Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34938 * 126.04052 * 2 1 4 4 C 1.35313 * 107.74811 * 179.84196 * 3 2 1 5 5 C 1.50700 * 126.04183 * 180.16092 * 4 3 2 6 6 H 1.08995 * 110.64350 * 2.02064 * 5 4 3 7 7 C 1.55154 * 110.71889 * 238.87440 * 5 4 3 8 8 C 1.54914 * 101.58321 * 206.13502 * 7 5 4 9 9 N 1.47423 * 104.82924 * 37.01021 * 8 7 5 10 10 S 1.65602 * 125.64688 * 155.90761 * 9 8 7 11 11 O 1.42098 * 104.27877 * 206.05111 * 10 9 8 12 12 O 1.42100 * 104.27851 * 333.90370 * 10 9 8 13 13 C 1.81400 * 104.45088 * 89.97512 * 10 9 8 14 14 C 1.52998 * 109.46864 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.47457 * 300.00197 * 14 13 10 16 16 C 1.53000 * 109.47314 * 60.00485 * 14 13 10 17 17 C 1.50710 * 109.46995 * 180.02562 * 14 13 10 18 18 H 1.08001 * 119.99356 * 0.83411 * 17 14 13 19 19 C 1.37874 * 119.99894 * 180.84052 * 17 14 13 20 20 N 1.31519 * 119.99352 * 194.57640 * 19 17 14 21 21 Si 1.86798 * 120.00337 * 14.57545 * 19 17 14 22 22 H 1.48505 * 109.46743 * 84.45404 * 21 19 17 23 23 H 1.48495 * 109.46961 * 204.45481 * 21 19 17 24 24 H 1.48497 * 109.47054 * 324.45742 * 21 19 17 25 25 C 1.47021 * 108.70768 * 335.87526 * 9 8 7 26 26 C 1.39872 * 107.91694 * 0.42446 * 4 3 2 27 27 N 1.30834 * 108.20361 * 359.73541 * 26 4 3 28 28 H 1.09002 * 109.47059 * 269.71942 * 1 2 3 29 29 H 1.08997 * 109.47579 * 149.71482 * 1 2 3 30 30 H 1.09010 * 109.46868 * 29.71416 * 1 2 3 31 31 H 1.08006 * 126.12711 * 359.97438 * 3 2 1 32 32 H 1.08993 * 111.00807 * 324.21220 * 7 5 4 33 33 H 1.09003 * 111.00565 * 88.02907 * 7 5 4 34 34 H 1.08999 * 110.36529 * 155.85103 * 8 7 5 35 35 H 1.08999 * 110.36491 * 278.17787 * 8 7 5 36 36 H 1.08992 * 109.47270 * 299.99989 * 13 10 9 37 37 H 1.09004 * 109.46524 * 60.00327 * 13 10 9 38 38 H 1.08997 * 109.46908 * 70.23518 * 15 14 13 39 39 H 1.09007 * 109.46686 * 190.23438 * 15 14 13 40 40 H 1.08996 * 109.46774 * 310.23407 * 15 14 13 41 41 H 1.09004 * 109.47059 * 59.99133 * 16 14 13 42 42 H 1.09001 * 109.47554 * 179.97438 * 16 14 13 43 43 H 1.09004 * 109.47181 * 300.00078 * 16 14 13 44 44 H 0.97002 * 119.99721 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.88267 * 241.64195 * 25 9 8 46 46 H 1.08995 * 109.88801 * 120.47464 * 25 9 8 47 47 H 1.08001 * 125.89607 * 179.72460 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 0.0036 5 6 4.7680 1.5451 0.0083 6 1 4.4858 2.5972 0.0445 7 6 5.6552 1.2570 -1.2315 8 6 7.0544 1.6789 -0.7176 9 7 7.0783 1.2628 0.6964 10 16 8.4381 0.9391 1.5844 11 8 7.9950 0.0346 2.5868 12 8 9.4026 0.5461 0.6177 13 6 8.8884 2.5346 2.3207 14 6 10.1455 2.3649 3.1760 15 6 9.8731 1.3491 4.2873 16 6 11.2955 1.8653 2.2991 17 6 10.5193 3.6903 3.7883 18 1 9.9124 4.5632 3.5982 19 6 11.6361 3.7884 4.5909 20 7 11.8089 4.8483 5.3502 21 14 12.9035 2.4162 4.5998 22 1 13.8544 2.6135 3.4763 23 1 13.6456 2.4363 5.8859 24 1 12.2179 1.1082 4.4441 25 6 5.6950 1.1836 1.1881 26 6 3.5346 -0.7323 -0.0041 27 7 2.2891 -1.1329 -0.0062 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 -0.8874 -0.5182 30 1 -0.3633 0.8926 -0.5094 31 1 1.9282 2.1193 -0.0004 32 1 5.6363 0.1978 -1.4880 33 1 5.3499 1.8680 -2.0810 34 1 7.8352 1.1645 -1.2778 35 1 7.1779 2.7590 -0.7973 36 1 9.0821 3.2584 1.5291 37 1 8.0693 2.8903 2.9458 38 1 9.7817 0.3529 3.8544 39 1 10.6973 1.3612 5.0006 40 1 8.9463 1.6096 4.7984 41 1 11.4895 2.5889 1.5074 42 1 12.1912 1.7447 2.9083 43 1 11.0249 0.9066 1.8566 44 1 12.5948 4.9176 5.9146 45 1 5.5502 1.8920 2.0037 46 1 5.4808 0.1714 1.5311 47 1 4.4053 -1.3712 -0.0078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296656139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 4.341587 kcal Electronic energy + Delta-G solvation = -28527.718615 eV Core-core repulsion = 24646.438487 eV Total energy + Delta-G solvation = -3881.280128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15945 -39.28557 -38.48867 -38.15329 -36.93013 -34.35143 -34.04193 -32.70019 -30.62066 -29.44918 -28.95989 -28.16296 -27.11966 -26.99616 -23.64640 -22.82733 -21.86187 -21.51029 -20.55044 -19.80384 -18.89295 -18.14534 -17.65036 -17.37661 -17.17136 -16.84030 -16.28729 -16.19022 -15.29206 -15.19937 -15.04320 -14.85573 -14.69276 -14.56981 -14.36476 -14.17095 -14.03892 -13.72370 -13.60524 -13.46483 -13.28970 -13.23217 -13.07501 -12.78364 -12.70102 -12.60137 -12.48289 -12.27813 -12.12706 -12.01720 -11.86588 -11.81160 -11.74880 -11.26185 -10.96394 -10.68959 -10.50624 -10.32653 -9.84373 -9.21418 -8.35263 -6.34395 -0.70093 1.01704 1.29660 1.34994 1.42502 1.73188 1.79313 1.85095 2.29209 2.85271 2.99000 3.14724 3.62491 3.65945 3.79033 3.92601 4.07537 4.12193 4.22556 4.23889 4.39390 4.45912 4.48439 4.49498 4.55711 4.59743 4.63052 4.68310 4.72224 4.74481 4.75832 4.87626 4.92721 4.96911 5.07847 5.13527 5.13649 5.19787 5.27405 5.37147 5.45906 5.51665 5.60634 5.62412 5.72505 6.22265 6.26280 6.68195 6.78099 7.29802 8.80509 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.002674 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.319081 B =10469.032222 C =10684.120808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.071 3.929 4 C -0.240 4.240 5 C -0.004 4.004 6 H 0.118 0.882 7 C -0.111 4.111 8 C 0.101 3.899 9 N -1.016 6.016 10 S 2.626 3.374 11 O -0.984 6.984 12 O -0.981 6.981 13 C -0.582 4.582 14 C 0.044 3.956 15 C -0.175 4.175 16 C -0.186 4.186 17 C -0.502 4.502 18 H 0.051 0.949 19 C 0.026 3.974 20 N -0.935 5.935 21 Si 0.916 3.084 22 H -0.274 1.274 23 H -0.305 1.305 24 H -0.224 1.224 25 C 0.116 3.884 26 C 0.042 3.958 27 N -0.341 5.341 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.214 0.786 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.266 0.734 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.947 -5.311 -15.477 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.076 4.076 4 C -0.252 4.252 5 C -0.025 4.025 6 H 0.136 0.864 7 C -0.150 4.150 8 C -0.023 4.023 9 N -0.855 5.855 10 S 2.725 3.275 11 O -0.975 6.975 12 O -0.972 6.972 13 C -0.713 4.713 14 C 0.041 3.959 15 C -0.232 4.232 16 C -0.243 4.243 17 C -0.541 4.541 18 H 0.069 0.931 19 C -0.173 4.173 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.201 1.201 23 H -0.234 1.234 24 H -0.148 1.148 25 C -0.009 4.009 26 C -0.143 4.143 27 N -0.163 5.163 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.230 0.770 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.353 -7.133 -15.242 28.785 hybrid contribution 1.570 0.912 0.725 1.955 sum -21.783 -6.221 -14.517 26.906 Atomic orbital electron populations 1.22173 0.72158 1.05920 1.04408 1.48821 1.07922 1.03522 1.56245 1.22936 0.90056 0.94686 0.99872 1.19946 0.94649 0.93026 1.17576 1.20414 0.89657 0.99374 0.93056 0.86421 1.22840 0.91851 1.02518 0.97822 1.22382 0.99790 1.01034 0.79108 1.58476 1.19290 1.85425 1.22304 1.04375 0.72367 0.77403 0.73361 1.93513 1.80978 1.61725 1.61275 1.93497 1.60931 1.81927 1.60818 1.30432 1.07530 1.21733 1.11634 1.18225 0.90140 0.95611 0.91894 1.22694 1.02567 0.97530 1.00444 1.22842 0.99637 1.01442 1.00376 1.20913 1.10544 0.94011 1.28584 0.93096 1.25663 0.99963 0.97630 0.94013 1.70053 1.29253 1.31873 1.26181 0.86723 0.79825 0.82980 0.75928 1.20107 1.23379 1.14825 1.22004 0.79340 1.01620 0.97926 1.23918 0.94975 0.95864 0.99563 1.77317 1.02462 1.10214 1.26298 0.89963 0.89600 0.86315 0.76976 0.91364 0.87238 0.90649 0.89236 0.84110 0.84531 0.93272 0.92463 0.91773 0.90952 0.93796 0.91932 0.92470 0.90716 0.92453 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.47 127.77 1.47 2.06 16 2 N -0.38 -5.85 4.01 -369.55 -1.48 -7.33 16 3 C 0.07 0.86 11.40 83.54 0.95 1.81 16 4 C -0.24 -3.86 4.94 -20.14 -0.10 -3.96 16 5 C 0.00 -0.06 3.36 -10.35 -0.03 -0.09 16 6 H 0.12 1.08 8.13 -2.39 -0.02 1.06 16 7 C -0.11 -1.55 6.51 31.99 0.21 -1.34 16 8 C 0.10 1.90 7.07 86.86 0.61 2.52 16 9 N -1.02 -25.36 3.62 -506.41 -1.83 -27.20 16 10 S 2.63 89.30 4.69 -56.49 -0.26 89.03 16 11 O -0.98 -38.53 15.45 -127.65 -1.97 -40.50 16 12 O -0.98 -37.21 14.90 -127.65 -1.90 -39.11 16 13 C -0.58 -20.82 5.10 71.98 0.37 -20.45 16 14 C 0.04 1.98 0.52 -52.93 -0.03 1.95 16 15 C -0.17 -7.82 6.95 71.98 0.50 -7.32 16 16 C -0.19 -8.16 7.22 71.98 0.52 -7.64 16 17 C -0.50 -27.22 8.62 25.60 0.22 -27.00 16 18 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 19 C 0.03 1.48 5.31 84.65 0.45 1.93 16 20 N -0.93 -56.94 13.96 21.45 0.30 -56.65 16 21 Si 0.92 44.38 22.79 68.60 1.56 45.94 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.31 -14.86 7.11 99.48 0.71 -14.16 16 24 H -0.22 -9.98 4.67 99.48 0.46 -9.51 16 25 C 0.12 2.47 6.45 86.73 0.56 3.03 16 26 C 0.04 0.88 10.74 85.24 0.92 1.79 16 27 N -0.34 -7.69 12.58 -57.02 -0.72 -8.40 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.21 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.07 1.09 7.64 -2.39 -0.02 1.07 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 37 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 38 H 0.05 2.06 6.21 -2.39 -0.01 2.04 16 39 H 0.06 2.63 4.32 -2.38 -0.01 2.62 16 40 H 0.06 2.72 8.11 -2.39 -0.02 2.70 16 41 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 42 H 0.04 1.98 2.28 -2.39 -0.01 1.97 16 43 H 0.06 2.56 5.47 -2.39 -0.01 2.55 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.06 1.40 7.26 -2.39 -0.02 1.38 16 47 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -78.69 369.31 1.03 -77.67 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.73 Total: 19.25 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 6.61 Total: -52.70 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.73 Total: -99.57 kcal Atomic # 8 Polarization: -75.74 SS G_CDS: -3.87 Total: -79.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.56 Total: 45.94 kcal Atomic # 16 Polarization: 89.30 SS G_CDS: -0.26 Total: 89.03 kcal Total: -78.69 1.03 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296656139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.007 kcal (2) G-P(sol) polarization free energy of solvation -78.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds