Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.34553 * 2 1 4 4 C 1.53253 * 109.40552 * 240.19831 * 2 1 3 5 5 S 1.81991 * 108.65629 * 177.99413 * 4 2 1 6 6 O 1.42098 * 109.63006 * 166.92598 * 5 4 2 7 7 C 1.81900 * 101.87562 * 51.03986 * 5 4 2 8 8 C 1.53252 * 108.67117 * 308.95349 * 7 5 4 9 9 N 1.46468 * 109.85578 * 61.90786 * 8 7 5 10 10 C 1.46894 * 110.99976 * 162.23525 * 9 8 7 11 11 C 1.50700 * 109.47083 * 287.60548 * 10 9 8 12 12 O 1.21282 * 119.99889 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99849 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47363 * 89.99742 * 14 13 11 16 16 H 1.08001 * 119.99944 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99969 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00117 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46744 * 60.00835 * 19 17 15 21 21 H 1.48500 * 109.47086 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 300.00959 * 19 17 15 23 23 C 1.46501 * 119.99822 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.46749 * 90.00379 * 23 13 11 25 25 C 1.47209 * 109.47005 * 180.02562 * 24 23 13 26 26 N 6.89378 * 48.25374 * 71.15065 * 2 1 3 27 27 H 1.09004 * 109.47160 * 308.56678 * 1 2 3 28 28 H 1.08996 * 109.47314 * 68.56129 * 1 2 3 29 29 H 1.08996 * 109.47369 * 188.56726 * 1 2 3 30 30 H 1.08994 * 109.47596 * 186.74292 * 3 2 1 31 31 H 1.09002 * 109.46864 * 306.74685 * 3 2 1 32 32 H 1.09002 * 109.47127 * 66.74231 * 3 2 1 33 33 H 1.08997 * 109.63318 * 297.58279 * 4 2 1 34 34 H 1.09007 * 109.62843 * 58.17532 * 4 2 1 35 35 H 1.09009 * 109.63259 * 189.14848 * 7 5 4 36 36 H 1.08998 * 109.63492 * 68.76130 * 7 5 4 37 37 H 1.09002 * 109.40188 * 182.02427 * 8 7 5 38 38 H 1.08997 * 109.40375 * 301.78799 * 8 7 5 39 39 H 1.09003 * 109.47320 * 47.60259 * 10 9 8 40 40 H 1.08996 * 109.47489 * 167.60256 * 10 9 8 41 41 H 1.09005 * 109.47072 * 209.99639 * 14 13 11 42 42 H 1.08998 * 109.46996 * 329.99557 * 14 13 11 43 43 H 0.97000 * 119.99767 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.47097 * 210.00308 * 23 13 11 45 45 H 1.08992 * 109.47347 * 330.00339 * 23 13 11 46 46 H 1.08997 * 109.47261 * 299.99281 * 24 23 13 47 47 H 1.08996 * 109.47715 * 59.99963 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0367 1.4436 0.0000 4 6 2.0391 -0.7184 -1.2543 5 16 3.8579 -0.6544 -1.2640 6 8 4.3622 -1.5589 -2.2369 7 6 4.2628 -1.2665 0.4004 8 6 3.4475 -0.4727 1.4269 9 7 2.0166 -0.6867 1.1987 10 6 1.2321 -0.3034 2.3800 11 6 1.4369 -1.3223 3.4713 12 8 2.1644 -2.2743 3.2833 13 7 0.8107 -1.1762 4.6559 14 6 1.0103 -2.1664 5.7169 15 6 2.1822 -1.7577 6.5716 16 1 2.7239 -0.8507 6.3472 17 6 2.5621 -2.5410 7.6408 18 7 1.9021 -3.6452 7.9143 19 14 4.0152 -2.0347 8.6998 20 1 3.7464 -0.7059 9.3063 21 1 4.2173 -3.0384 9.7754 22 1 5.2371 -1.9572 7.8595 23 6 -0.0685 -0.0265 4.8827 24 6 -1.4954 -0.3852 4.4629 25 6 -2.3788 0.7702 4.6903 26 7 -3.0602 1.6618 4.8676 27 1 -0.3634 0.6407 0.8035 28 1 -0.3634 0.3756 -0.9565 29 1 -0.3634 -1.0161 0.1531 30 1 3.1200 1.4485 -0.1207 31 1 1.5770 1.9901 -0.8235 32 1 1.7742 1.9209 0.9442 33 1 1.7124 -1.7582 -1.2389 34 1 1.6501 -0.2224 -2.1437 35 1 5.3270 -1.1288 0.5924 36 1 4.0117 -2.3247 0.4726 37 1 3.7079 -0.8055 2.4317 38 1 3.6754 0.5886 1.3278 39 1 1.5586 0.6755 2.7311 40 1 0.1754 -0.2609 2.1162 41 1 0.1133 -2.2239 6.3336 42 1 1.2080 -3.1414 5.2714 43 1 2.1697 -4.1965 8.6663 44 1 -0.0563 0.2371 5.9403 45 1 0.2816 0.8206 4.2931 46 1 -1.5076 -0.6487 3.4053 47 1 -1.8456 -1.2323 5.0525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330968812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -21.763975 kcal Electronic energy + Delta-G solvation = -28917.816412 eV Core-core repulsion = 25035.404262 eV Total energy + Delta-G solvation = -3882.412150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.20306 -38.54946 -36.87334 -35.70028 -35.25074 -33.33758 -32.93573 -31.29545 -30.86631 -27.89034 -27.72182 -27.63212 -25.63437 -24.03574 -22.96561 -22.52012 -19.25126 -18.47262 -17.71831 -17.55309 -16.82461 -16.50137 -16.13542 -15.80600 -15.45098 -15.29508 -14.96585 -14.76346 -14.56945 -14.41552 -14.02314 -13.78328 -13.73330 -13.24091 -12.98689 -12.90707 -12.49344 -12.47216 -12.43357 -12.27746 -12.25817 -12.05804 -11.92996 -11.80303 -11.50498 -11.40022 -11.33140 -11.27052 -11.03426 -10.87370 -10.82184 -10.62622 -10.21909 -9.88518 -9.74819 -9.06373 -8.49733 -8.32301 -8.24973 -7.85661 -6.11370 -4.16322 1.52204 2.41982 2.68130 2.76120 3.26707 3.28291 3.32555 3.33167 3.37299 3.66323 3.79427 4.21022 4.38862 4.44005 4.63582 4.75640 4.83009 4.90886 5.00834 5.09349 5.10682 5.15479 5.21443 5.24732 5.28380 5.32912 5.36902 5.44074 5.46350 5.54206 5.62490 5.75413 5.78340 5.86213 5.93240 6.00070 6.02298 6.14891 6.74847 6.97642 7.06302 7.34733 7.41263 7.52522 7.84400 8.14596 8.25267 8.82398 8.99542 9.49381 10.96648 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.003890 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.679075 B = 7195.985535 C = 9431.900024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.134 3.866 3 C -0.192 4.192 4 C -0.419 4.419 5 S 1.216 4.784 6 O -0.864 6.864 7 C -0.422 4.422 8 C 0.076 3.924 9 N -0.527 5.527 10 C 0.028 3.972 11 C 0.506 3.494 12 O -0.513 6.513 13 N -0.600 5.600 14 C 0.247 3.753 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.118 3.882 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.445 5.445 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 12.939 -15.336 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 C -0.251 4.251 4 C -0.557 4.557 5 S 1.417 4.583 6 O -0.859 6.859 7 C -0.561 4.561 8 C -0.052 4.052 9 N -0.252 5.252 10 C -0.103 4.103 11 C 0.291 3.709 12 O -0.387 6.387 13 N -0.333 5.333 14 C 0.128 3.872 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.093 4.093 25 C -0.102 4.102 26 N -0.122 5.122 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.469 13.328 -15.876 20.875 hybrid contribution 0.312 -1.507 1.197 1.950 sum -2.157 11.821 -14.679 18.970 Atomic orbital electron populations 1.22077 0.93308 1.02965 1.02157 1.20541 0.95773 0.90903 0.88461 1.22669 1.02171 0.96808 1.03500 1.27591 1.19806 1.06497 1.01774 1.70286 0.87122 1.16721 0.84206 1.93102 1.72396 1.69160 1.51254 1.27489 1.05646 1.08862 1.14099 1.21758 0.85640 0.97324 1.00477 1.60901 1.03383 1.58999 1.01902 1.22262 1.00306 0.97167 0.90538 1.20235 0.81036 0.87004 0.82618 1.90701 1.36298 1.31711 1.80018 1.48230 1.44704 1.25688 1.14660 1.19312 0.96738 0.87502 0.83662 1.21359 1.14681 1.08756 1.11976 0.92496 1.24911 0.96790 0.94775 0.97440 1.69907 1.40388 1.13631 1.29258 0.86596 0.82994 0.78180 0.79866 1.20246 1.21216 1.20219 1.21289 0.86589 0.89372 1.03612 1.19923 0.93091 0.91504 1.04777 1.29122 0.93751 0.94345 0.92947 1.81217 1.10347 1.11460 1.09200 0.91816 0.91677 0.91312 0.91293 0.90904 0.91424 0.88406 0.86695 0.86682 0.88083 0.88387 0.92934 0.91759 0.87465 0.94849 0.93630 0.92607 0.88769 0.90824 0.87686 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 7.27 37.15 0.27 -0.78 16 2 C 0.13 1.09 0.70 -131.71 -0.09 1.00 16 3 C -0.19 -1.03 7.31 37.16 0.27 -0.76 16 4 C -0.42 -3.74 5.46 37.29 0.20 -3.53 16 5 S 1.22 11.76 12.21 -107.50 -1.31 10.45 16 6 O -0.86 -14.22 18.15 -35.23 -0.64 -14.86 16 7 C -0.42 -4.87 6.66 37.29 0.25 -4.62 16 8 C 0.08 0.87 4.71 -3.93 -0.02 0.85 16 9 N -0.53 -6.02 3.87 -220.78 -0.85 -6.88 16 10 C 0.03 0.31 3.23 -4.98 -0.02 0.30 16 11 C 0.51 8.59 7.23 -10.98 -0.08 8.51 16 12 O -0.51 -11.33 14.63 5.56 0.08 -11.24 16 13 N -0.60 -10.20 2.46 -175.07 -0.43 -10.63 16 14 C 0.25 5.64 5.16 -5.20 -0.03 5.61 16 15 C -0.53 -13.65 9.39 -34.44 -0.32 -13.97 16 16 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.12 1.41 5.17 -4.04 -0.02 1.39 16 24 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 25 C 0.22 2.37 15.43 -20.75 -0.32 2.05 16 26 N -0.44 -6.07 18.54 42.16 0.78 -5.29 16 27 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 28 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.07 0.28 5.14 -51.93 -0.27 0.01 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.36 7.22 -51.93 -0.37 -0.02 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.11 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.10 1.46 6.42 -51.93 -0.33 1.13 16 38 H 0.05 0.41 5.73 -51.93 -0.30 0.11 16 39 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 40 H 0.11 0.95 4.26 -51.93 -0.22 0.73 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 45 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 46 H 0.11 0.77 7.22 -51.93 -0.37 0.39 16 47 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -38.02 383.64 -8.09 -46.12 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.04 Total: -1.77 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.18 Total: -3.02 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.23 Total: -47.21 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.56 Total: -26.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 11.76 SS G_CDS: -1.31 Total: 10.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.02 -8.09 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330968812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.355 kcal (2) G-P(sol) polarization free energy of solvation -38.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds