Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 H 1.09005 * 109.47119 * 180.73772 * 3 2 1 5 5 C 1.50702 * 109.46874 * 300.73329 * 3 2 1 6 6 H 1.07998 * 120.00410 * 120.00165 * 5 3 2 7 7 C 1.37879 * 119.99840 * 299.72582 * 5 3 2 8 8 N 1.31517 * 120.00417 * 0.27119 * 7 5 3 9 9 Si 1.86808 * 120.00002 * 180.27524 * 7 5 3 10 10 H 1.48505 * 109.46909 * 90.00057 * 9 7 5 11 11 H 1.48500 * 109.47006 * 209.99647 * 9 7 5 12 12 H 1.48496 * 109.46987 * 329.99935 * 9 7 5 13 13 N 1.46890 * 109.47223 * 60.73137 * 3 2 1 14 14 C 1.46899 * 111.00126 * 85.91322 * 13 3 2 15 15 C 1.50700 * 109.47235 * 175.54248 * 14 13 3 16 16 C 1.39868 * 126.03997 * 90.02950 * 15 14 13 17 17 N 1.30840 * 108.20470 * 179.97438 * 16 15 14 18 18 N 1.40089 * 108.20018 * 359.97438 * 17 16 15 19 19 C 1.46503 * 126.03548 * 180.02562 * 18 17 16 20 20 C 1.52999 * 108.89958 * 103.70395 * 19 18 17 21 21 C 1.52971 * 108.93315 * 222.26424 * 19 18 17 22 22 C 1.55097 * 108.66968 * 90.80398 * 21 19 18 23 23 S 1.83844 * 101.18748 * 41.87276 * 22 21 19 24 24 O 1.42096 * 109.61427 * 211.04869 * 23 22 21 25 25 O 1.42101 * 109.61415 * 77.09490 * 23 22 21 26 26 C 1.53629 * 108.93115 * 345.02430 * 19 18 17 27 27 C 1.34945 * 107.92775 * 359.75836 * 18 17 16 28 28 H 1.09006 * 109.46943 * 305.17050 * 1 2 3 29 29 H 1.09001 * 109.47566 * 65.17183 * 1 2 3 30 30 H 1.09001 * 109.46973 * 185.17628 * 1 2 3 31 31 H 1.09004 * 109.47364 * 239.99800 * 2 1 3 32 32 H 1.08997 * 109.47188 * 119.99892 * 2 1 3 33 33 H 0.96996 * 120.00629 * 180.02562 * 8 7 5 34 34 H 1.00902 * 110.99956 * 209.86347 * 13 3 2 35 35 H 1.09005 * 109.47252 * 295.54347 * 14 13 3 36 36 H 1.09006 * 109.47099 * 55.54447 * 14 13 3 37 37 H 1.08001 * 125.89810 * 359.94775 * 16 15 14 38 38 H 1.08999 * 109.46991 * 59.30418 * 20 19 18 39 39 H 1.09002 * 109.47175 * 179.30220 * 20 19 18 40 40 H 1.09003 * 109.47083 * 299.29938 * 20 19 18 41 41 H 1.09002 * 109.64880 * 210.64638 * 21 19 18 42 42 H 1.09004 * 109.65086 * 330.96031 * 21 19 18 43 43 H 1.08998 * 111.07659 * 283.89446 * 22 21 19 44 44 H 1.09000 * 111.07601 * 159.85193 * 22 21 19 45 45 H 1.09004 * 110.26524 * 0.59556 * 26 19 18 46 46 H 1.08998 * 110.27146 * 122.65918 * 26 19 18 47 47 H 1.08002 * 126.12575 * 180.24261 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0132 5 6 1.5228 2.1581 -1.2213 6 1 0.9032 3.0358 -1.1111 7 6 1.8454 1.6956 -2.4795 8 7 2.6000 0.6269 -2.6139 9 14 1.2108 2.5872 -3.9935 10 1 2.1862 3.6312 -4.3983 11 1 1.0363 1.6158 -5.1031 12 1 -0.0946 3.2232 -3.6825 13 7 1.5649 2.1299 1.2081 14 6 2.4739 1.8969 2.3383 15 6 2.0155 2.7031 3.5261 16 6 1.1219 2.2773 4.5143 17 7 0.9714 3.2502 5.3760 18 7 1.7662 4.3274 4.9630 19 6 1.8912 5.6177 5.6454 20 6 3.2272 5.6573 6.3900 21 6 1.8749 6.7352 4.6008 22 6 0.4089 7.1947 4.3881 23 16 -0.2123 7.2175 6.1183 24 8 -1.5992 6.9083 6.1313 25 8 0.2676 8.3786 6.7822 26 6 0.7490 5.7559 6.6634 27 6 2.4010 3.9643 3.8288 28 1 -0.3633 0.5920 0.8401 29 1 -0.3634 0.4315 -0.9327 30 1 -0.3633 -1.0235 0.0927 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8273 0.3017 -3.4990 34 1 1.4444 3.1172 1.0386 35 1 2.4704 0.8375 2.5950 36 1 3.4835 2.2002 2.0611 37 1 0.6391 1.3122 4.5582 38 1 4.0431 5.5240 5.6796 39 1 3.3354 6.6191 6.8913 40 1 3.2548 4.8569 7.1295 41 1 2.4748 7.5745 4.9526 42 1 2.2829 6.3641 3.6606 43 1 -0.1433 6.4758 3.7828 44 1 0.3704 8.1896 3.9446 45 1 0.1214 4.8647 6.6500 46 1 1.1517 5.9200 7.6629 47 1 3.0908 4.5726 3.2626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332406007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 18.123027 kcal Electronic energy + Delta-G solvation = -28207.486733 eV Core-core repulsion = 24326.804213 eV Total energy + Delta-G solvation = -3880.682520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48018 -38.10591 -37.36577 -36.39198 -36.20188 -33.03306 -31.84668 -31.03742 -30.73418 -29.30620 -28.33585 -26.37423 -24.79713 -24.09105 -23.06868 -22.30847 -20.08389 -19.79548 -19.24301 -18.97352 -17.78387 -17.01743 -16.42190 -16.15062 -16.00710 -15.37065 -14.92507 -14.64021 -14.35064 -14.28829 -14.12271 -13.84502 -13.62613 -13.32437 -13.10777 -12.86690 -12.74727 -12.62686 -12.53395 -12.41935 -12.29623 -12.07797 -12.00073 -11.96579 -11.73444 -11.28075 -11.09661 -10.94385 -10.79353 -10.72137 -10.48528 -10.37349 -10.07407 -9.70753 -9.37780 -9.34534 -8.79661 -8.48846 -8.29573 -7.18698 -6.02845 -4.08214 -0.40200 1.86633 1.99194 2.25778 2.94799 3.06363 3.26938 3.34856 3.38174 3.45459 3.75069 3.80636 3.97098 4.26533 4.38160 4.39367 4.72326 4.81597 4.92440 4.93506 5.04723 5.08162 5.16604 5.25200 5.28352 5.44784 5.55868 5.58092 5.59501 5.74737 6.03891 6.29235 6.46170 6.55994 6.73143 6.75762 6.87880 6.99301 7.25952 7.32719 7.51749 7.74143 7.75131 7.79555 7.85936 8.28065 8.41342 8.68502 9.01896 9.56729 11.02957 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.002669 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.954495 B =10486.666338 C =11195.772015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.133 3.867 15 C -0.207 4.207 16 C 0.072 3.928 17 N -0.306 5.306 18 N -0.376 5.376 19 C 0.208 3.792 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.577 4.577 23 S 2.383 3.617 24 O -0.929 6.929 25 O -0.931 6.931 26 C -0.594 4.594 27 C 0.049 3.951 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.012 0.988 31 H 0.084 0.916 32 H 0.010 0.990 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.183 0.817 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.168 0.832 46 H 0.147 0.853 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 11.382 17.869 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.003 3.997 15 C -0.218 4.218 16 C -0.114 4.114 17 N -0.127 5.127 18 N -0.160 5.160 19 C 0.123 3.877 20 C -0.222 4.222 21 C -0.179 4.179 22 C -0.706 4.706 23 S 2.566 3.434 24 O -0.926 6.926 25 O -0.928 6.928 26 C -0.723 4.723 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.200 0.800 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.186 0.814 46 H 0.165 0.835 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.062 11.860 19.532 22.851 hybrid contribution 1.474 0.060 -2.410 2.825 sum 1.536 11.920 17.122 20.919 Atomic orbital electron populations 1.21436 0.97532 0.97106 1.01576 1.21417 0.95035 0.98249 0.99318 1.19135 0.92974 0.91587 0.85486 0.98291 1.21184 1.31491 1.11971 0.90370 0.92426 1.24880 0.95098 0.95005 0.98854 1.69882 1.36976 1.22889 1.23006 0.86609 0.79272 0.79415 0.82768 1.20888 1.21250 1.19883 1.60743 1.48358 1.15736 1.06243 1.20215 0.93432 0.97881 0.88215 1.20299 1.04860 0.95473 1.01161 1.23814 0.97185 0.98402 0.92018 1.77108 1.16301 0.95133 1.24125 1.48600 1.35891 1.11615 1.19913 1.20487 0.96216 0.80739 0.90242 1.22437 0.94480 1.04050 1.01197 1.22657 0.95510 0.98271 1.01449 1.30578 1.05771 1.11312 1.22970 1.09356 0.76553 0.77571 0.79948 1.93644 1.28473 1.84741 1.85761 1.93638 1.82450 1.44725 1.71967 1.30813 1.11051 1.22718 1.07720 1.22169 1.00125 0.97082 0.90165 0.93324 0.93098 0.96921 0.89745 0.97140 0.92984 0.85468 0.91154 0.95899 0.79982 0.90785 0.89769 0.90709 0.87083 0.86893 0.83960 0.83782 0.81439 0.83471 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.47 37.15 0.35 -2.28 16 2 C -0.10 -2.39 5.59 -26.73 -0.15 -2.54 16 3 C 0.22 5.11 2.30 -68.87 -0.16 4.95 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -13.26 7.39 -34.44 -0.25 -13.51 16 6 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 7 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 8 N -0.89 -24.58 11.34 55.43 0.63 -23.95 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.68 -13.36 5.50 -109.22 -0.60 -13.96 16 14 C 0.13 2.19 6.02 -4.98 -0.03 2.16 16 15 C -0.21 -2.88 5.57 -105.05 -0.58 -3.46 16 16 C 0.07 0.98 11.96 -17.36 -0.21 0.77 16 17 N -0.31 -4.01 10.81 30.62 0.33 -3.67 16 18 N -0.38 -4.04 3.41 -48.36 -0.16 -4.21 16 19 C 0.21 1.58 1.10 -131.51 -0.14 1.43 16 20 C -0.16 -0.97 8.17 37.16 0.30 -0.67 16 21 C -0.14 -0.82 5.38 -25.64 -0.14 -0.96 16 22 C -0.58 -3.70 7.46 38.27 0.29 -3.41 16 23 S 2.38 19.64 6.05 -107.50 -0.65 18.99 16 24 O -0.93 -11.63 18.16 -57.67 -1.05 -12.68 16 25 O -0.93 -9.67 18.16 -57.67 -1.05 -10.72 16 26 C -0.59 -4.39 6.60 37.48 0.25 -4.14 16 27 C 0.05 0.57 10.18 -17.22 -0.18 0.40 16 28 H 0.05 1.04 7.47 -51.93 -0.39 0.65 16 29 H 0.05 1.21 7.39 -51.93 -0.38 0.83 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 2.22 6.10 -51.93 -0.32 1.91 16 32 H 0.01 0.22 7.58 -51.93 -0.39 -0.17 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.33 6.39 8.13 -39.29 -0.32 6.07 16 35 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 36 H 0.02 0.38 7.94 -51.93 -0.41 -0.03 16 37 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.38 7.81 -51.93 -0.41 -0.02 16 42 H 0.11 0.66 6.21 -51.93 -0.32 0.34 16 43 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.17 1.52 6.47 -51.93 -0.34 1.19 16 46 H 0.15 0.73 7.63 -51.93 -0.40 0.33 16 47 H 0.17 1.53 7.27 -52.49 -0.38 1.15 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -34.13 384.86 -9.86 -44.00 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.34 Total: 4.38 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.75 Total: -19.65 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.19 Total: -45.79 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -2.09 Total: -23.39 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 19.64 SS G_CDS: -0.65 Total: 18.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.13 -9.86 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.120 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds