Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.34553 * 2 1 4 4 C 1.53253 * 109.40552 * 240.19831 * 2 1 3 5 5 S 1.81991 * 108.65629 * 177.99413 * 4 2 1 6 6 O 1.42098 * 109.63006 * 166.92598 * 5 4 2 7 7 C 1.81900 * 101.87562 * 51.03986 * 5 4 2 8 8 C 1.53252 * 108.67117 * 308.95349 * 7 5 4 9 9 N 1.46468 * 109.85578 * 61.90786 * 8 7 5 10 10 C 1.46894 * 110.99976 * 162.23525 * 9 8 7 11 11 C 1.50700 * 109.47083 * 287.60548 * 10 9 8 12 12 O 1.21282 * 119.99889 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99849 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47363 * 89.99742 * 14 13 11 16 16 H 1.08001 * 119.99944 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99969 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00117 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46744 * 60.00835 * 19 17 15 21 21 H 1.48500 * 109.47086 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 300.00959 * 19 17 15 23 23 C 1.46501 * 119.99822 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.46749 * 90.00379 * 23 13 11 25 25 C 1.47209 * 109.47005 * 180.02562 * 24 23 13 26 26 N 6.89378 * 48.25374 * 71.15065 * 2 1 3 27 27 H 1.09004 * 109.47160 * 308.56678 * 1 2 3 28 28 H 1.08996 * 109.47314 * 68.56129 * 1 2 3 29 29 H 1.08996 * 109.47369 * 188.56726 * 1 2 3 30 30 H 1.08994 * 109.47596 * 186.74292 * 3 2 1 31 31 H 1.09002 * 109.46864 * 306.74685 * 3 2 1 32 32 H 1.09002 * 109.47127 * 66.74231 * 3 2 1 33 33 H 1.08997 * 109.63318 * 297.58279 * 4 2 1 34 34 H 1.09007 * 109.62843 * 58.17532 * 4 2 1 35 35 H 1.09009 * 109.63259 * 189.14848 * 7 5 4 36 36 H 1.08998 * 109.63492 * 68.76130 * 7 5 4 37 37 H 1.09002 * 109.40188 * 182.02427 * 8 7 5 38 38 H 1.08997 * 109.40375 * 301.78799 * 8 7 5 39 39 H 1.09003 * 109.47320 * 47.60259 * 10 9 8 40 40 H 1.08996 * 109.47489 * 167.60256 * 10 9 8 41 41 H 1.09005 * 109.47072 * 209.99639 * 14 13 11 42 42 H 1.08998 * 109.46996 * 329.99557 * 14 13 11 43 43 H 0.97000 * 119.99767 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.47097 * 210.00308 * 23 13 11 45 45 H 1.08992 * 109.47347 * 330.00339 * 23 13 11 46 46 H 1.08997 * 109.47261 * 299.99281 * 24 23 13 47 47 H 1.08996 * 109.47715 * 59.99963 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0367 1.4436 0.0000 4 6 2.0391 -0.7184 -1.2543 5 16 3.8579 -0.6544 -1.2640 6 8 4.3622 -1.5589 -2.2369 7 6 4.2628 -1.2665 0.4004 8 6 3.4475 -0.4727 1.4269 9 7 2.0166 -0.6867 1.1987 10 6 1.2321 -0.3034 2.3800 11 6 1.4369 -1.3223 3.4713 12 8 2.1644 -2.2743 3.2833 13 7 0.8107 -1.1762 4.6559 14 6 1.0103 -2.1664 5.7169 15 6 2.1822 -1.7577 6.5716 16 1 2.7239 -0.8507 6.3472 17 6 2.5621 -2.5410 7.6408 18 7 1.9021 -3.6452 7.9143 19 14 4.0152 -2.0347 8.6998 20 1 3.7464 -0.7059 9.3063 21 1 4.2173 -3.0384 9.7754 22 1 5.2371 -1.9572 7.8595 23 6 -0.0685 -0.0265 4.8827 24 6 -1.4954 -0.3852 4.4629 25 6 -2.3788 0.7702 4.6903 26 7 -3.0602 1.6618 4.8676 27 1 -0.3634 0.6407 0.8035 28 1 -0.3634 0.3756 -0.9565 29 1 -0.3634 -1.0161 0.1531 30 1 3.1200 1.4485 -0.1207 31 1 1.5770 1.9901 -0.8235 32 1 1.7742 1.9209 0.9442 33 1 1.7124 -1.7582 -1.2389 34 1 1.6501 -0.2224 -2.1437 35 1 5.3270 -1.1288 0.5924 36 1 4.0117 -2.3247 0.4726 37 1 3.7079 -0.8055 2.4317 38 1 3.6754 0.5886 1.3278 39 1 1.5586 0.6755 2.7311 40 1 0.1754 -0.2609 2.1162 41 1 0.1133 -2.2239 6.3336 42 1 1.2080 -3.1414 5.2714 43 1 2.1697 -4.1965 8.6663 44 1 -0.0563 0.2371 5.9403 45 1 0.2816 0.8206 4.2931 46 1 -1.5076 -0.6487 3.4053 47 1 -1.8456 -1.2323 5.0525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330968812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -51.113831 kcal Electronic energy + Delta-G solvation = -28919.089117 eV Core-core repulsion = 25035.404262 eV Total energy + Delta-G solvation = -3883.684855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.20835 -39.62827 -37.90048 -36.83020 -36.57776 -34.85150 -34.08844 -32.34609 -32.02032 -29.41277 -28.32794 -28.24405 -26.87034 -25.24775 -24.17719 -23.73259 -20.19509 -19.53284 -18.78984 -18.48559 -18.28888 -17.80483 -17.20951 -16.90851 -16.55091 -16.27927 -16.13032 -15.78388 -15.62019 -15.52225 -15.13645 -14.79354 -14.65389 -14.34105 -14.06342 -13.96642 -13.69312 -13.54859 -13.46348 -13.30235 -13.14848 -13.07582 -12.90147 -12.75594 -12.68319 -12.58372 -12.49764 -12.25673 -12.17828 -12.11921 -11.95882 -11.74824 -11.65447 -11.55617 -10.84982 -10.56634 -10.41550 -9.38694 -9.25596 -9.06036 -8.15683 -6.28027 0.70061 1.40691 1.43746 1.50113 1.58893 1.75134 1.89210 2.02416 2.26207 2.45062 2.77013 2.90577 3.15344 3.23346 3.77972 3.81706 3.95938 4.09529 4.15648 4.17758 4.21031 4.24843 4.36060 4.47517 4.49981 4.54848 4.67886 4.84061 4.89427 4.92302 4.96953 5.02955 5.10433 5.12153 5.15038 5.15812 5.27911 5.37649 5.42013 5.59148 5.65307 5.91604 6.04636 6.16287 6.32697 6.65910 6.81248 6.91156 7.38628 7.66909 8.90581 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.003890 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.679075 B = 7195.985535 C = 9431.900024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 C -0.197 4.197 4 C -0.417 4.417 5 S 1.288 4.712 6 O -0.933 6.933 7 C -0.429 4.429 8 C 0.079 3.921 9 N -0.558 5.558 10 C 0.042 3.958 11 C 0.498 3.502 12 O -0.577 6.577 13 N -0.601 5.601 14 C 0.262 3.738 15 C -0.535 4.535 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.956 3.044 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.280 1.280 23 C 0.114 3.886 24 C -0.040 4.040 25 C 0.246 3.754 26 N -0.487 5.487 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.139 0.861 41 H 0.030 0.970 42 H -0.003 1.003 43 H 0.264 0.736 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.136 0.864 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 16.888 -16.534 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 C -0.256 4.256 4 C -0.557 4.557 5 S 1.490 4.510 6 O -0.929 6.929 7 C -0.567 4.567 8 C -0.050 4.050 9 N -0.283 5.283 10 C -0.088 4.088 11 C 0.286 3.714 12 O -0.455 6.455 13 N -0.333 5.333 14 C 0.141 3.859 15 C -0.574 4.574 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.782 3.218 20 H -0.184 1.184 21 H -0.212 1.212 22 H -0.205 1.205 23 C -0.011 4.011 24 C -0.081 4.081 25 C -0.071 4.071 26 N -0.165 5.165 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.157 0.843 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.154 0.846 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.324 17.330 -17.082 24.560 hybrid contribution 0.505 -2.785 1.546 3.225 sum -2.819 14.545 -15.536 21.468 Atomic orbital electron populations 1.22135 0.92135 1.02365 1.04184 1.20698 0.96692 0.92303 0.85972 1.22741 1.03107 0.94323 1.05388 1.27637 1.18301 1.05506 1.04224 1.69376 0.86938 1.13810 0.80926 1.92969 1.75119 1.70805 1.54028 1.27587 1.06859 1.06186 1.16079 1.21706 0.85970 0.99445 0.97854 1.60727 1.03316 1.61178 1.03099 1.22243 1.02225 0.95888 0.88473 1.21382 0.79392 0.87269 0.83342 1.90681 1.38973 1.34654 1.81196 1.48101 1.45667 1.25947 1.13568 1.18712 0.95634 0.87122 0.84478 1.21736 1.15242 1.08426 1.11985 0.92506 1.25742 0.99359 0.94856 0.99014 1.70031 1.42106 1.14813 1.29953 0.85634 0.79557 0.78492 0.78124 1.18444 1.21164 1.20543 1.21533 0.87170 0.88444 1.03945 1.19843 0.90974 0.90658 1.06602 1.29093 0.92880 0.93597 0.91512 1.81266 1.11673 1.12812 1.10776 0.89766 0.89654 0.93324 0.90192 0.88215 0.90260 0.91355 0.83436 0.85550 0.92671 0.92552 0.88392 0.88462 0.84316 0.95155 0.98521 0.92753 0.90013 0.86944 0.84607 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.27 71.98 0.52 -0.95 16 2 C 0.13 1.67 0.70 3.69 0.00 1.68 16 3 C -0.20 -0.98 7.31 71.98 0.53 -0.46 16 4 C -0.42 -6.50 5.46 72.07 0.39 -6.11 16 5 S 1.29 23.50 12.21 -56.49 -0.69 22.81 16 6 O -0.93 -31.13 18.15 -148.98 -2.70 -33.84 16 7 C -0.43 -10.17 6.66 72.07 0.48 -9.69 16 8 C 0.08 1.71 4.71 86.47 0.41 2.12 16 9 N -0.56 -11.70 3.87 -852.40 -3.30 -15.00 16 10 C 0.04 0.81 3.23 85.56 0.28 1.09 16 11 C 0.50 16.79 7.23 87.66 0.63 17.42 16 12 O -0.58 -26.84 14.63 -3.04 -0.04 -26.89 16 13 N -0.60 -20.18 2.46 -826.17 -2.03 -22.21 16 14 C 0.26 12.43 5.16 85.63 0.44 12.87 16 15 C -0.54 -28.23 9.39 25.60 0.24 -27.99 16 16 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.01 0.50 5.46 84.65 0.46 0.96 16 18 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C 0.11 2.43 5.17 86.38 0.45 2.87 16 24 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 25 C 0.25 4.66 15.43 89.44 1.38 6.04 16 26 N -0.49 -12.13 18.54 20.01 0.37 -11.76 16 27 H 0.08 0.49 6.54 -2.39 -0.02 0.48 16 28 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 29 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.08 0.22 5.14 -2.39 -0.01 0.20 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.08 0.30 7.22 -2.39 -0.02 0.28 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.15 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.72 6.42 -2.39 -0.02 1.71 16 38 H 0.10 1.19 5.73 -2.39 -0.01 1.17 16 39 H 0.10 1.31 6.70 -2.39 -0.02 1.30 16 40 H 0.14 1.80 4.26 -2.39 -0.01 1.79 16 41 H 0.03 1.44 8.07 -2.38 -0.02 1.42 16 42 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 43 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 45 H 0.11 1.56 6.44 -2.39 -0.02 1.55 16 46 H 0.14 1.39 7.22 -2.39 -0.02 1.37 16 47 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -91.40 383.64 1.29 -90.11 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.98 Total: 6.00 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.39 Total: -0.60 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.67 Total: -102.72 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -2.75 Total: -60.72 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.69 Total: 22.81 kcal Total: -91.40 1.29 -90.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330968812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.001 kcal (2) G-P(sol) polarization free energy of solvation -91.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds