -18.899 21.972 Atomic orbital electron populations 1.22275 0.96895 1.00583 1.02360 1.17941 0.92839 0.92244 0.89064 1.22274 0.99726 0.97776 1.02372 1.20977 1.31666 1.12071 0.89406 0.92302 1.24939 0.94896 0.94986 0.98933 1.69811 1.36344 1.22568 1.23381 0.86485 0.78636 0.79617 0.82934 1.19872 1.20918 1.20944 1.30571 1.11212 1.12757 1.16915 1.05831 0.74700 0.75101 0.75361 1.93528 1.29323 1.86501 1.85681 1.93552 1.78011 1.37581 1.85548 1.58059 1.29013 1.47186 1.50057 1.21454 0.97208 0.88555 0.93968 1.21843 0.96446 1.03096 0.95454 1.21576 0.97038 0.96424 1.00165 1.19911 0.88560 1.00825 0.94538 0.87262 1.23058 0.95095 0.83414 1.02809 1.70308 1.08600 1.24498 1.16826 1.22396 0.95553 0.94613 1.04954 1.22752 0.93383 0.94816 1.08445 1.43273 1.15337 1.10175 1.48057 0.74468 1.21255 0.84323 1.02197 0.92037 0.95349 0.94506 0.88636 0.88636 0.94485 0.95317 0.92778 0.86512 0.86481 0.91587 0.88328 0.90340 0.90740 0.91986 0.91203 0.81303 0.80681 0.87813 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 7.78 37.16 0.29 -3.73 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 4 C -0.50 -13.18 8.01 -34.45 -0.28 -13.46 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.58 -11.30 5.12 37.16 0.19 -11.11 16 13 S 2.59 47.87 4.49 -107.50 -0.48 47.39 16 14 O -0.96 -19.63 14.21 -57.54 -0.82 -20.45 16 15 O -0.96 -20.24 14.20 -57.54 -0.82 -21.06 16 16 N -1.01 -13.72 3.23 -113.76 -0.37 -14.09 16 17 C 0.11 1.22 6.43 -3.71 -0.02 1.20 16 18 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 19 C -0.11 -0.90 4.89 -26.69 -0.13 -1.03 16 20 C -0.02 -0.18 2.80 -91.88 -0.26 -0.44 16 21 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 22 C 0.22 2.50 6.87 -155.42 -1.07 1.43 16 23 N -0.48 -6.65 11.25 -10.82 -0.12 -6.77 16 24 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 25 C -0.06 -0.48 12.04 -16.56 -0.20 -0.68 16 26 N -0.57 -4.55 5.91 -10.23 -0.06 -4.61 16 27 H 0.42 2.07 8.20 -40.82 -0.33 1.73 16 28 C 0.13 1.59 5.67 -3.93 -0.02 1.57 16 29 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 32 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 37 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 1.15 6.86 -51.93 -0.36 0.79 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.37 7.49 -51.93 -0.39 -0.02 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.10 1.50 6.85 -51.93 -0.36 1.15 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -34.03 370.54 -10.59 -44.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.25 Total: 5.72 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -1.75 Total: -28.30 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.03 Total: -49.10 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.63 Total: -41.51 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.48 Total: 47.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.03 -10.59 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296484384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.166 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds