Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47308 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99605 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00254 * 179.97438 * 4 3 2 7 7 C 1.47607 * 122.42822 * 359.71037 * 6 4 3 8 8 S 1.84333 * 102.51579 * 155.11395 * 7 6 4 9 9 C 1.84205 * 93.83001 * 33.71108 * 8 7 6 10 10 C 1.45502 * 122.43120 * 179.97438 * 6 4 3 11 11 H 1.08998 * 108.75628 * 301.89107 * 10 6 4 12 12 C 1.50703 * 108.75005 * 60.11079 * 10 6 4 13 13 O 1.21286 * 120.00178 * 15.71905 * 12 10 6 14 14 N 1.34780 * 119.99778 * 195.71817 * 12 10 6 15 15 C 1.46961 * 120.59190 * 3.21641 * 14 12 10 16 16 C 1.53814 * 108.39621 * 124.76078 * 15 14 12 17 17 N 1.46965 * 108.58034 * 49.63739 * 16 15 14 18 18 C 1.36933 * 120.59488 * 124.66884 * 17 16 15 19 19 H 1.07995 * 119.99924 * 331.13268 * 18 17 16 20 20 C 1.38816 * 119.99926 * 151.13490 * 18 17 16 21 21 N 1.31622 * 119.99935 * 167.86428 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 347.86150 * 20 18 17 23 23 H 1.48511 * 109.46655 * 95.24404 * 22 20 18 24 24 H 1.48495 * 109.47169 * 215.24353 * 22 20 18 25 25 H 1.48496 * 109.46977 * 335.24598 * 22 20 18 26 26 C 1.46965 * 118.80920 * 304.64772 * 17 16 15 27 27 C 1.46960 * 120.59245 * 183.50086 * 14 12 10 28 28 H 1.09004 * 109.46995 * 300.00082 * 1 2 3 29 29 H 1.09001 * 109.47144 * 60.00311 * 1 2 3 30 30 H 1.09004 * 109.47742 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47115 * 239.99655 * 2 1 3 32 32 H 1.09003 * 109.46747 * 120.00050 * 2 1 3 33 33 H 1.08996 * 109.47351 * 59.99800 * 3 2 1 34 34 H 1.09003 * 109.47294 * 299.99714 * 3 2 1 35 35 H 1.09000 * 110.77562 * 273.47605 * 7 6 4 36 36 H 1.08996 * 110.77834 * 36.89939 * 7 6 4 37 37 H 1.08999 * 111.05648 * 209.57185 * 9 8 7 38 38 H 1.08998 * 111.08727 * 85.60738 * 9 8 7 39 39 H 1.08998 * 109.60983 * 244.54319 * 15 14 12 40 40 H 1.08996 * 109.61378 * 5.05486 * 15 14 12 41 41 H 1.09005 * 109.74449 * 289.84866 * 16 15 14 42 42 H 1.09002 * 109.67891 * 169.38641 * 16 15 14 43 43 H 0.96993 * 119.99913 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.61452 * 295.47712 * 26 17 16 45 45 H 1.09011 * 109.60970 * 174.97066 * 26 17 16 46 46 H 1.09005 * 109.61190 * 354.94578 * 27 14 12 47 47 H 1.09005 * 109.61088 * 115.45999 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1533 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 3.5378 3.9181 -0.0077 8 16 4.7969 5.0299 0.7514 9 6 6.2218 4.1166 0.0243 10 6 5.6746 2.6713 -0.0013 11 1 6.0479 2.1419 0.8752 12 6 6.1887 1.9807 -1.2382 13 8 5.4354 1.7467 -2.1596 14 7 7.4856 1.6232 -1.3206 15 6 8.3938 1.8366 -0.1851 16 6 9.0469 0.4910 0.1738 17 7 9.5795 -0.1136 -1.0553 18 6 10.8971 -0.4768 -1.1390 19 1 11.6410 0.0535 -0.5631 20 6 11.2766 -1.5266 -1.9641 21 7 12.5497 -1.7254 -2.2328 22 14 9.9805 -2.6572 -2.6931 23 1 9.6247 -2.1880 -4.0565 24 1 10.5164 -4.0400 -2.7696 25 1 8.7702 -2.6422 -1.8328 26 6 8.6724 -0.3219 -2.1927 27 6 8.0181 1.0186 -2.5497 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.3081 4.2293 -1.0267 36 1 2.6340 3.8854 0.6007 37 1 7.1017 4.1906 0.6634 38 1 6.4414 4.4703 -0.9831 39 1 9.1632 2.5572 -0.4625 40 1 7.8298 2.2107 0.6692 41 1 8.3036 -0.1727 0.6157 42 1 9.8587 0.6545 0.8826 43 1 12.8148 -2.4587 -2.8096 44 1 7.9026 -1.0435 -1.9195 45 1 9.2375 -0.6925 -3.0481 46 1 7.2059 0.8523 -3.2573 47 1 8.7614 1.6823 -2.9915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330922687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = -41.256813 kcal Electronic energy + Delta-G solvation = -29225.497107 eV Core-core repulsion = 25342.239684 eV Total energy + Delta-G solvation = -3883.257423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00317 -40.52760 -38.75323 -37.31431 -35.85052 -35.40172 -33.68533 -33.00297 -31.97406 -29.12763 -28.79974 -28.35679 -25.80420 -25.38556 -24.47979 -23.10858 -22.21063 -21.02641 -19.93347 -19.21750 -18.56959 -18.29573 -17.94348 -17.39148 -16.93547 -16.79037 -16.44727 -16.16197 -16.07083 -15.69097 -15.46631 -15.08804 -14.95111 -14.72372 -14.50119 -14.45345 -14.12099 -14.04593 -13.99046 -13.68143 -13.34376 -13.14975 -12.96904 -12.87159 -12.71608 -12.55736 -12.25332 -12.11521 -12.05585 -11.99258 -11.85388 -11.67913 -11.53824 -11.15835 -10.98081 -10.78917 -9.99266 -9.96466 -8.96145 -8.91685 -8.21326 -5.59480 0.50413 0.80325 1.20726 1.25997 1.35298 1.40568 1.48279 1.63210 1.98317 2.32352 3.02370 3.03720 3.17521 3.23993 3.48772 3.72965 3.90791 3.96583 3.98007 4.01479 4.10863 4.16713 4.23397 4.27132 4.30759 4.36551 4.42346 4.46430 4.51559 4.58528 4.66559 4.67489 4.71549 4.83462 4.85284 4.98797 5.09583 5.20121 5.23428 5.37631 5.42940 5.79434 6.00542 6.07074 6.32378 6.79604 6.93781 7.03865 7.51087 7.92957 8.97882 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003616 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.010068 B = 7741.506037 C = 9230.162740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.126 4.126 4 C 0.521 3.479 5 O -0.572 6.572 6 N -0.605 5.605 7 C 0.153 3.847 8 S -0.252 6.252 9 C -0.058 4.058 10 C 0.119 3.881 11 H 0.113 0.887 12 C 0.508 3.492 13 O -0.573 6.573 14 N -0.599 5.599 15 C 0.094 3.906 16 C 0.128 3.872 17 N -0.619 5.619 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.030 4.030 21 N -0.956 5.956 22 Si 0.940 3.060 23 H -0.280 1.280 24 H -0.311 1.311 25 H -0.268 1.268 26 C 0.114 3.886 27 C 0.108 3.892 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.262 0.738 44 H 0.020 0.980 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.181 16.710 8.097 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.311 3.689 5 O -0.450 6.450 6 N -0.340 5.340 7 C -0.080 4.080 8 S -0.026 6.026 9 C -0.207 4.207 10 C 0.009 3.991 11 H 0.130 0.870 12 C 0.294 3.706 13 O -0.452 6.452 14 N -0.331 5.331 15 C -0.029 4.029 16 C 0.002 3.998 17 N -0.344 5.344 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.225 4.225 21 N -0.603 5.603 22 Si 0.772 3.228 23 H -0.207 1.207 24 H -0.240 1.240 25 H -0.193 1.193 26 C -0.012 4.012 27 C -0.016 4.016 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.254 16.936 8.313 30.728 hybrid contribution 0.434 -2.332 -1.608 2.866 sum -23.821 14.604 6.705 28.734 Atomic orbital electron populations 1.21736 0.92910 1.02430 1.03078 1.21268 0.97307 0.94850 1.01567 1.21803 0.87400 1.00413 1.06864 1.21502 0.92121 0.81508 0.73762 1.90752 1.71582 1.32441 1.50208 1.48380 1.03983 1.07068 1.74593 1.24619 0.97713 0.80558 1.05080 1.88448 1.03253 1.42943 1.67920 1.24536 1.00098 0.89435 1.06604 1.21243 0.83004 0.98037 0.96777 0.86962 1.21222 0.81416 0.78685 0.89275 1.90629 1.56246 1.56876 1.41467 1.48024 1.09004 1.60098 1.15981 1.22632 0.93435 0.98446 0.88398 1.21607 0.97444 0.92744 0.87972 1.44393 1.06325 1.73040 1.10593 1.18954 0.82947 1.10445 1.24766 0.91137 1.25827 0.96929 0.98888 1.00833 1.69850 1.16321 1.33336 1.40763 0.86091 0.79952 0.78183 0.78622 1.20698 1.24044 1.19271 1.21707 0.92532 0.95763 0.91208 1.21929 0.97973 0.94844 0.86883 0.90786 0.91663 0.92608 0.94234 0.92750 0.85095 0.86685 0.87388 0.82976 0.82475 0.87546 0.88984 0.86653 0.95858 0.89251 0.92872 0.96208 0.92155 0.90311 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.11 -2.06 5.22 30.59 0.16 -1.90 16 3 C -0.13 -1.86 4.49 29.85 0.13 -1.72 16 4 C 0.52 13.08 6.90 87.66 0.60 13.69 16 5 O -0.57 -20.89 15.10 3.65 0.06 -20.84 16 6 N -0.60 -12.47 2.68 -807.02 -2.16 -14.63 16 7 C 0.15 1.82 7.23 127.56 0.92 2.74 16 8 S -0.25 -3.44 23.44 -56.49 -1.32 -4.76 16 9 C -0.06 -0.86 6.33 72.51 0.46 -0.40 16 10 C 0.12 2.64 2.08 44.96 0.09 2.73 16 11 H 0.11 2.48 6.74 -2.39 -0.02 2.47 16 12 C 0.51 16.02 5.84 87.66 0.51 16.53 16 13 O -0.57 -22.33 14.96 3.63 0.05 -22.27 16 14 N -0.60 -19.31 2.94 -817.15 -2.40 -21.72 16 15 C 0.09 2.49 6.06 86.57 0.52 3.02 16 16 C 0.13 4.58 6.69 86.57 0.58 5.16 16 17 N -0.62 -28.73 2.77 -697.32 -1.93 -30.67 16 18 C -0.24 -13.30 10.10 84.04 0.85 -12.45 16 19 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 20 C -0.03 -1.74 5.38 84.86 0.46 -1.29 16 21 N -0.96 -59.69 13.97 21.65 0.30 -59.39 16 22 Si 0.94 48.43 24.30 68.60 1.67 50.09 16 23 H -0.28 -13.79 6.80 99.48 0.68 -13.12 16 24 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16 25 H -0.27 -13.73 5.71 99.48 0.57 -13.16 16 26 C 0.11 5.14 4.26 86.42 0.37 5.51 16 27 C 0.11 4.07 6.60 86.42 0.57 4.64 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.04 0.96 8.10 -2.39 -0.02 0.95 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.13 0.96 7.64 -2.39 -0.02 0.94 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.15 0.77 7.13 -2.39 -0.02 0.75 16 37 H 0.16 1.51 7.40 -2.39 -0.02 1.49 16 38 H 0.11 1.66 7.85 -2.39 -0.02 1.64 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.12 2.11 4.76 -2.39 -0.01 2.09 16 41 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.09 2.99 7.93 -2.39 -0.02 2.97 16 43 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.02 0.97 6.71 -2.39 -0.02 0.96 16 45 H 0.06 2.93 4.03 -2.38 -0.01 2.92 16 46 H 0.08 3.04 6.99 -2.38 -0.02 3.03 16 47 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -82.25 371.74 2.01 -80.24 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.80 Total: 8.65 kcal Atomic # 6 Polarization: 28.35 SS G_CDS: 6.94 Total: 35.29 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -6.19 Total: -126.41 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: 0.11 Total: -43.11 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.67 Total: 50.09 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.32 Total: -4.76 kcal Total: -82.25 2.01 -80.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330922687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.985 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds