Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47308 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99605 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00254 * 179.97438 * 4 3 2 7 7 C 1.47607 * 122.42822 * 359.71037 * 6 4 3 8 8 S 1.84333 * 102.51579 * 155.11395 * 7 6 4 9 9 C 1.84205 * 93.83001 * 33.71108 * 8 7 6 10 10 C 1.45502 * 122.43120 * 179.97438 * 6 4 3 11 11 H 1.08998 * 108.75628 * 301.89107 * 10 6 4 12 12 C 1.50703 * 108.75005 * 60.11079 * 10 6 4 13 13 O 1.21286 * 120.00178 * 15.71905 * 12 10 6 14 14 N 1.34780 * 119.99778 * 195.71817 * 12 10 6 15 15 C 1.46961 * 120.59190 * 3.21641 * 14 12 10 16 16 C 1.53814 * 108.39621 * 124.76078 * 15 14 12 17 17 N 1.46965 * 108.58034 * 49.63739 * 16 15 14 18 18 C 1.36933 * 120.59488 * 124.66884 * 17 16 15 19 19 H 1.07995 * 119.99924 * 331.13268 * 18 17 16 20 20 C 1.38816 * 119.99926 * 151.13490 * 18 17 16 21 21 N 1.31622 * 119.99935 * 167.86428 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 347.86150 * 20 18 17 23 23 H 1.48511 * 109.46655 * 95.24404 * 22 20 18 24 24 H 1.48495 * 109.47169 * 215.24353 * 22 20 18 25 25 H 1.48496 * 109.46977 * 335.24598 * 22 20 18 26 26 C 1.46965 * 118.80920 * 304.64772 * 17 16 15 27 27 C 1.46960 * 120.59245 * 183.50086 * 14 12 10 28 28 H 1.09004 * 109.46995 * 300.00082 * 1 2 3 29 29 H 1.09001 * 109.47144 * 60.00311 * 1 2 3 30 30 H 1.09004 * 109.47742 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47115 * 239.99655 * 2 1 3 32 32 H 1.09003 * 109.46747 * 120.00050 * 2 1 3 33 33 H 1.08996 * 109.47351 * 59.99800 * 3 2 1 34 34 H 1.09003 * 109.47294 * 299.99714 * 3 2 1 35 35 H 1.09000 * 110.77562 * 273.47605 * 7 6 4 36 36 H 1.08996 * 110.77834 * 36.89939 * 7 6 4 37 37 H 1.08999 * 111.05648 * 209.57185 * 9 8 7 38 38 H 1.08998 * 111.08727 * 85.60738 * 9 8 7 39 39 H 1.08998 * 109.60983 * 244.54319 * 15 14 12 40 40 H 1.08996 * 109.61378 * 5.05486 * 15 14 12 41 41 H 1.09005 * 109.74449 * 289.84866 * 16 15 14 42 42 H 1.09002 * 109.67891 * 169.38641 * 16 15 14 43 43 H 0.96993 * 119.99913 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.61452 * 295.47712 * 26 17 16 45 45 H 1.09011 * 109.60970 * 174.97066 * 26 17 16 46 46 H 1.09005 * 109.61190 * 354.94578 * 27 14 12 47 47 H 1.09005 * 109.61088 * 115.45999 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1533 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 3.5378 3.9181 -0.0077 8 16 4.7969 5.0299 0.7514 9 6 6.2218 4.1166 0.0243 10 6 5.6746 2.6713 -0.0013 11 1 6.0479 2.1419 0.8752 12 6 6.1887 1.9807 -1.2382 13 8 5.4354 1.7467 -2.1596 14 7 7.4856 1.6232 -1.3206 15 6 8.3938 1.8366 -0.1851 16 6 9.0469 0.4910 0.1738 17 7 9.5795 -0.1136 -1.0553 18 6 10.8971 -0.4768 -1.1390 19 1 11.6410 0.0535 -0.5631 20 6 11.2766 -1.5266 -1.9641 21 7 12.5497 -1.7254 -2.2328 22 14 9.9805 -2.6572 -2.6931 23 1 9.6247 -2.1880 -4.0565 24 1 10.5164 -4.0400 -2.7696 25 1 8.7702 -2.6422 -1.8328 26 6 8.6724 -0.3219 -2.1927 27 6 8.0181 1.0186 -2.5497 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.3081 4.2293 -1.0267 36 1 2.6340 3.8854 0.6007 37 1 7.1017 4.1906 0.6634 38 1 6.4414 4.4703 -0.9831 39 1 9.1632 2.5572 -0.4625 40 1 7.8298 2.2107 0.6692 41 1 8.3036 -0.1727 0.6157 42 1 9.8587 0.6545 0.8826 43 1 12.8148 -2.4587 -2.8096 44 1 7.9026 -1.0435 -1.9195 45 1 9.2375 -0.6925 -3.0481 46 1 7.2059 0.8523 -3.2573 47 1 8.7614 1.6823 -2.9915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330922687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -16.377288 kcal Electronic energy + Delta-G solvation = -29224.418249 eV Core-core repulsion = 25342.239684 eV Total energy + Delta-G solvation = -3882.178566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.89791 -39.31824 -37.24469 -36.26341 -34.63950 -34.18850 -32.14761 -31.40816 -30.60527 -28.22095 -27.75799 -27.19966 -24.54344 -23.76453 -23.17216 -22.02017 -20.92320 -19.89030 -18.76040 -17.91078 -17.55914 -17.08218 -16.60215 -16.03373 -15.73947 -15.62730 -15.20059 -14.89068 -14.63699 -14.31193 -14.22315 -13.98639 -13.79339 -13.71152 -13.52832 -13.23197 -12.78411 -12.70655 -12.56909 -12.39532 -12.22150 -12.06817 -12.01335 -11.96211 -11.41980 -11.25989 -11.15204 -10.99522 -10.98649 -10.46903 -10.15009 -10.07068 -9.99934 -9.73425 -9.47767 -9.00741 -8.90265 -8.38744 -8.31950 -7.00045 -5.98866 -3.42378 1.15449 1.49601 2.23312 2.52275 2.66918 3.20151 3.29103 3.47366 3.48378 3.87231 4.26293 4.32240 4.46640 4.48839 4.58956 4.59470 4.74604 4.80042 4.83110 4.96867 5.07983 5.17933 5.21324 5.25530 5.30330 5.40748 5.45290 5.47915 5.65496 5.71850 5.78170 5.83818 5.90408 5.93863 6.05861 6.09993 6.13952 6.32878 6.48553 6.67023 6.79480 6.88920 7.60686 7.86987 7.92395 8.26019 8.28781 8.83228 9.63506 9.99395 11.16647 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003616 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.010068 B = 7741.506037 C = 9230.162740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.531 3.469 5 O -0.511 6.511 6 N -0.603 5.603 7 C 0.156 3.844 8 S -0.259 6.259 9 C -0.061 4.061 10 C 0.116 3.884 11 H 0.112 0.888 12 C 0.511 3.489 13 O -0.536 6.536 14 N -0.593 5.593 15 C 0.084 3.916 16 C 0.136 3.864 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.089 0.911 20 C 0.024 3.976 21 N -0.913 5.913 22 Si 0.887 3.113 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.264 1.264 26 C 0.113 3.887 27 C 0.097 3.903 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.078 0.922 43 H 0.264 0.736 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.491 13.780 6.719 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.173 4.173 4 C 0.319 3.681 5 O -0.385 6.385 6 N -0.340 5.340 7 C -0.078 4.078 8 S -0.032 6.032 9 C -0.210 4.210 10 C 0.007 3.993 11 H 0.129 0.871 12 C 0.295 3.705 13 O -0.413 6.413 14 N -0.326 5.326 15 C -0.041 4.041 16 C 0.009 3.991 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.107 0.893 20 C -0.175 4.175 21 N -0.556 5.556 22 Si 0.719 3.281 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.189 1.189 26 C -0.013 4.013 27 C -0.026 4.026 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.510 13.926 6.902 26.538 hybrid contribution -0.353 -1.489 -1.251 1.977 sum -21.864 12.437 5.651 25.780 Atomic orbital electron populations 1.21782 0.95333 1.02080 1.01673 1.21301 0.95312 0.94391 1.03917 1.21718 0.90718 1.00662 1.04218 1.20623 0.90363 0.81994 0.75150 1.90780 1.70151 1.30215 1.47313 1.48228 1.04093 1.05982 1.75729 1.24293 0.97037 0.82763 1.03699 1.88392 1.03581 1.43146 1.68106 1.24506 0.98990 0.91736 1.05800 1.21183 0.82155 0.96483 0.99505 0.87081 1.20443 0.82213 0.79446 0.88408 1.90652 1.55484 1.55491 1.39702 1.47934 1.08237 1.60182 1.16230 1.22607 0.93025 1.00772 0.87655 1.21355 0.97060 0.91100 0.89595 1.44251 1.07446 1.72741 1.08569 1.18939 0.81461 1.11882 1.26892 0.89331 1.25304 0.95738 0.97210 0.99292 1.69746 1.14740 1.32281 1.38811 0.86950 0.82187 0.80177 0.78781 1.21673 1.23190 1.18930 1.21845 0.93326 0.94088 0.92070 1.22255 0.98174 0.96518 0.85683 0.92723 0.92659 0.92298 0.90966 0.91114 0.88877 0.88703 0.88309 0.86369 0.84951 0.87457 0.90643 0.90865 0.95139 0.90381 0.92640 0.94366 0.90403 0.89794 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.11 -1.07 5.22 -26.74 -0.14 -1.21 16 3 C -0.13 -1.16 4.49 -27.89 -0.13 -1.29 16 4 C 0.53 7.03 6.90 -10.98 -0.08 6.96 16 5 O -0.51 -9.22 15.10 -1.42 -0.02 -9.25 16 6 N -0.60 -7.00 2.68 -169.01 -0.45 -7.45 16 7 C 0.16 1.24 7.23 60.45 0.44 1.67 16 8 S -0.26 -2.27 23.44 -107.50 -2.52 -4.79 16 9 C -0.06 -0.56 6.33 37.98 0.24 -0.32 16 10 C 0.12 1.43 2.08 -68.80 -0.14 1.29 16 11 H 0.11 1.38 6.74 -51.93 -0.35 1.03 16 12 C 0.51 8.40 5.84 -10.98 -0.06 8.34 16 13 O -0.54 -10.55 14.96 -1.43 -0.02 -10.57 16 14 N -0.59 -10.00 2.94 -172.21 -0.51 -10.50 16 15 C 0.08 1.22 6.06 -3.37 -0.02 1.20 16 16 C 0.14 2.52 6.69 -3.37 -0.02 2.50 16 17 N -0.61 -14.12 2.77 -171.76 -0.48 -14.60 16 18 C -0.26 -7.18 10.10 -15.06 -0.15 -7.33 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.02 0.68 5.38 -17.43 -0.09 0.58 16 21 N -0.91 -27.79 13.97 55.49 0.78 -27.01 16 22 Si 0.89 22.73 24.30 -169.99 -4.13 18.60 16 23 H -0.29 -7.17 6.80 56.52 0.38 -6.78 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.26 -6.74 5.71 56.52 0.32 -6.42 16 26 C 0.11 2.53 4.26 -3.60 -0.02 2.52 16 27 C 0.10 1.85 6.60 -3.60 -0.02 1.83 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.09 0.56 7.64 -51.93 -0.40 0.16 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 0.61 7.13 -51.93 -0.37 0.24 16 37 H 0.13 0.95 7.40 -51.93 -0.38 0.56 16 38 H 0.11 1.01 7.85 -51.93 -0.41 0.61 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.81 4.76 -51.93 -0.25 0.56 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.37 7.93 -51.93 -0.41 0.95 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.04 0.91 6.71 -51.93 -0.35 0.57 16 45 H 0.08 1.87 4.03 -51.92 -0.21 1.66 16 46 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -35.88 371.74 -8.95 -44.83 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.37 Total: -0.92 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 0.17 Total: 16.06 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.66 Total: -59.56 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.04 Total: -19.82 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.13 Total: 18.60 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.52 Total: -4.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.88 -8.95 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330922687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.449 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds